Array 1 421353-421655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHNW010000001.1 Streptococcus pyogenes strain GAS12235, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 421353 36 94.4 30 ....AC.............................. TATCACTAACTCCCTATTGCGTGGGGAACT 421419 36 100.0 30 .................................... TGTTTCTTGCAATCGCAATATTTGGGATGA 421485 36 100.0 30 .................................... TTAGAGGCCTATTTCACAGACAAAGACATC 421551 36 100.0 30 .................................... GACTCATCCCAACTACCGTAAGCCCTAAAG 421617 36 94.4 0 ..................C.............C... | T,TT [421646,421650] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.8 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : GACATATCCATGTCCTCCTTTTATTATTTACAGGTTAAGTATACCACTTTAAATTAAAAAAACTTAAAATTAATAAAATTAATTTGTTGCCAATATTGTACTAAAATTTCTTTTTATTTAATATTCGTTAATAAGAAGTGGTTTTATTTGTAATAAAGTAGATGTTATTAAATTTTAAATAAGTTTTAAATCTAACTATATTATTTCCTGTAAAATACGAATAATAAGATAAGGAGGTGCTTTATGCTAACATACGACGAATTTAAGCAAGCAATTGATGACGGCTATATCACAACAGACGCAGTAATGATCGTGCGCAAGAACGGACAAATTTTTGATTATGTCTTGCCAGGAGAGGAAGTCAGGCCATGGGAGATTGTGATCGAGGAGAGGGTGGCGGAGGTGATGGTGGAATTAGACAAATAAAAAAAGACCTTGTCCAAAAGGTCGTGGTATAGTCGGGGACAGGTTGTCCAATCTATTGATATAAAGCCTTTTTA # Right flank : CATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCACTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAACAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGACTTACGTTTAAGTGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTAGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTCGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGCCTCATTCAAGAGACTCTGCTAGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 142768-142204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHNW010000004.1 Streptococcus pyogenes strain GAS12235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 142767 33 100.0 33 ................................. AGCTAAACCTATCCTAAAAATCAAAGGCACAGG 142701 33 100.0 32 ................................. ATGACTATTATGGGGATATCTGCCACGATATA 142636 33 100.0 33 ................................. CCAATAATTCTAAAGTCGCTATCTCTATCTACG 142570 33 100.0 34 ................................. AAAACAAATCGTTATCAATTTGCGTCTTTCCAGC 142503 33 97.0 33 ................................G ATTCCCCCACGAAGCAAACAAGAATTCACAGTC 142437 33 100.0 36 ................................. CGTAAAATATTAATCAGTGTTGATTTACCAGTAACC 142368 33 93.9 33 .......TT........................ AATTTGGCGAGGAGAGCGTGAGGCGAATCTAGT 142302 33 100.0 33 ................................. TTAGCACTGGTTATATTAAGTGCCGAGGAAAAA 142236 33 97.0 0 ...............................G. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 98.7 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAATA # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGAACTATGGACAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : TGAACCCGACCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGAGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACCTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCTTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //