Array 1 110282-108115 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEB01000005.1 Salmonella enterica subsp. enterica serovar Uganda strain 2013K-0047 NODE_5_length_337351_cov_4.39521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110281 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 110220 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 110159 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 110098 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 110037 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 109976 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 109915 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 109854 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 109792 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 109731 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 109670 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 109609 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 109548 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 109487 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 109426 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 109365 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 109304 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 109243 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 109181 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 109120 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 109059 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 108998 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 108937 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 108876 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 108815 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 108754 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 108693 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 108632 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 108571 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 108510 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 108449 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 108388 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 108327 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 108266 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 108205 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 108144 29 93.1 0 .............C.A............. | A [108117] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120780-120508 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEB01000005.1 Salmonella enterica subsp. enterica serovar Uganda strain 2013K-0047 NODE_5_length_337351_cov_4.39521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120779 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 120718 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 120657 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 120596 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 120535 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //