Array 1 4476313-4475491 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023396.1 Nocardia wallacei strain FMUON74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 4476312 29 100.0 32 ............................. CCATCGCCCCGCAAGAGGTCCGCGCCATGAAC 4476251 29 100.0 32 ............................. GATGGCCAGCCTGCCCAAGCGGGGATGACTGG 4476190 29 96.6 32 ............................T TCCTGTCGCTGATTTCGTCATGAGGTCGATTG 4476129 29 100.0 32 ............................. TCGACGACGAGGTCACCGACCAGCGGGATCGG 4476068 29 93.1 32 ..............C.......C...... ACCACCCCGACCTCTACGCCCGCTACCAATCC 4476007 29 86.2 32 .....T..A.....C.............T CGAAGAGGAAACCGGCCGCCGGTACACCCGTG 4475946 29 96.6 32 ..............C.............. GTGCTTTCCGAGTGGGTGAAGACCGAGGATGC 4475885 29 93.1 32 ..............C.............C ACCAGGTCCGCCACGGCCCGCTGGTAGATGGG 4475824 29 93.1 32 ..............C.............T GATGATTTTCCAGCGTGTGTAGCTGGTCCGGG A [4475798] 4475762 29 93.1 32 ..............C..A........... CGAGTGACCGCGATGGCGCGAGAGGTTGCCGC 4475701 29 93.1 32 ..............C.............T CCGCCGATGACCGCACGGTTCGGCGTCTCGCG 4475640 29 86.2 91 .CA...........C........A..... CGCCGACGGGAGAAACCCGAGGGCGATTGGGATCATCCCCCCGAGCGCGGGGAGCACGGCGCCGAGGGATCGACGTTGGAGAACCATGCAG A [4475632] 4475519 28 69.0 0 .GA.A.......TGC.......GC.-... | T [4475517] ========== ====== ====== ====== ============================= =========================================================================================== ================== 13 29 92.3 37 GTGCTCCCCGCGCATGCGGGGATGATCCG # Left flank : GTCCAAGCGAATCTGAAGAAGATCCGCGGCACCGGTACCGCCGCCAACGGCACGATCGTCGCCACCGTCGACTCCGCCGGACACCTCCGCGGCCTTACACTCCCGCCGAACACTACAAGGTTCGGTAGCCAGCTCAGCCTACTCATCCTCGAGGCCACGGCTGCCGCAGAGAAGGATGCTGCCAGAAAATCCGCCCACGCCGTGCGTCCCCTCACCGCAGACGACCGTGTCCAGGCCGGCCTCACTGCTATCCGAGCAACGCTCAACCAGCACGACCGGGTAACGCAGCAACCCCGCGCTTTGACCGAGGACGAGATCCAGGCTGCCGACGACGCCTACTTCGAGAAGATGAACGGGAACGGATGGCTGCAACGGTAGACAAACCCTTCGCTACAGTACGACAACGAGAGCACGCGGCATGCAGCCGGGACACGATTCAACGCGTGAGCAAACTGAATCGATTCCCGGGTGTGTCGCGGTAACGCGCCAGGTCAGCAAGT # Right flank : TGTGATCGTGAGGCATGTAGTCCGGATCTTTCTCGTGGCCAGACGCCGCACCCGCTGACGGGTTGGCGCGCCCGGCAGTTCCCGCTTCGCATGTCGGGTTCACATGGGCTCGGATGCCGAAGGCATTGGCGTCTCACCTAGTGCTGCATGAACCACGGGCCGTGGTCACGTCTGTTCGGTTGGGTTCAAGCTGATCTCGGCCCAGACGGTCTTGTATCCGGGGTGGCGGGTGTAGTCCCAGGCGGTGGTGAGCTGGTCGATCAGGATCAGGCCCCGCCCGCCGGTGTCGTCGGGCGTGCTCAGCCGCGGGTGGCCGGGTCCGCCGGTCGGCGCGCAGGTGATGGAAAAGGTTCACTCGCTCGTCGCACCAGGCCGGGCCGGACTATCGCCTGCACGGGCAGATCGTTGAGCCCAGGCCCTCGGCGGCCGGACAATAGCCGATCATTGGCCTGCCGCCGAGGGGCGCCGGCGGATCCGACGCCGAGGCGCTGGTGTTGCCC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGATCCG # Alternate repeat : GTGCTCCCCGCGCATGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4485894-4485499 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023396.1 Nocardia wallacei strain FMUON74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4485893 29 100.0 32 ............................. GCCATGAACGCGCTGTAGCCTGACCTGCACCA 4485832 29 100.0 32 ............................. GCACCCTGGCGAAGCGCTACCTGCACACCGGC 4485771 29 100.0 32 ............................. CACCTGTACCGCAACGAAGACGGAAGCTGGCC 4485710 29 100.0 32 ............................. TACGGCCGTCGCGTGCCCAAGCTGCGATCGAT 4485649 29 96.6 32 ............................C TGCTGTCGGTGTGCTTCGATGTCGCCGCGCGC 4485588 29 100.0 32 ............................. TTCGGCATCGAAATGCGCCAGCTCGACGGCTT 4485527 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : GGGACGAACACAACAACACCGTCCCCGGCGGAGCCGGCTACGGAGACGAATTTTGACAGTCATCGTCCTCACCGCAGTCCCACCGGGACTGCGCGGCCACCTCACCCGATGGCTCCTGGAAATCAGCCCCGGCGTATTCATCGGTCACATATCCACCAGAATCCGGCACCTCACCTGGGACCGCATCATCGAATACGTCGCCGACGGCCGCGCCATCATGGTCTACACCGCACACAACGAACAACGACTTGAATTCAAAGTCCACGGCCACGACTGGACCCCCATCGACTACGACGGCCTCACCCTCATGCAACGACAAACCGTCCCCGACTACACACCCGCACGAAGGACTCGGACCACACAAGACACACGCAACAGCGGCGCACCACAACTGTCCGACGAAACAGTGTGGCGCAGACGCGCAACACGACGGAAATTCAAACCAAAACAAACCGAATGAAATTCGCTCGTGGTCACCACAAAGCGCCTGGTCAACAAGT # Right flank : GTGGGGTGGGCAAGACCACCACCACCGTGGTGCTCCTCGCGCGTGGAAATGGTTCAGAACGTCAGCGGTTTTGGTTGTTCGGGACCGGGGTGCTTCTGTCGGCTGGGGAGTACTGCTTGGTGCAGAGCCCGTGCGTGTGTGCGTTGGTTGGGGAAAGTCTGACGCGTCGTTGCGGGTTGGTCTGGCGTGCGCGTGGGGGCCGTGTCGGACGGTTGGAGTCGATCTGCTCGGTTGGTGTCGTGGTTATTCGCGTGTGAGGACGATGATTTCGTTGGGTGGTATGGGGCCGTGGAGTCGGCGTTCGAGGATGGTGGTGGCGTTGACGATGGTCTGGCAGGCGGTGCGGATGTGGCGGGGGCCGTGGTGGTGGTCGGATTCGAGGGCCAGGCTCAGGGCGGTGAGCCGGAACAGGGTCGCGACGGCGGGTGGCATGTCGGTTCTGCGTTCGAGGGCGGCGGTGACGAAGGCGGCGAGTTGGTCGCCGAGGTCGCGTATCCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4497228-4495366 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023396.1 Nocardia wallacei strain FMUON74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4497227 29 100.0 32 ............................. CTACAGGGCGGAACGTTGTGCGCGCACGAAAA 4497166 29 96.6 32 ............................C TGATCCGCAATGGCTACGTGGAGGTTGTGGAG 4497105 29 100.0 32 ............................. TAGCGCCCACTCATCACCGAGAGGACCGGACA 4497044 29 100.0 32 ............................. CAGATGGCATCGACGAGCCACTCCCGCTACCC 4496983 29 100.0 32 ............................. CTCAACCCTACGGCCGCAGGGTTCCACATGGC 4496922 29 96.6 32 ............................A ATCCGAGCAGTCCGACATATTTGTCGTCACCG 4496861 29 100.0 32 ............................. TCGGGGAGGGCCGGGCGAGACGTGGGGACATC 4496800 29 100.0 32 ............................. GCGTGATCGCGCACATCGGGGGATACCCGACG 4496739 29 100.0 32 ............................. TCTCGTTTGCCGTCGCGGTACGCGCGCAGGTA 4496678 29 96.6 32 ............................A AACGACTGAGGATCCCACCGAAGGCAAGGGCA 4496617 29 100.0 32 ............................. ACGGGCGTGTGTGTGGTGACCGGAATGTTCAA 4496556 29 100.0 32 ............................. CTGATTGCCGCCGAGGAGCGGTGGGAGCGGCT 4496495 29 100.0 32 ............................. GCGTTCACCGTGGCGACGAACTCGAGGTTCGG 4496434 29 96.6 32 ............................C CAGTTCCCCGGAGGCAATCACAGTCGGGCACA 4496373 29 100.0 32 ............................. GGGACGCGCATCGTCGTCCTGGACTACCCGAT 4496312 29 100.0 32 ............................. ACCACCGGTTGTCCACCTCGCGGTAGAGGTTG 4496251 29 100.0 32 ............................. CGTCGCAGTCGGCCCGGTCAGCGCAGCGAGCG 4496190 29 96.6 32 .......T..................... TCGAGGCGGTCGACGACCATCGCCAAGTTCTC 4496129 29 96.6 33 .................A........... GAGACGACCAAGACCTTTTCCCGTCTCGGCAGC 4496067 29 96.6 32 ............................C CGGGGAAACTGATCGGCGGCGTGCCCGCCGCA 4496006 29 100.0 32 ............................. CCGTCGACTTCCGCTTGCGGTCCGCACTGGAC 4495945 29 100.0 32 ............................. CCACTCGCCGGTCGGCCGGTGATATCCGAGCT GC [4495926] 4495882 29 100.0 32 ............................. GGTCGCGCGCCGACTGAGGGCATGTTCGCTGG 4495821 29 96.6 32 ...A......................... GAACGCATCTTCCGCGACGAGATCGTCAAGCC 4495760 29 96.6 32 ............................T CCTAGGAGGGTAGATAGCTGTACACACTGACA 4495699 29 100.0 32 ............................. TTGACACGGCGCACCCAGCGGCCGCCGCCGGT G [4495688] 4495637 29 100.0 32 ............................. CAGGGACCATCCCTGACGAACAGCACCTACGC 4495576 29 100.0 32 ............................. ATGGCACGCCAGGACGCCCAGTGCACCTCGGT 4495515 29 89.7 32 ............T............GA.. GGTCGTGTGCTCGACGTCATGGGCACCGCGGC 4495454 29 79.3 31 ...G...A.T..G.T.........G.... GGCGATGGGTGATGACCGACGACGGCCAGCC 4495394 29 75.9 0 ...T........T.C....C.G...C..C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 97.2 32 GTGCTCCCCGCGCAGGCGGGGATGATCCG # Left flank : AGATGCCGAGCCTCGGCTGTCCTGAGTCCAGGCTCGTGGCGGCCCGCGAGGGACGGCGCCGACGGCTATTCCAGCCAAGCAGAATTCGGTACTGGCACCACCTCCGGTGGTTGCACCACCCGGAGACCGTGTTGCGGCGTAACGGTAGCGTTTAGATGTCGATGCGCTATGCCGTGGGCAGTTGGCATTCGCTCTGCGACGATACGGGTGGTGGCTGACCCGGTACAAGTCGACATCCATCATGTGGCGCCGTTGACCGAGGCTCGGCGCTCCGGCGTCGAGACGCGGTGCCGGAGGAGGGGAATGTTCGCCAAGGATCTCGACCATCCGCAGCCACTGGCTGTCACCGTCGGGGTGAACCGGGCGACGGGTGATCAGGATCCGGCGCAGTGGTTCCGCCGAATCCGGAAACCGGCCCTCCGGCCGCCGGTTAGGACCTGTGCGTGAGCAAAGTGAATGAATTCCCGGGTGTGTCGCGGTAACGTAGCAGGTCAGAAAGT # Right flank : CGCGTTGGTGTGCGGCGATTTGCCGGATGATGCCCACGGCCAGGCGGTGCTCTTCACGCACGGGGTGATCCCATGCGGTGCCGGATGCCGTGTGAGGCGAGTGGGGTCCGCGTCGGAGCGGAGACGTTTCGTGGTGTGGTCGTTGGCGGTAGGCGCTCTCGCGTGGTCGTGGTGGTGAGGTGCGGGCTCGTTGTTATCCGCGGGTTTGTGTCAGGGGTGGTCCGTTTCAAGATCGAAAGTTGTTGCTGTCGTGTCGGTTTGGTGGGGGCCGGGGGTGGTCGTGTCGTCTGTAACGTGTCGGTGGGGCGTGCGATAGTTCGGGCATTCTGTTGGTCTGCGTGGGCATCTGGAGGGGGACTGCGATGGGGTTGAGTGAGGCGGCGCGTTCGGTGTGGGCGAAATCGCCGAATAGCGTGGGGGATTGGCTTCCGTTGTGGCAGCACATGGATGATGCGGCGGATGTGGCGGGGTGGTTGTTCGATCGGTGGTTGCCGGGGTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //