Array 1 3691843-3689720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060139.1 Croceimicrobium hydrocarbonivorans strain A20-9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 3691842 47 100.0 30 ............................................... AAAATGTTCTCGTGCGCTTTCAAAGGCATC 3691765 47 100.0 30 ............................................... ATATCGAGGTGACAGAAGATGCTAGAGTAG 3691688 47 100.0 30 ............................................... TGCCAAAGGGTTTCGTCTGTGTCTTTTAGA 3691611 47 100.0 29 ............................................... CGGTCGTTAAAAATAGGAGTTCTTTTCCG 3691535 47 100.0 30 ............................................... AGCATAATAGTGGTTGTCAGCTGTTAGCAT 3691458 47 100.0 30 ............................................... AATATTTTTGTTTATTTGTGTAAAATCAAT 3691381 47 100.0 30 ............................................... TTGCAAGGTTTGGACATACCTGCAGCGATT 3691304 47 100.0 30 ............................................... TGGTATGACACCAGTGTAGTACCGGATCCA 3691227 47 100.0 30 ............................................... TTAAAATATACTGATATTAAACAGAAAAAA 3691150 47 100.0 30 ............................................... CAATATGCTTGGCAATCATTTCAAGGGCAG 3691073 47 100.0 30 ............................................... TTTACGGCACAGCGGATGACTTTATTAGTA 3690996 47 100.0 30 ............................................... GACCAAAGAGATTCTAAGCTTTGTCAAATC 3690919 47 100.0 30 ............................................... ACTTTTACACTGCTCAAGAAGCAAAGGATG 3690842 47 100.0 30 ............................................... GGGCAATTCTTTTATGTACACTCAAAAGGA 3690765 47 100.0 30 ............................................... TTGCAACTGAACTAAGGAGTGTTTATCATT 3690688 47 100.0 30 ............................................... TATTTATATACCTTTGATTTTAACTCTTGT 3690611 47 100.0 30 ............................................... GCACACTACGATCACCATCTACCCCCAGAT 3690534 47 100.0 30 ............................................... TTGTTTACATTGGGCTAGTGAAAATGGTAC 3690457 47 100.0 30 ............................................... CTCGTGGTGGTAGTCGTTATTCTGAAAGTA 3690380 47 100.0 30 ............................................... TTGAAAACAAAATTAAACGTATTGAATCTG 3690303 47 100.0 30 ............................................... CTATCTCTAGAGAAGAAGTTGATGAACGTG 3690226 47 100.0 30 ............................................... GAGTGCGAAAAGGAAACGGCCAACAAATGA 3690149 47 100.0 30 ............................................... TACACCGGGTTAAAGTTTACGGAGGTAAAA 3690072 47 100.0 30 ............................................... ATGTTATCACTTGTAAGAGTGCAACGCAGG 3689995 47 100.0 30 ............................................... CACCGTTAAATATTACGTTTAGATGGCCTT 3689918 46 95.7 30 ...............T-.............................. TACTTTCAAGCTCTGAGATTAACCATTCAA 3689842 46 95.7 31 ...............T-.............................. CCGCTCACCCGCACACGCGTATTATAATGAA 3689765 46 93.6 0 ....C..........T-.............................. | ========== ====== ====== ====== =============================================== =============================== ================== 28 47 99.5 30 CCTGTGACAGAACTAAGTTACAATTCAATTTGAAAGCTAATCACAAC # Left flank : CCGCTTAGAGAATGGTGTGAAAATGCGTGTGCTCAACATTATTGACGACTACAACCGCGAAGCTTTGGCTTGCAAGGTATCCAGCAGTTTCCCTTCCGAACATGTAGTAGAGCAATTTGAGCAGCTAATAGAGTGGCACGGTAAGCCATTTACCATAAGAACTGATAACGGAACAGAGTTTATGGCAGAAGCCTTTCAAAAGTTTTGCAAACGACATCAGATAAAACACTTAAGAATACAGAAAGGAAAACCTATGCAGAATGGCTTTTGTGAACGCTTTAACCGCACCCTGAGAGAAGACGTGCTCAACGCTTATCTCTTTGAAACGAAGACGCAGATGCAAGAGTTAATCAATCATTGGATGGAAGACTACAATCAAAACCATCCGCATTCTTCTCTTGGAGACATGTCTCCAAGAGAATTTAAACAAAGGCTTATTGCCTAAAATCGATAATTTAGACCTGTTGGAATAATGGGGGACTTACACATCCGGGGCCACC # Right flank : TTCCGGGGGTGGTTTCCATTGCGGATATGCCCTGTGACAGAACTATTTGCATTTTTTAACACCAAAAGATAAGAAACTAAAGGAAAATAATTTTTAAAACCTCCTTTAAAATATTAAGAAGAAAACGGTTCTACAATGCTCCTTTACACCTTATCCTAATCTCCCCTTCCCTCAAGTCCAAGTTTACCTCCCCTCCTATCTCAAAGCCTAGGCTTTCCAGCCATTTCCCTTCCAGGCGGATCTCAGGTACTTTGGTAGAGTCATAAGATCGTTGGCGATGCTTGGCATGTATTTTAAGAGTTCTATTGCGAGTCATATCTGTTCGTTAAAGCGAACACAATATAAAAAAGATTTGATCAAGTTTGGAATAGTGAACAAATCAGATGAGAAATATCTACAGTTCTTAGGTTCCAGGATCAAAGAACTTCGCGAAATAAAAGGCTTAGATCAAAAAGCTTTTGCTTTCCATTGCGATATAGGTCGTACTCAATTGCACAAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGTGACAGAACTAAGTTACAATTCAATTTGAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 3693060-3694645 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060139.1 Croceimicrobium hydrocarbonivorans strain A20-9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3693060 47 100.0 30 ............................................... ATTCCTGTTTGGCGAAGGGTTCAATGATGA 3693137 47 100.0 30 ............................................... TGCGGCGGCTAGCGCGACGGCAGCTGAAAA 3693214 47 100.0 30 ............................................... ATTAAGGGAGGTTGTTAAACAGGCCGTGCC 3693291 47 100.0 30 ............................................... TTAAAAAGGATTCAATAAGCTCTTCAGGCA 3693368 47 100.0 30 ............................................... GCCTTCGGCCCAAGCTACAGGCTCTGCCAT 3693445 47 100.0 30 ............................................... TAAGAGCGTACCAGTCAATGTTACCTTTAG 3693522 47 100.0 30 ............................................... GGATTAATATTGTAAATCCCGTTTGGATCA 3693599 47 100.0 30 ............................................... CATAATGAGCGCATTAAGCTCATTCAGGGT 3693676 47 100.0 30 ............................................... GCCTCAATCATACTGCTGAAGGGATTATAA 3693753 47 100.0 30 ............................................... TACACTATTCTCTAAGCGCGCCTGGTTTTG 3693830 47 100.0 30 ............................................... GCTCGCCTAAAATGTCCGCCGTGCTCAATG 3693907 47 100.0 30 ............................................... TATTCATATCCCCTTCAGTGGCGGCCATAT 3693984 47 100.0 30 ............................................... AAAATTGCGCATCACCTGCGTATTTCTGAG 3694061 47 100.0 30 ............................................... CTTTCAGAAGCACATTAAGCAAGGACAAAT 3694138 47 100.0 30 ............................................... ACTTCCTCGGTTTGCCCCTTGAAGCTAAAA 3694215 47 100.0 30 ............................................... GGCCGTTGCCGCTGGGCTCATTACTTAAGG 3694292 47 100.0 30 ............................................... TTACGCGCTCATAGGGGCCTATCGGTGCAA 3694369 47 100.0 30 ............................................... TAATATTTGGAAATAGGCGAATTAGTGATG 3694446 47 100.0 30 ............................................... AGCACTCCCTTGCGGCGCTACATTCAGTAT 3694523 47 100.0 29 ............................................... TAATTGATTCGTTTTGTCTTACAAATGTA 3694599 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 100.0 30 GTTGTGATTAGCTTTCAAATTGAATTGTAACTTAGTTCTGTCACAGG # Left flank : CGTACCAGCGTAGCTTTTCCTCTACCTCCTTATCGTCTCGCTTGGATATATAGTAATATCCAGAGCGCTCAAGGCTAATGATTTTACAGGCCCTGGCAGTACTGACAGCGTAATCCGCTTTAATCTGCTTTGCTAAAAACCTCTTCTGACAGAGCCCTAGAGCTTTTTTTCCACCACATCCTTAAGGATCCTGTGGTCTAAGCTCAAATCCGCATACATCTGCTTTAGCTTCGTGTTTTCTCGCTCTAACTCCTTGTACTTGCGTAGCATTGCTGAATCCATGCCCCCGTACTTCTTGCGCCAGATATAAAAAGTATTGGCGCTTATACCTAACTCCTTGCAGATATCCTGTACTTTCTTACCAGCCTCATGCTCCTTTAAAGCCTGGCTGATCTGGCTTTCACTAAATCTTGATTTTTTCATAGTCAACAGTTTAAATTTACACACTTTTAAACTGTTGGATTTTTTGGGGGACTTACAGATGGCCCAGGTGAAAGCTT # Right flank : GGTACTGTGACGGACTAGGTTGACAATCAGGCGGGTAGGCTCCGATTTTGGAATTGAAAAATGACCTAGAATAGCTCCAATTGCTGCGGGGTATCTGGTTTTTCTATTTCTGATTTACCACGAAAAAATTCCATCATGCCAAACTGTTTATCTGTAAGAGAAAATAGTATCACTTCCCCCTTGGGCGGTAAGAAGCTTTTTACCCTTTTTATGTGAACATTAGCATTATCTCGACTGGAGCAATGTCGTGTATAAATCGAATATTGCATCATCGTAAACCCATCCTTTAGAAGGTTTTTTCTAAAAAGCGCACCTTGCCTTCGGTCTCTTTTTGTATCAGTCGGTAGGTCATAGTGCACAAATACCCACATGATGCGATAAGCATTAAACTGATCGTGGCTTAACATTGCCAATTTGTATTTTAGGGTAAGCTATTTTGCGACGTTCACCTTCATAACATTGCATTAAGCTGGCCGTTGTTCGCTGCATTCCTACCATTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTCAAATTGAATTGTAACTTAGTTCTGTCACAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //