Array 1 85269-80432 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVS01000006.1 Xanthomonas translucens strain XT130 flattened_line_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 85268 31 100.0 35 ............................... TTCACTCCTATTAAATGATTTCAATCCCTGCTCCT 85202 31 100.0 36 ............................... AGCGCAGCCTTGTCGGCGTTGCACAGCTTCACGTCG 85135 31 100.0 37 ............................... GACAACGCCAGGATACTTATCGCCTCGGTTGGAGAGG 85067 31 100.0 36 ............................... GCGGTCAACCATGTTGCTCATTTGGTCCCGCAGCGT 85000 31 100.0 33 ............................... TTGAAGGTCGGCAGCGACAACTGGCGGCCCAAC 84936 31 100.0 35 ............................... TTCAACAACGCGTCCCGCTTGGCAACCTGTTCGTG 84870 31 100.0 35 ............................... GACAGTGACCCAGCCGCTGCCGTCCCACTCAGGGG 84804 31 100.0 36 ............................... TCGTGTTTGGGTTGGTGTGGGTAAAGAATAGCGCCG 84737 31 100.0 35 ............................... CGGGACATCCGGGACGGGATCGTTGTTGATCCGAA 84671 31 100.0 34 ............................... ATGTAGTGCGCGATGACCTTGGCGGTGGTATTCA 84606 31 100.0 34 ............................... ACGCGGCCGCTCCGGTAGGGATGCCGCCATGACG 84541 31 100.0 35 ............................... TCGCCACGCTATCCTCGCTGGGTGGTAAGGTGGAT 84475 31 100.0 35 ............................... TCGTGCTCGGAGTTCATCGCCGCGGACTACCTGTC 84409 31 100.0 34 ............................... TTCAGTTCGATGGCGGCCCAGTCGGCCGGGTTCA 84344 31 100.0 34 ............................... TGTACGCGCTGGCTCGGGACTTGCTGGCGGTCAT 84279 31 100.0 35 ............................... CTGTACTGCTCCCATTGGTACGTGTAGCCGCGGGC 84213 31 100.0 35 ............................... TCGAAGCCGGTTTTAATGGGGTCGCCGAATTTACC 84147 31 100.0 35 ............................... ACCCTGACGCCGTGGCTGGTCCGGATCGAGCAAGG 84081 31 100.0 35 ............................... TTCATGGGTTTCCCTCTGTGGGTTTCTTTGGGCTA 84015 31 100.0 33 ............................... TCCACCATCTTGCTAGACCTGGCAGAAAGGCTA 83951 31 100.0 35 ............................... TGAATGGTAACGGCACCGGCCAAAACCTGCTGGGT 83885 31 100.0 34 ............................... TGAATGGTAACGGCACCGGCCAAAACCTGCTGGG 83820 31 100.0 35 ............................... ATCAACCGGGACGTTTATCCTAACTTGGCGGACAT 83754 31 100.0 35 ............................... AGGAGTCCCTGAAGGCCACCGCACGGCCGACCGCG 83688 31 100.0 34 ............................... CTTCGCCCCGCGCTATCGTCAGTGATGCCCAGAG 83623 31 100.0 34 ............................... AACGGGGCGTCCACCAGAGAAAACAGCTGGCTAC 83558 31 100.0 36 ............................... GCGGTGCTGTACCACTCGCCGAGCCGATCGGCGGCC 83491 31 100.0 36 ............................... TCGGCGTATTCGACGACCAAGCCCGTCGGGCCCAGG 83424 31 100.0 37 ............................... GTACTGACCACGACCGCCACGGGCACTGCGGCGACGG 83356 31 100.0 36 ............................... TTCTGCTTGCCTCTCGCGGGGTGAAGGTCGGCGGGG 83289 31 100.0 36 ............................... AGTTCACGGCGCGCGGCGCGCTGGAATCGTATGACG 83222 31 100.0 34 ............................... TTCGTTGTATGGTCGCGGGAACCTTTCACCCGCG 83157 31 100.0 34 ............................... ACGTCCCAGCGGTGGGACAGGCCGTGTTTGCCCA 83092 31 100.0 35 ............................... AGGAGGTTCGCGCGGCTATTGTAATCGCCCATCGC 83026 31 100.0 35 ............................... CGCGCCCACAATGCCGGGTTCGATTTCCACGTGTG 82960 31 100.0 36 ............................... AAGTGTAATCATTTCGATGGCCTATAGGCGCGGACC 82893 31 100.0 37 ............................... ACGTCGAACTGGCTAAGCGTATTCCGGTCGGCGTCGG 82825 31 100.0 35 ............................... TTTCGCAGTAGGTGGATGAACGAACCCGTCTGCAA 82759 31 100.0 35 ............................... GCGCATTCGACTACGCAGTCGGCACCAAGTTGTTC 82693 31 100.0 35 ............................... GGCGTATCACTCCCGACGGTTGACGCCTGGCAGAG 82627 31 100.0 36 ............................... CCGTTCGTGCCTGCGCCCGGCGGCGGCGAGTTCAGT 82560 31 100.0 34 ............................... AGCGAAGCTGCGTGCAGTCCGCGGTGACGGACGG 82495 31 100.0 33 ............................... GTGTCTCCGATCAAAATGGCACGCGGTGCGTGC 82431 31 100.0 34 ............................... AAGCTGGAACGCGAACAAGTCACCAGCGATCAGC 82366 31 100.0 35 ............................... CGGTCCAGCGTCTCGACGTAGCCTTCGGGCTTGTC 82300 31 100.0 35 ............................... GTTCAACTTTGTGAAGTGGCAGTAACGGTCGGGGC 82234 31 100.0 35 ............................... GCGTTGCCGGGCATGCGCAGCGCGGACTTGTGGGA 82168 31 100.0 34 ............................... ATGTCGGCGTCTCGTTAGTGGGTGTGGGCCTACT 82103 31 100.0 36 ............................... TCACACCGGTGTGGGATTGACGTGTCGGCTATGGTC 82036 31 100.0 33 ............................... AGCAAAGAAGACGCCAGGGCGCTGGCCGCAGAA 81972 31 100.0 34 ............................... ACCACAGGAGAGCCGCGCACGGTGCGTACCGACG 81907 31 100.0 34 ............................... CCGCACCCAGTCCAGTGTCAGCGGTGCGAGCACT 81842 31 100.0 35 ............................... CGCACCCGCGAGCCGGTCGGCCAGGTTGCGACGTA 81776 31 100.0 35 ............................... AACCACGGTCTGATCATGACAGGCCACCTGACCGA 81710 31 100.0 36 ............................... GCCTCCGTCAATCCGCGACAGCACCTCGTTTCGGGC 81643 31 100.0 35 ............................... CGGTCACCAGCAGCGACGCAGCGCGCGCATCGCAG 81577 31 100.0 35 ............................... CTACCGTTACAAACCCGACATGACCCCCGGCGAGA 81511 31 100.0 36 ............................... AGGCCGGGAGACGGTGAAAACGTTGCTCGCCCGTGG 81444 31 100.0 35 ............................... AACAATGGCGGTCCGTCAGGTTGGCTGCATGCAGC 81378 31 100.0 33 ............................... CTGCAGCGTGTGCGACGCGCCGGCGCCGAGCGC 81314 31 96.8 34 ..............................A GGGTTCGTGCTACCCGGCGTAGCGATCAACTGCC 81249 31 100.0 34 ............................... ACGCGCGCCCACCGCGACATGCGCTCGCAGGTGG 81184 31 100.0 36 ............................... TTGACCTCCGTCGCTATCTTCGTAGCGGCCATGGGC 81117 31 100.0 33 ............................... TCAGATTAAGCGCAGGATGCGCGAAACAAAGGT 81053 31 100.0 35 ............................... ATTGAAAACGAGCATGTCACCAAATCCCCAGCGTC 80987 31 100.0 35 ............................... GGCTTCGCGCCGCTGGTGCCGACCGTTTCGCGCCT 80921 31 100.0 34 ............................... CACGAGGACCCAAGGAGTAGCGCCTACTGCCACC 80856 31 100.0 33 ............................... AGCGCCGGGAAAGTGGTTTTGACGACTGGGGAT 80792 31 100.0 36 ............................... ACGGAGGCGCTGCTAGCAAGCATGCGCATGCCGCTG 80725 31 100.0 34 ............................... TCAGCCTGCGTTGCTTCCCGCAAGTTAGAGACCT 80660 31 100.0 35 ............................... TTTGGCGTCAGGTTGAGCACGAACTTGTCTGGGTC 80594 31 100.0 34 ............................... TGGTGCGACTCTATCAGCTGCCCCACTCATCAGG 80529 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 80463 31 87.1 0 ......CG.......C.........C..... | G [80436] ========== ====== ====== ====== =============================== ===================================== ================== 74 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //