Array 1 48427-48219 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZR01000008.1 Aliivibrio finisterrensis strain A4 NODE_8_length_146679_cov_121.583, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48426 28 100.0 32 ............................ AAAAGAAAGTAAAACCACACCATAGGGTTTTT 48366 28 100.0 32 ............................ AGAACAAACCTCGTCAAGTTGACACTCGATAC 48306 28 100.0 32 ............................ TAACATCCCGTAAGCCAACATGGCTCTAGAGT 48246 28 78.6 0 ....................AAA.AG.G | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAACTTGGTTAAAACGTTTTGCTGACCATACACATGTAACCTCAATTAAGGCAGTGCCATCTTCAGTTACACAATATGCTTGTTTTAGTCGAAAACAGTTCACAACTAATCTTTGTCGGTTAGCAAGACGAAGAGCTAAACGTCATGAAGAAACGTATGAGCAAGCATTGTACTATTATGAAAGTTTTGCAGATAAGGAAACAAAATTACCTTACATCAATGTCAAAAGTGTAACGAAAAATGAACAATTTAAGCTATTTATTGACTGTAAGTTAGGTAAAGAAGAGAAGGGTGCTAATTTCACTTGTTATGGTTTAAGCGCAAATGAAAAGGGCAAGCAAGCTACTGTTCCTTGGTTTTAACCCAAAATAACCTAAAAATTGCTCTTTAAAAACGAGTCAATAAAATCAGTAAGTTACAACAAGTGTTAAGAATTAGGTAAAAATGGGTATTTTTGCTTATCTACTTGTTGTAACTTATTTTTCTGCTGATATTCTATT # Right flank : TTAAGAAAAAATTCGATAGCTATACCTCATATATTTTTAATATTTGCGGTATTACTGTGTTGCTAGAAAATCGATCTTGAATGGTTCTTTGGGCTGCGTGTTGAATTTCAACTTTATTAATAGGTGATAACTCAAGCCAGTGAGAGAGCGTTTTAGATAAGTCTTCTGGCTTGACGACCCATCCATTCATTTCTGACTGTATGAGTTTACTGATATTACCCACAGGGGTTGATATTACTGGTATTCCTCTTCCCATCGCCTCTAATGCCGTCATGGGGAGCCCCTCGTAGCGAGAGCAGATAATCAGTAAGCCAATATCATTCCAAATGGTGTCCATTGAATCTTGATGTCCATGAAAAATGACGTTGTTTGGAAGGTGTTTAATCAGCTCTTGCTCCATCGGGCCTGAACCATAAGTATGAAAAGGGTAATCAGGGTATTGCTTTGCTAAATCGATGAATCGATCAGGGGCTTTTTCATGGCTTAAACGGCCTACAAAA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 59113-58065 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZR01000008.1 Aliivibrio finisterrensis strain A4 NODE_8_length_146679_cov_121.583, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 59112 28 100.0 32 ............................ TGTAAATCAAGTTCTTTATTTTGACGGCATAC 59052 28 100.0 32 ............................ TCTAATAAGTTACGCGGATTTTTATGCTTGGC 58992 28 100.0 32 ............................ AGTTTTAAACAAATAATTAGGAAAGGATCATG 58932 28 100.0 32 ............................ GCGCCGTGTGCAGGTCATAGTTGGAATGCTTG 58872 28 100.0 32 ............................ TGACACTGGTGTTTGTGAGGCGCCTCCTGAAC 58812 28 100.0 32 ............................ AACAGGCCAAGAATTAGAACCACAGCAAATTT 58752 28 100.0 32 ............................ ACCACGGGCGCAAGCAATTGCATTAGAACGAA 58692 28 100.0 32 ............................ AAGATGAAATCATTGGCAACCGAAACTGGCAT 58632 28 100.0 32 ............................ AGTATTAGGATTGACAATGCTAGGAGACTCAC 58572 28 100.0 32 ............................ CAAGAAATATTGGGAGGTATAGCCGACAAATA 58512 28 100.0 32 ............................ AGCAACGTTGTAGCGACCGAGTAAGATACTTT 58452 28 100.0 32 ............................ AAAAGGAACGTTACCCACAACCGCATCAAATG 58392 28 100.0 32 ............................ TGCCCACCCACCGATCATTACACCGTTCAAAT 58332 28 100.0 32 ............................ ATCTCACCTTTATCATTAATAAAGAGATTAGC 58272 28 100.0 32 ............................ GATGGAAACAGGGTGAATCAGACTTTTTTTTG 58212 28 100.0 32 ............................ TTTGGTATGGAGTAAAAATTGGAGTTACATCA 58152 28 96.4 32 .........................G.. TGTATTAAAAATAAATAATGTGAATGCATCGA 58092 28 67.9 0 ...T.......T.....T..AA..ATTG | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCACCATAAAATGCAGTTATATTTTTGGTGATTAATGCTTTTAATTAGATTGATTAAGCAGACTTCAGAACCACGGATCCAATCATCACCATAATGAACAAACAGTAAGGTTATTTTTGTTGTATTTTCCATAACACACCTTCCTAGAATTCTCTCTGATATAAGAGATAGAGCAAGGGCAGTGCCAGATTGTAATTTTTGTTATTTTATTGATTTTTAAAGTGAATTTTCATGTGTAAATCGGTTTTCTCAAATTGAGAATGTGGTTTTTCAAATTGGGAATCAGAGAGATAAAAAGTATTGTCTATTACTTGAAGTTATCAATAATTACTGTATTTATTTTAAAGTGAATGATTGTAGGGCTAAAAATACCAAAAAAAATAACGTTAATAACGGAGTAATAAAATCAATGAGTTAAAGCTTGATTGAAAAAATAGGTTAAAAAGTTACATTTCAACTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTACT # Right flank : ATTAAAATAACTAGAGAACCATTATAAAAATATTGATCAAGATATTATTTTATTTATTAAATAGTATTATAGTAACTATTTGTTTAATATTAACTTTATTGATAAGGCTGTTAATAGTGGAGCAACTCTCTCGTTTATCAATTATTCATCGATTATTAAGCCAATCCAAATACCCAGTACCGAAAAGTAAACTTCTAGAAGCGCTAGAGTGCTCAGAATCCACATTTAAGCGGATACTTCGTAAAATCAATGACGAATTTGATGCCTCAATCTCATACGATAGAGAACTAAAAGGATATGCATACGATTCAGATAGTCCCCAATTACCATTATCATATCTGAGTTTTACTGATAAAGAATGGTTTGCTTTATTAACCGCAGAAAAGCTGTTTACTGATCTACATACAGGATCATTAAATAAAGAGCTAGAAGGGATCAAACACGTTCTACAAAAGACAAAAAATCGAGCAACAGATTTTGGCATCGCCAATAAAATAGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //