Array 1 4460-6211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBW010000002.1 Streptococcus thermophilus strain ST4 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4460 36 100.0 30 .................................... TGTCGTTCTATACTATCAAAGCGGTCTGAA 4526 36 100.0 30 .................................... CATAGATGGTAGAGAATTTGCATATGCCAC 4592 36 100.0 30 .................................... TATACCAGAAGATGGAAGAACAATCATAGA 4658 36 100.0 30 .................................... TTGTGTCGGTTACTATCATTTTGCCCGTTT 4724 36 100.0 30 .................................... TTCGGTATGGGCTAAACATACCAGTACCAC 4790 36 100.0 30 .................................... CCAAAGAATGGACCATCTCAATGAAAACAT 4856 36 100.0 30 .................................... TCAACAAATGTCATTGCTTTCTACTAATAT 4922 36 100.0 30 .................................... ACCTCCCGACAGACCACAGTTCGGATATCA 4988 36 100.0 30 .................................... CCAAACAATTACTGTTAGACATGCTGATGA 5054 36 100.0 30 .................................... TGCCGTCGATATTCTGCTCGATAGTTCGCA 5120 36 100.0 30 .................................... GTCACAATCTGGCGGAGCTGGTGGACATGT 5186 36 100.0 30 .................................... TATTTCTCTTTTAACAACAGATGTTTTTTT 5252 36 100.0 30 .................................... CATAGTTTCCCCGTATATAAAGTAGTTTCT 5318 36 100.0 30 .................................... AGAGGTAGCATTAGAATCTAGCCGTCTGGG 5384 36 100.0 30 .................................... TTGCCTGGCATCAAATTCACTGATGCCAAC 5450 36 100.0 30 .................................... CATAGTTTCCCCGTATATAAAGTAGTTTCT 5516 36 100.0 30 .................................... TTTAATGTGGCAAGGTGCAGAAATCTATAT 5582 36 100.0 30 .................................... AAAAGGTGACCAAGGTATACCTGGTCCTAA 5648 36 100.0 30 .................................... AAACAAAGCACAAGCCTTGGTAAGTAGCGA 5714 36 100.0 30 .................................... AAATGCACAGATAGCGCCTTTGAATATTAA 5780 36 100.0 30 .................................... TGTGTTTCTCTGAACGCCATTGACAGTCAG 5846 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 5912 36 100.0 30 .................................... CCAAAGAATGGACCATCTTAATGAGAATAT 5978 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 6044 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 6110 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 6176 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 64826-66643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBW010000006.1 Streptococcus thermophilus strain ST4 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 64826 36 100.0 30 .................................... AAGGCAGTCGGTGAAGCTGCACCTGGGCTT 64892 36 100.0 30 .................................... CAACGATTGACATTTATATACCTCCTTAAT 64958 36 100.0 30 .................................... ATTTTGACGCTCAACACACTCAAAAAGTTA 65024 36 100.0 30 .................................... AATCAGCGTAGTCCTCTTTGTCTCTAAACG 65090 36 100.0 29 .................................... CAATGTCTTAAGTCCTGACATAGCGTCTG 65155 36 100.0 30 .................................... TCTTTCTAAAGTCTAAGCACTTCCACTCAC 65221 36 100.0 30 .................................... CTCCTTCTATAATTGTTCTTCCGTTCTCTG 65287 36 100.0 30 .................................... TTTTGATGACCGCACAAAAACTGTAGTTGA 65353 36 100.0 30 .................................... GTCTAACCTATACCGTCAAAGCAAGCGATA 65419 36 100.0 31 .................................... GATGGTATTGCTGGTAAGGATGGTGTTGGGG 65486 36 100.0 30 .................................... CGCACTCCTAACTATTCTTGTGTCAGTTTT 65552 36 100.0 30 .................................... CTGGTGTGCGTGTGCTTGGTTTTGGTAACT 65618 36 100.0 30 .................................... GTAATTATTAAATTAAAGGAGGAAACAACA 65684 36 100.0 30 .................................... ATTTACTTGGACATTATATTGTTTATCTGC 65750 36 100.0 30 .................................... CAGTATTGATTGAGTCCCAAACGCTTGACC 65816 36 100.0 30 .................................... AACGGAGAAGGAAACAGAGTTTATGTTTTG 65882 36 100.0 30 .................................... CAGTGTTGGATAAGTCGATTTTATCAACTG 65948 36 100.0 30 .................................... TTTCGCCTCTTCCGCAGTAATCGAAAACGT 66014 36 100.0 30 .................................... GCATCCCTTGTTTCAATTTCTCCAATTTCA 66080 36 100.0 30 .................................... ATAAATAAAAGGACTTGCTTCCAATCCTTT 66146 36 100.0 30 .................................... TCAGCCACCGATTTATCTTTAGATGAACCT 66212 36 100.0 30 .................................... AGATCTGCTGTAATCATGTGATTATCTCCT 66278 36 100.0 30 .................................... ATCATACATGATAGTTTGTCAACACTTTTG 66344 36 100.0 29 .................................... AATTCTGCGACGTCGCACAATTTAGTGTA 66409 36 100.0 31 .................................... ATGCGAAAGAAGTTGCTGTATCTATTGACTA 66476 36 100.0 30 .................................... TACGAATAATTAAACCCGCCCACGAAAACT 66542 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 66608 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 42119-41275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBW010000015.1 Streptococcus thermophilus strain ST4 15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 42118 36 100.0 36 .................................... TTTCGTAACTGTTTAATTCTGTTCACTTATTCCACC 42046 36 100.0 43 .................................... TGACCTGGTGCATATATACCAACCAGTTTGTCTTTAACATTTT 41967 36 100.0 35 .................................... TCTTAAATCAATGTCTTACCTAAACCGTGAATTTT 41896 36 100.0 37 .................................... AACATATTATTTATCTCCATATATTTTTTTCTTTTTG 41823 36 100.0 34 .................................... GCGTTACCGTAGACCTCTGCGTTACCACTTACCT 41753 36 100.0 37 .................................... CTCCATTAAAAAAATCAGTAAAAATGCCACATTTCCA 41680 36 100.0 39 .................................... AAGTCAAAGTCTTCTATATATGTTGAGTTGGTGACCATT 41605 36 100.0 41 .................................... TGTTCCAATTTAGTAGCATTAATGAATCTGTACTTATCTAA 41528 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 41456 36 97.2 38 .......G............................ TCTTTCGACTTAGAATCGTATTCAAATTTCATGTTTTT 41382 36 100.0 36 .................................... TTAACGAAGTTGTCATCAATCATTACTCCTTGCCTG 41310 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== =========================================== ================== 12 36 98.4 38 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACAATATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGGTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCACGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGCGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //