Array 1 90248-88691 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPVQ01000002.1 Streptococcus gallolyticus strain ICDDRB-NRC-S3 SgS3_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 90247 36 100.0 30 .................................... TGATTTAGTATTTGCACGTAGTTTTAATCT 90181 36 100.0 30 .................................... GTAGAGACTGCGACAATGTTAAGAGAACGT 90115 36 100.0 30 .................................... CTTCTTCGGTGTTAGCATTGCTCATCTGCT 90049 36 100.0 30 .................................... TCGGCAATATTTACGAAAATCCAGAGCTTT 89983 36 100.0 31 .................................... CCAGAAGAATTTAGTGCATAAAAAATAGAAA 89916 36 100.0 30 .................................... ACGATTCAAGGTATAGTTGTGAGATAACAC 89850 36 100.0 30 .................................... AGCAGTTTATCAGTTGGCTGTGATTATGCA 89784 36 100.0 31 .................................... ACATGACACAAGAAGAACTTGCTTTTAAAGC 89717 36 100.0 30 .................................... TATCAAGGAATGTCCAAGATACCCTCTATT 89651 36 100.0 30 .................................... AGCTGCGTATGCATCTAACAAAGCATCTAG 89585 36 100.0 30 .................................... CTACGTATACGCTTAAAATACGAGGAAATA 89519 36 100.0 30 .................................... CTAAGAAAGACGTGAACGAATTAGAATCGT 89453 36 100.0 30 .................................... AAGGATTCGAACCTTGCTAGATACCGTTGT 89387 36 100.0 31 .................................... TCCATCATAGCTGTACGAGCGCCAAGCAGTG 89320 36 100.0 30 .................................... AAGCAGATACTTACGAACGTCAAAACGGTT 89254 36 100.0 30 .................................... AGATAAGGCAGAAAAGCTTGCTGACTTTTT 89188 36 100.0 30 .................................... TTTACTTTTCAAGAATTGCATGTTGATTAC 89122 36 100.0 30 .................................... ATCCTGAAGGGAGGGTGGATACCACTAACC 89056 36 100.0 30 .................................... ATATTATTCGGTGTTTGATGCGAAAGCTCT 88990 36 100.0 30 .................................... AAGCAGATACTTACGAACGTCAAAACGGTT 88924 36 100.0 30 .................................... AGATAAGGCAGAAAAGCTTGCTGACTTTTT 88858 36 100.0 30 .................................... TTTACTTTTCAAGAATTGCATGTTGATTAC 88792 36 100.0 30 .................................... GACATAGTAACCGCTCTTGATACTGCTCCT 88726 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAAACGCGGGCTTGTTGGTGAAGTACTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTACGCTCAAGCCCCAGATGAGGATGGCGCAACATTTAACATCGTTCACGGTTCCGACTCACCAGAATCAGTTGAACGCGAAATCGCCCTCTGGTTTGGAGAATAAATAAAAGGAATTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : TCATTCCTCCTAATTAGAGGTAGACCGTGTAGTTTTATAGCTGTGCTGTTTATTTTACCATCTTATGATGCTTTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACACATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 91321-90889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPVQ01000002.1 Streptococcus gallolyticus strain ICDDRB-NRC-S3 SgS3_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 91320 36 100.0 30 .................................... AAGAGATCAAAAAAGACTGGGATAAACATT 91254 36 100.0 30 .................................... GCTTGTCAATGCTGTTTACATTGCAGTTAC 91188 36 100.0 30 .................................... TGGGCTGATTTAGAAACTGCTATCAATGCA 91122 36 100.0 30 .................................... AGCCCTTGCCCAGATGTACCATTGCTCGAC 91056 36 100.0 30 .................................... TGCTACTTTTGAAGAGAAGTGCGAGCTAGC 90990 36 100.0 30 .................................... TAAGAATTGTTCGAAGTCTACCTCATGGGT 90924 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATTCAGCAATTTTTCACAAAGAAGACGATGGAAGTTTTTGGGTAGAAATTCCAGGATTTGGTGGTGGTACCGAAGGTGATGACGTCGAAGAAGCGATGAAAAATGCTTGAGAAATGTTAAAAAGCTTATTTGCTGCTTATCTAGATGAAGGGTTAGAGCTTCTAAAAGTTGTTGATATGAGTGAATTATCAGTTGAAGTTGGTTTTATTACTTTAATTCAAGCAGCCTCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACGGTTCCAGAATGGTTAGTCAGATTCGCTGATCGAGAATATGTTAATTATTCAGAAGGTTTGGCACAAGTTTTAGAGAAAAAATTAAAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGTTTTTTAGGTATAATATAGTTAAAAATAATGAACTATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTTGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTGAGCAGAAATAGTATTCTCAGAAACGTACTAAATTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAAACGCGGGCTTGTTGGTGAAGTACTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTACGCTCAAGCCCCAGATGAGGATGGCGCAACATTTAACATCGTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //