Array 1 875426-869872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033190.1 Xanthomonas oryzae pv. oryzae strain PXO404 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 875425 31 100.0 35 ............................... TGAAGGTCTGACCCCTGTGGGTTGATCCCTGATCC 875359 31 100.0 34 ............................... TTTCATCCGCTGCTTGTACAGCGCTACAACAGCA 875294 31 100.0 34 ............................... AGCCGCTGCCTGAGTGGCAGGGCTCTGTGCCAGG 875229 31 100.0 35 ............................... TTCAACAATTTTGTGAACTCGTTCAGCAAGTACCT 875163 31 100.0 37 ............................... AGTGGCAGAGTATATGCAGACATCCCGCCAGATTCGG 875095 31 100.0 37 ............................... CAGGCATCGGTCGGTCGCTGGAATGACAGTGGTGCCC 875027 31 100.0 35 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 874961 31 100.0 34 ............................... ATCTACAAGGTCCGGAAGGAAAAGAAGAGGATTA 874896 31 100.0 35 ............................... TTGGATGGTCAGCCACCAGCTGTCCTGCGGGACCC 874830 31 100.0 34 ............................... ATGATCAGTCTTCGTCTTAAGCCCAAACGGGACA 874765 31 100.0 35 ............................... ATCGTGTGCGCAATGACATGCGTGGTGTCAGTCTT 874699 31 100.0 34 ............................... GCAGATGCTGGACCTGCATGAGCAAGGCAAGCTG 874634 31 100.0 35 ............................... TTCGTCGTTGTGCTGCTAAAGGTCAGCTGCACCCC 874568 31 100.0 35 ............................... TTAACAATGTACCTGTCATCGCCATCACCGTGGAC 874502 31 100.0 36 ............................... CGCAGGAGGCACTGCCATTGCAACGGGGACTGGCTC 874435 31 100.0 35 ............................... CAGTGTACAGCTGAAGCTTTAGGGTCGTGTGCGTC 874369 31 100.0 35 ............................... TAGACAACCATCCCCGCCTCTGGCCTAGCCATGCA 874303 31 100.0 34 ............................... CGCCGGCACATGGGCGATGGTGAGCCATGAGGTG 874238 31 100.0 33 ............................... TCAAAGGGGATGCCACTCAAAGACCAGCAGGCC 874174 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 874109 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 874043 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 873977 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 873912 31 100.0 35 ............................... TTCTCTACACGCGCCTCGACCTTGTCGTAGTCCTG 873846 31 100.0 35 ............................... GGGGTCGTCAGTGCACCAGCAGAGCCAGCAGCATC 873780 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 873712 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 873647 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 873582 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 873517 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 873452 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 873388 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 873322 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 873257 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 873190 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 873125 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 873057 31 96.8 35 ...................T........... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 872991 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 872925 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 872861 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 872796 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 872729 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 872663 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 872597 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 872529 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 872463 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 872398 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 872333 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 872267 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 872201 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 872136 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 872070 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 872004 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 871939 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 871873 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 871807 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 871740 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 871675 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 871609 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 871542 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 871475 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 871411 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 871346 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 871280 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 871213 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 871147 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 871080 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 871014 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 870950 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 870885 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 870820 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 870755 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 870689 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 870623 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 870558 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 870493 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 870427 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 870361 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 870297 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 870230 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 870165 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 870099 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 870034 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 869967 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 869902 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 85 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //