Array 1 41846-39313 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAP01000021.1 Pseudonocardia thermophila strain DSM 43832, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 41845 30 96.7 32 .............................C ACCCGACGCCGATCGTCGGATCGAATCGGTGC 41783 30 96.7 31 .............................T CCTCGCCGGGCTCGAGCTTCACGGTCGGGCG 41722 30 96.7 31 .............................C CTGGACGGGTTTCAGTTCACCCCGACCTACG 41661 30 96.7 31 .............................A ACCGGACGGACGGGCCCCCGCCCCCGATCCC 41600 30 96.7 31 .............................C CCGTCCGATCCGAGCCGGTGCCGCAAGGCCG 41539 30 100.0 31 .............................. GATCGACTTGCTTCCTCGTTGACCAGGCGGG 41478 30 96.7 31 .............................A CCGCGGCGTTCGTCGACTTCACCGACGGCGG 41417 30 100.0 31 .............................. CGGCCGACGGGCAGACGTGGCCGGTCACCCT 41356 30 96.7 31 .............................C TCGACAGCGGGGTGGAGCTGGAGGAGGTGAC 41295 30 100.0 31 .............................. CCGTCTCGTGGAACGCGACGTTCACCTCGGT 41234 30 96.7 31 .............................C AGACGCAGCGTCTCGGTCGTCAGCGGCGCCG 41173 30 100.0 31 .............................. GCGAGCATGTCCCGCCCCATCTGGACAAGGA 41112 30 100.0 31 .............................. GTGCCCGTGGTGTGTGGGAGACGCACGAGGC 41051 30 96.7 31 .............................T GCGCCACTGGCGCGTGCCCTGTGAAGTGAGG 40990 30 93.3 31 ............................TC GGGACCGCTCATCGGACGGGACGATCGGGGA 40929 30 96.7 31 .............................C GCTGATCCCCTTTACGGTGCGGACGGTGAAG 40868 30 93.3 31 ............................TC GAGGGCGCATTGACAGCTGAGACGGTGGAAG 40807 30 93.3 31 ............................TT GCCGCTTCTCTTCGCTGGTGGTGTGCCAGAG 40746 30 96.7 31 .............................C TGCTGCACCTGTGCCATGAGGACCACATGCG 40685 30 96.7 31 .............................T TCTTCGCGCCGCGCACCCTGATCGTGTAGGT 40624 30 93.3 31 ............................GC CAGCTTCACGCCCACCTCGTAGGTGGGGTAG 40563 30 100.0 31 .............................. CGCTCCGGGTGATCGAGTGGTACGAGGGCAT 40502 30 100.0 31 .............................. TCACCGCCACCTTGGCCAGATCGCCGACCTT 40441 30 96.7 31 .............................A GCGTCGACAGGCCGCGCCGCCGCCGGTGACG 40380 30 96.7 31 .............................T CGGCCGCGGTCGAGCTGTGGACGTCGATCCG 40319 30 100.0 31 .............................. CCCGCCGCGGCCGCTGGCCCATCGCAGGCGA C [40303] 40257 30 100.0 31 .............................. CCCGCCGCGGCCGCTGGCCCATCGCAGGCGA 40196 30 100.0 31 .............................. AGCGGCTCGCCGCGGAGCTGGCCGAGGCGCA 40135 29 93.3 31 .....................-.......C CGCAGATCTGGTACCTCTCGTCGGCGGGCCG 40075 30 96.7 31 .............................T CTGCGCGCCGGAGCCGAGCAATTACGGCGCC 40014 30 90.0 31 ......G.....................AT GACCAAGCGGTGGGAGGAGTATCGCAACTCC 39953 30 93.3 31 ............................TT CCTTGATGCGGAAGATGGCCACGCGCGGACG 39892 30 96.7 31 .............................A GCTTCGCGGTGCCGCCCCAGCCGCACGACCA 39831 30 93.3 31 ...................T.........A TCGGACACGGTGTTCTCCTTGGGGTTGGGCG 39770 30 100.0 31 .............................. AGTCCACCATGTCGGTGTCGCCCGAACGGCC 39709 30 96.7 32 ............................A. GAACAGCAGCGGCGGGAGATCGGGGCGGCCGG 39647 29 96.7 31 ........-..................... GCTGGGACCTCGCCGTCGTGGCGGCCCGGTT 39587 30 100.0 31 .............................. AGACCCTCCCGCCGGTCTCGGGCGAGGACAG 39526 30 100.0 31 .............................. CGGGCTGCGGACCGCGCTCGATCTCGTCGGC 39465 30 100.0 32 .............................. GCACGCCGATGATCTCGCCGTTTAGCCGCGAT 39403 30 96.7 31 .............................A TCGGCAACTGGTCGAAGATGTCGACCCGGGG 39342 29 86.7 0 .....................AA.A-.... | C [39334] ========== ====== ====== ====== ============================== ================================ ================== 42 30 96.8 31 GTCGTCCCCGCGGACGCGGGGGTGGTCCCG # Left flank : TCGCCAGGTCAGGGCTGGAACCGCGTACGGCGACTCCGAGGACTTCGACACCTCCTACGCCGAGATCTCCGGCTGGCTGGAGGAGGACTGGTGACCGTCCTCGTCGTAGCGGCCTGCCCCGTTGGACTCCGGGGCCACCTCACCCGCTGGCTCCTGGAGATCTCCACCGGCGTCTTCGTCGGTCGCGTCTCAGCCCGCGTGCGTGATCGGCTCTGGGAACGGACCCTCGACATGGTCAAGACCGGGCGGGCGATCATGGTCTTCGCCAACGACTCCGAGCAGGGCCTGGCGTTCCGCGTGCACAACCACAACTGGCAGCCCATCGACATCGACGGCATCACGCTCATGCTGCGTCCGAACTCATCGGACGCCACGCCGCCCGTCTCGGGAGACGACCGGACCCTCGGGTGGAGCATCGCCAGCCGTCGACGAAGGTTCAGGAGAGGCTGAAGTCGAACGAATTTGATGTCAGGCGGCGTTATTCGCGCAGGTCAGGAAGT # Right flank : CCACCGCGTCACAGCTCGGACGTCCGTTGCTCAGACGCACGGTGTGAGGTCGACACGCCGTGACATCACCTGTGACGCGAACTGTTGGCCGACAGGGACCGCGGAGCGCGGTGAAGACGCTGTTGCGTTGGCAAAGCCGCAGGTGGAAGGCATCGACCGCGTCGAGGTTCTACCTTCCAACTGGCTACGCGGGTTCGATTCCCGTCGCCCGCTCCACCCTTGACCAGGGCAAACGCCCTGGTCAAGATCGTCAGTGGGGCCCACGCGACATCAATCGCGACACGAAACCCACTGCTCTGTTGCCGCGCGACTGTGCACGGCCTCTACGAGGGCGTCGTCGCCACCTGCTCTACCTCTCGCCACCGAGCGACGCGGAAGCCGCGCACCGTCTTGTGCATCGCCCCGCGTGATGCACGTGGATCGTCACTCCCGGTAGAACTCTGCCGTACCTCAACCCGCCGTCTCGACGATGCGGCGCGCGAGTGTGATCGCAACTCGCG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGGACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51153-52534 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAP01000021.1 Pseudonocardia thermophila strain DSM 43832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 51153 29 100.0 32 ............................. ACCGTCTACGTGCGACCCGCCCCGGCCAGCGC 51214 29 100.0 33 ............................. CCGCACCGGGTCGTGCCGGTGCTCGCGCAGGAC 51276 29 100.0 32 ............................. TGCGGCTACTGCTCCGGCGCACCAACCTCGTA 51337 29 100.0 32 ............................. ACCAACGATGACGTGATCTTCGCCTACAACGA 51398 29 96.6 33 ............................A CACCGCCATGCTGTCTGCCGCCTTCTGGGTCGA 51460 29 100.0 32 ............................. CACCGCAACCACCCCAACGCGTGGGTGCAGTG 51521 29 100.0 32 ............................. CAGCCCGCGCTGGACAAGGTCCGCGATGCGAT 51582 29 100.0 32 ............................. GAGTTCGCAGCTGCGTACGCGCACCGCGCATC 51643 29 100.0 32 ............................. GGCACAACCTCGCGGGCGCGACCCGGGCGGAA 51704 29 100.0 32 ............................. GGCAGGGTCGCCGCCACTTCCGCCGCCTCGAG 51765 29 100.0 32 ............................. CCGGACCCGGTGTGGCAGGTCGTCGACCCGGA 51826 29 100.0 32 ............................. CACCTCAGCGACAGTGGCCATGATCCCTAACC 51887 29 96.6 32 ............................T CGGATGTACTTGCTCGACGGGTACATCGCGTA 51948 29 100.0 32 ............................. TGCACGATCCGCGTGTGCCACAAAGTCACCGG 52009 29 100.0 32 ............................. TTGTCCGACACCCAGCCGGCGGCAACCGTCAC 52070 29 100.0 32 ............................. ACGCTGCGCGCCTTCCGTGAGGCCAGCGCCCG 52131 29 100.0 32 ............................. GTGTGCCGGCTGGCGAGCGCCATCACGGCGAA 52192 29 96.6 32 ............................T GACCCGCTCGTGACCACGTAGACCGACGAGCA 52253 29 100.0 32 ............................. CAGGCCTTCTGCAGCTGCGCGCCGAGCTCGAC 52314 29 100.0 32 ............................. CGCGTCTACTGGCACCGGGGCACGCGATGACC 52375 29 100.0 32 ............................. TGCTCGGCCTCGTCGAGTGCGCCGCCGAACTT 52436 29 93.1 41 .......T....................G CCGACGTCACGCACCTGCGCTGGAATCTTTCGGCAGACCAA 52506 28 79.3 0 ...A.......A........AC.A.-... | T [52524] ========== ====== ====== ====== ============================= ========================================= ================== 23 29 98.4 33 GTCGTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : TCCGAGATCGATCTCGGTCGTTCGCGTAGCGCGGGTCCGCCGCGAGGCCATGCTCGCGCATGACGTCCGCGAGGGCGGCGCACTGCACGGCGAACGCGGGACTCGCCTTCCCGACATCGTGCACCGCGGCCGCCCAGACGATCAGCTGCCGCAGCTCGGTGACGCCGAGACCGAGCATCTCCGAGAGACGGGTGAGGACCGACGAGGGAATCCACTCATCAACCAAGCGGCCGGCTATGGCTGCGGTGTCACCCAGGTGCTGATGGAGCGGGAGCCACTCCGTCACGATCCGGTGGTCAAGTTCATCGCGGCCGGTCTTCGCCCACACCGACCACCACGGCTTCACGTCGTACACACCTCACTACTCTTCGGGGTCGACGTCTCGGGCAGTCGCGGAAGATCCCGGCTCTGTTACCTTGTGCTGGTAGATCATCGATCGGCGCTAGCTCATCTTGAATCAAATCGGCAGGCTCGGCTCGCGTCGTCGCTGGTCAGGAAGT # Right flank : CTGCGATTGTCAGGCTCCTCTGTCACCGTGTGGTCGTGGACATCACCGAGTGCCTTATCGATGCAGTCTCTGCAGGGAACCTGCGGGTTCGGCGCTCGGACTTCGCCCATGTTTGGCGCATGGCCGAGCAGCTGGCGGCCGATCACGGGCATCAGCACCTGGATGACTGGTATCCGGCCGCCGTTGCGATGACATGCCGATGGCTGGCCGGCGCAGTGGTGACCGACCATGCGGGATGTCGCGCGCCGACGCCGGCTCCGGTGACGCGGCGGCAGGCTCGGGCGTTCCCGGAGTTGATCGACGCAGAGCTGCTGGCGACCGAGTTGTTCACGGGGCGGGATCCCGGAACGGTCCGGGCGCGGCCTGGTTGGATCGCCGGGGTCAGTGCGACGTTGCAGTGGGCGTGGCGCGGTGACGGTCCGCCGCCGTTCTCGCTGCCGACCTCTGGCGGCGGGTCGACAACGGCGAAGACCCGAGACAGCTGGGCACGTCAGCGAGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //