Array 1 236815-236248 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVV01000005.1 Pectobacterium versatile strain F018 F018LOC_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 236814 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 236754 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 236694 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 236634 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 236574 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 236514 28 100.0 32 ............................ GACATCGTGGTGACGCGCACAGTGCGTAGATT 236454 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 236394 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 236334 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 236274 27 82.1 0 ...........T.C........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAACGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : CTTATCAGGATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACTGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCAGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCAG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 245767-248555 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVV01000005.1 Pectobacterium versatile strain F018 F018LOC_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 245767 28 100.0 32 ............................ TGCGATATACGACACAACGAAATATGCGATAC 245827 28 100.0 32 ............................ ATCATCTGACAACTCGGCGTTAATCAGGTCTG 245887 28 100.0 32 ............................ GGTGACCAATGGCTGATTGTCGTTTATCGTCA 245947 28 100.0 32 ............................ GGGGAGCGGAGCAAAGAACGGGCCGGTGACCA 246007 28 100.0 32 ............................ GCATGAAATCACAGTGCTGACCGGCAAGAAGC 246067 28 100.0 33 ............................ AGCGTGTAAATCAGCGTGACGTCAATATCTGAA 246128 28 100.0 32 ............................ CTACAGTGTATCGGCGGTTTCATAAGCATTCT 246188 28 100.0 32 ............................ TACTCAGGTAGCACCGTTTCACGCATTGCCAC 246248 28 100.0 32 ............................ AGACAAGAACTCTTCAACAGCAGGCGAGCAAA 246308 28 100.0 32 ............................ GTCTGTTAAATCTGTCCACGCGTCTGGTTATG 246368 28 100.0 32 ............................ TGCGGGCATCGTGGCAACGATTGCAAAACGGA 246428 28 100.0 32 ............................ AACGGACCAGATGAAGGGGATCGCCAGTAAGT 246488 28 100.0 32 ............................ TTGTCCGACAGCCGGTAGTACACGTTGTCGAC 246548 28 100.0 32 ............................ AGCCCCAAATTACTCCGCGCTGCGGCCTGATC 246608 28 100.0 32 ............................ AGCCAGATTTTAGCGCTGACAGATGAGCGGGC 246668 28 100.0 32 ............................ TGCATCGGTCGTTCTGATGACGTCAAGCATGC 246728 28 100.0 32 ............................ ACTCAATTAATTTCGGGGCGTTTTTATATTGC 246788 28 100.0 32 ............................ TGGCCGGGGCAACCGGTACACAGTTTCACCTC 246848 28 100.0 32 ............................ CAGCTCCGGGTTGACCACAACGCGCAGGCATA 246908 28 100.0 32 ............................ AATTGACACTGGTTACCTCTGGCCGCGCGATA 246968 28 100.0 32 ............................ TAACGTAAAACCGTCACGCACATTGATGACGC 247028 28 100.0 32 ............................ GCAGAACTCTATCGTCACCTCCGTAAGTTGGT 247088 28 100.0 32 ............................ TGACTTTTCGTCTGAATATGCAAACTGCGTTG 247148 28 100.0 32 ............................ ACGTTCCGCCCCGTAGTTTGATTGACATACTT 247208 28 100.0 32 ............................ TATAACGGAACGACAATTTGCGTACTGATTGC 247268 28 100.0 32 ............................ TGCGTACCGGAAACTGACACATTAAACCCGTC 247328 28 100.0 32 ............................ TTGGCCGGATTACCGGTGATTTTTTTTGAATT 247388 28 100.0 32 ............................ TCAGCAGGTCGCGTCTATTAACCCTGCATGAG 247448 28 100.0 32 ............................ CCATGCGCTTTGGGTTTGATGTGGTCTACAGT 247508 28 100.0 32 ............................ GGAATATTCAATGTTCCCGCTCATATGATTAA 247568 28 100.0 32 ............................ ATCAAGTCTAAGCAAACCGTCACGCAGTCGAT 247628 28 100.0 32 ............................ TTTCTGAGTGGTCAATTTCAGAGTGTCACCAA 247688 28 100.0 32 ............................ TTCAACCGAGCTATTACCGAAACGCACCTTTG 247748 28 100.0 32 ............................ GTACAGCGGAGGTGAGGCTATGAGAATGGACA 247808 28 100.0 32 ............................ GACGAGTGGGAAGCGCTGCGCGTAGGGAAGGC 247868 28 100.0 32 ............................ TGTTAGCGAAAGACATCGCACCTGCTGCTGCT 247928 28 100.0 32 ............................ ATCGACTGAGCGAACTTAGGTTTTTCAGTGTC 247988 28 100.0 32 ............................ GTCAATTGAAAGTGTGGGCGATGACTGGACGC 248048 28 100.0 32 ............................ AACCTGCGCGGTGCCAACCTGCCTGATCGCAC 248108 28 100.0 32 ............................ GACATGCAAGCACGCCAGCGTGATGTCGCTGC 248168 28 100.0 32 ............................ GCACAGGTTGGCACCGCGCAGGTTGGCACCGA 248228 28 100.0 32 ............................ GAAAGCTGAACGGCTGCAAAACGGAAATAGAA 248288 28 100.0 32 ............................ AGCATTTTACGGGATGACCTGGACGGCTTCAG 248348 28 100.0 32 ............................ TTACCGACCGACGATGCTGATAGACCGGATGT 248408 28 100.0 32 ............................ TGACGGGACAATATCAGGCATGGGAATCCTGG 248468 28 100.0 32 ............................ AGACAGTAAGGGATGGTAAAAATATAACAATT 248528 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATTTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACACAGACCCTTTTTATTTGGCCCATTTCACAGGTTTAATAATCAATGAGTTACGGCTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAAGTAGTACTGCGCCAGCGCTCACCCTCGTTAAATGACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGAGTTTATTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAATTGTCCTTACAGGGAAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAACGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGATGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCCTGGAAAACGGCAATATTTGGTTGTACCGACCCCATCTCATCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //