Array 1 855436-854746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPG010000001.1 Streptococcus oralis strain KK38 Soralis_KK38_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 855435 29 100.0 43 ............................. TTACGTTCAGCAGTTTCACGAGTTTCCCACTTACCTAGTTCAG 855363 29 93.1 44 ..A.................C........ GTTTCAAACTTAGGAATGTTGTTTACTACCGTTATAGTTACTTC 855290 29 96.6 37 ....................C........ TTTTTATTCATGAAAGGTTCCTCCTTTTGGATTTGAT 855224 29 96.6 43 ..A.......................... GAAGCCTACTACTTTTTTTAGGCTTCTCCTTTGGTGCATTCTT 855152 29 96.6 54 .......T..................... TCACTACGATAAGTAAGACCATGTTCATCAATATCCAACATTACCCATCTTTTC 855069 29 100.0 48 ............................. TTTTTACATTGACCGAATGTTACGTCTTTACTATCTTCCACTGAACGA 854992 29 93.1 44 ...C.C....................... TTTTGAGCTCTTTGATGAATGTTTCTAAAACCCAGTCTTCGAGT 854919 29 96.6 49 ...C......................... GCTTCTTAAGGAATTTTTTGAATAATCTTGCGAGATGTTTTTCTTCAGC 854841 29 93.1 38 ...C.C....................... TTTCCTCCTTAAAGTACCTCAGTTGCCCAAGGTCTGAT 854774 29 79.3 0 ..A.......G..............GTTG | ========== ====== ====== ====== ============================= ====================================================== ================== 10 29 94.5 45 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : AGTTTCTGATAAACTGAAGCTGCAGAAGGCTTACACGACCTTTAAAAATCAATACCTGCTTCCAGAATTATGCCCGCAGGAGCAAGCAGTGGAAATCTACGAATTGCTGCAAACCTCTCTCTATATAGAGAAGCATATCAATCTCCTAGATAGCCAAATCAGTGAACTGCATGATATCAGCCAGACGGAAGCAAGCAATAAATTGAATGACAGAGTATTAGTACTAACCGTTTTAAGTATTGCATTAGCAATCATTCCGAATATCAAAGAACTGCAGGAACACTGTCTGACGATTTGCAATCTGAGCCTGACGTATTCATCTTGGCTTACTTTGCTTATTCCTCTTTTGACAATTGCTTTCATCTATTTCAAAAAGCGAGAATAAATGTATATTATCTTGACATACGATCTTCATCACAAGCGCGTGCCTAAGGTTTCGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : TCTGTCTTTGTTTATCTCCGAGGGCACCAAAAAAGCGAGCAAATTCTTGTCTGCTGGGAAGTATGAGAATTTGTTCGCCTTTTGTTTTGTAAGAATTATCAAGAAAAATTCTCTTAGTAGGAGAGTTTTTCTGTGTTTCAACTACGATAGTATAGAGTTTAAGTTAGATGGCTGATCAGTTTTTTGTTATTTCATGATAGTGTTACGAATATTTATTGGTCTATTGAGTTAAATTAAAAACATTATTTTCTATTTCATTTATCGAAAAGACCTACTATCCAGTAGCCCCCCTACTGTACTAGTCCTTTTTCAGTTTATCTATGGTATAATAGAGGATAGATTTATCAATTGGAGTATGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGCACATTTCTAGATGGAGAGGGTCGGTTTGATATGGAACGCCTTAAAAACTTACTTGTTTCCTACAAGGAAAAGGGGATTTATTTTGCAGTGGCTTCAGGTC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTCCCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 858121-857114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPG010000001.1 Streptococcus oralis strain KK38 Soralis_KK38_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 858120 29 100.0 40 ............................. TATATACAGTCGGCTTTTCTTCTATAATCTCTGCTGTTGC 858051 29 96.6 43 ...C......................... GCTTGTCCCCAGAGTCCGTTAGTCTCTGCGTCGAATGAGAAAA 857979 29 96.6 42 ...C......................... TTACTGTAATTCAGCAAGATCAGCAAGATTAATCAATAAACT 857908 29 96.6 49 ...C......................... TTCAGAACCCACATATAGAACTCACCTTTCGGTGACAATCCTGCTTCTT 857830 29 96.6 46 ..........G.................. TCACCATCGACCTTATAGTCGATGACCTGAAAATCTTCTTTTGGAA 857755 29 100.0 48 ............................. AATTGACCGCTATGACCTTCAAATTCAGCAATACAACGTTGTACGAGT 857678 29 93.1 47 .C.C......................... ACTATTAACCCCGTAAAAGATCCCTACTTTCAAGAAACAGCAGAAGC 857602 29 96.6 39 ...C......................... ATCTTCAAGACTATTTCGTCATCTTTTTTAATGAACTGT 857534 29 100.0 44 ............................. TCTATGGTTTCTCCTTTTAGACTTTTTAGGATATATACTACTAC 857461 29 100.0 53 ............................. ATAGCACCTAAGAAAAAGTGAATATCCTGACTTAACTTTATTATTGCTATCCC 857379 29 100.0 52 ............................. GAGTTGAAGGGTGCTCCATCGTGGCTCTGATGCTGGATTAGAGCGGACATCT 857298 29 100.0 54 ............................. TTGCATTGTTGACAACCCGGCTGACCGTAAATTACTATAGCCATTTTAAGTTAT 857215 29 86.2 44 ACCT......................... CTCTTTGCCTTGGTTCATTTTATTTGCAATGCGATGAGCTTTTT 857142 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ====================================================== ================== 14 29 96.3 46 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCGGTTATCGTGGATCGAGTGATGTTGAGTTTGATCAATAAACATCAAATCAATGCTACAGATCATTTTGAAGAAAGGGAAGATGGCTCGGTTTATCTGAATCGTGAAGGGAAGTACATCGTCTTGCGAAGTTTTGAGGAAAAACTACAGACGAGGCTAGTCATAGGAGGATCGACCTATACCTATGCCCAGCTCATCCAGCACGACATTCGTCAGTTTAAGAGAATCTTGCAGCAGGATGGGGACTTGAAACGCTTTAAACCTTACAAATATTATTAAAAAGTCGGTCGATCTTTTCGATATTTTGTATATTTTTAAAAAGCTATCAACCAAGCTGTTTATAGGTGCTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : CTTCAACTGAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCATGAGGAGATATTTGAATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTCTTACCCTTTGCGGCCAAGGAACTGGAGTCTTTTCCGAAGTCTTCCAAGTGGAAGAAACTCAGCCAAGATGCTAATGAGCTTCCCTATCTAAACTTAGAAGATGCTGAAAAAAGCGAGCGGTTAAAGTACGCTTATCGGCGATATTTCAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCAACAAACTTGAATGTTATGATCTGACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAAAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTACTATGATGAATT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1017661-1017493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPG010000001.1 Streptococcus oralis strain KK38 Soralis_KK38_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1017660 36 100.0 30 .................................... TGAAACCCTCTTATCTTTGGATGTGACGGA 1017594 36 100.0 30 .................................... CGTTTGCAACATCCAAAATATCTCTAGAAC 1017528 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTTTGATTAATCATAGCGATTCATTATATATTGTTTCATTTCCTTCCAATGAAGGTTATCTTCATGTATCGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATAAAAACAAAATTCCGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGCACAAAAATCAAAATTGACGAATTTGA # Right flank : TGCAATTCAATTTATTGATTTACTCTCATTGTGATATATTCATACAAAAACCGCTCTCCAGAGCGGTTTTCGTCTATTCTTGCCTTTTGCTACAATACCCACGTACGGATAGCATGGGCAACGCCAGATTCATCATTTGTTTTGGTGATGTATTTGGCGATTTTTTTGAGTTTTGGATTTCCATTTTCCATAACAACGGGGTTGCCAACGACTTCCAGCATGGCGCGGTCATTTTCTTCGTCCCCAATCGCCATGGTTTCATCTTTGGTCAATCCGAGTTTTTCAGCTAGGTGAGTGATGGCTGAACCCTTGTCTACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCTGATTTGTTGATAGAGTAGCGCTCGTAAAATTCGGCTGGAATCTTTTTAATCGCAGCATCGAGGATTTCTGGTTCATCGATAAACATACACTTGACGATTTCCTTGTCAGCCATTTCTTCGGGAGTACGGTAAAAGATAGGCATGTTGAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //