Array 1 1588-2884 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000147.1 Cylindrospermopsis raciborskii C03 NODE_254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1588 36 100.0 39 .................................... AAATTAAAACAATTCATGTTAGAATAACAGTATAGTTTC 1663 36 100.0 32 .................................... GAAACTGCTCAAGCAGCTCTAGAGCTTCTTGA 1731 36 100.0 36 .................................... ATTAACTAATGTTGTTGGATCTGCTGTCCCACTCCC 1803 36 100.0 41 .................................... TACTCCAAGACTTGAAAACACTTGATGCCTATGATCAATAA 1880 36 100.0 37 .................................... AATATCCTTTTGGAGATCCCAAATTTGTAACATTTGA 1953 36 100.0 40 .................................... GAACTCAGTAATTTTTTTTCTTGTTTTATAAGCATACTCA 2029 36 100.0 39 .................................... AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 2104 36 100.0 40 .................................... GCTAGATTGTCGGTAGACAATCTAAGTAACGAATTATCTC 2180 36 100.0 38 .................................... GTCCCGCCAGTCGCGGAACCTTTTCTTTTTGCCTTTGA 2254 36 100.0 41 .................................... TCCCCTTTCATTAAACTCTTCAAACTATCCCTTTTTGTCGG 2331 36 100.0 40 .................................... CTTTTATAGTCTCCTACTTGTTGATTGAGTATTCCTCTAC 2407 36 100.0 35 .................................... AGGCAAGCGAACTCTCCCTGCAAAAACCTCTGCAT 2478 36 100.0 40 .................................... TTTATAGAATTTATAACAGCCTTGGTGAAACTACCTGCTC 2554 36 100.0 35 .................................... CTTCAACAAGCCCATTTAGAAGATAATTTCTTATA 2625 36 100.0 36 .................................... TGATCTTTAAATCAGAGATTTGCTCAAATAAATCAA 2697 36 100.0 41 .................................... TTAAAATTGCTTATTTAACAAGGTTAAGACTTAGCGATGCT 2774 36 97.2 39 ..G................................. AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 2849 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 99.8 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATAAAATATACTTTTAAAGTTTTGCACCCGGTGACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAAATTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAGGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGAGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : CACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTTATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3803-335 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000167.1 Cylindrospermopsis raciborskii C03 NODE_301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3802 36 100.0 35 .................................... TTTCTGGAGTCCACGGAAACTTATTTCCGTGAAAA 3731 36 100.0 35 .................................... CAACTGGCAAGTAAAGAGAAGAGTTGCCCGTTTAA 3660 36 100.0 38 .................................... GAGGAACTCCATTACCCAGAATCGGAGGGGTGGATAGT 3586 36 100.0 37 .................................... CAATTCAACCAAATCTATGTTGGGGACATTGACAACA 3513 36 100.0 40 .................................... AAAGCTCCCATAAGTTTGACTCACGGGAGCATCAAAATAA 3437 36 100.0 35 .................................... TTCTACTTCGCACTGGTCTAGGAGAATCTGATTCT 3366 36 100.0 39 .................................... CAGCTTAATATAGTCGCATCAATAGATTGCATTAGTATA 3291 36 100.0 39 .................................... CTACAGAAAGAGTGGCCACCGTAGGGGATCCGGTCTACT 3216 36 100.0 35 .................................... TCTGTCGAAGACGTAAACTATATTATTTTCATCAC 3145 36 100.0 39 .................................... AATTCACTTTTTTTGAAGTTTGTTTTGTTAACTCTAAAT 3070 36 100.0 39 .................................... TGGTAGGTATGATAGGAGAGAAAGAATCTATTCTATAAA 2995 36 100.0 36 .................................... TAAGTGGAGTAGCCAGAGGAATAGACATTAATTGGA 2923 36 100.0 35 .................................... TATAGGCTTAAGGACTTTTTGTACAGGTCTATCGC 2852 36 100.0 38 .................................... CACCAGGGAGCGGTTTGATCCTGGTAGGGAGGAAGCCA 2778 36 100.0 35 .................................... CACTCTTAAAAGTGGCGATAAGCACCTAATATCTT 2707 36 100.0 38 .................................... TCGCGGTAGAATTGGTACACGTGAGTAGAACTGAAATT 2633 36 100.0 39 .................................... TCTATCCCAAAAACCACCAAAAATGATAGGGGTTGTGTG 2558 36 100.0 37 .................................... GCAAGAGAATATTTCTAATTCTGTTTCCAGGTATTAG 2485 36 100.0 40 .................................... TGACTCGACTTGACTCGACTTAGTTCGACTTGACTTAGTT 2409 36 100.0 40 .................................... GGCTGTAGTCTTCAACTACAGGAGCTTCTTTAGCCTCTAA 2333 36 100.0 36 .................................... ATTGTCCATCAGATAGAGAATGATGGCTTGTCTTTA 2261 36 100.0 39 .................................... TTTTGCGGTTGACACTCTCTTCCGCTCTTAAGCCCAAAA 2186 36 100.0 38 .................................... CTCTGGTAGATCTTTGGTGTACTGGGAGAGAATCCTGT 2112 36 100.0 36 .................................... TTGTTCATAATCATAATTAACCTTGTTCATAGACAA 2040 36 100.0 39 .................................... GTATTTATCTCCTATCTCGTCAGGATTGAGGATCCTGAT 1965 36 100.0 37 .................................... CCATGAATAATAACCCCACCAACACCACCAACCCCAA 1892 36 100.0 35 .................................... AGTATAACGATGGTTTGAGTCTATGTCTAATCAGT 1821 36 100.0 38 .................................... ATTGCGTATACAAAAGGACTTAAAGCAAAGCCGGAGCA 1747 36 100.0 35 .................................... GTGTCAGTGTCATTGGTTAATTCGTATTGATACAA 1676 36 100.0 40 .................................... TCTCCAAAATGTGGATATGTATCTGGTCTTTCCTCCTCTT 1600 36 100.0 35 .................................... TTCAACTGAGTCAGGGTTGACGGATATCCTAAACC 1529 36 100.0 37 .................................... GGCAAATTTACCTGCCTCAATCCTAAATCTTTCATCC 1456 36 100.0 36 .................................... TTCTTTTTTAGAAAATATTGACAAAGAGGAAGTTTA 1384 36 100.0 38 .................................... TTTGGTTTCTTCAACCTCGCCTCCTCTAACGTGAACCA 1310 36 100.0 36 .................................... ACATTATGGGTTCCACTCCATTTCTAGAAGGAATGA 1238 36 100.0 34 .................................... TCAAGTCGAGTGTAGGCGTGGGCATCGCGGTTAA 1168 36 100.0 39 .................................... ATGATATATTAATAATGGGGAGGCATGCCATAAATTTCC 1093 36 100.0 38 .................................... TAAGGTAAATAAAAAAGAATGGGCTGAGTACAGGCAGC 1019 36 100.0 38 .................................... CTTAATTAAGCCTATGCTCCCAACTTGTATTAAATCTT 945 36 100.0 37 .................................... GAGTCAGTAGCGACGTTTACGTCGTTCTCCCTTAACC 872 36 100.0 35 .................................... GAATCACAGGGGATTCCTGTGGTAGAATCACAGAA 801 36 100.0 35 .................................... TGGATACCTTCAGTAATTTAAACTATAAAATAAAA 730 36 100.0 35 .................................... TTCACGGCACAAGGAAGAATCCTTCTCATTGAAGG 659 36 100.0 33 .................................... CTATTATCATTCAAATTTAACTAGAGTTCCCCC 590 36 100.0 35 .................................... TTGTTTTCTATAATACTACCTACTCTGACCAACTT 519 36 100.0 36 .................................... TTGAACTTGATTGCTTCCTTTTCAAAAGGAGCAAAA 447 36 100.0 38 .................................... TTCCTCTTCCTCTGCCTGACGGTAGAGGAGGAGGGCTG 373 36 83.3 0 .......................CT..CGG.....A | C,T,A [337,340,346] ========== ====== ====== ====== ==================================== ======================================== ================== 48 36 99.7 37 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : AAAGCCATTATTGCAAGGATTTTGGCGTATACTTTTTAACTAAATGTAGTTATGTAATTTGGTATTATGTTTTATGATATTAAATCATAGCTATACATTTTTATCCAGACAATGAAATATACCTTTAAAGTTTTGCACCCGGTAACTTACAGTAGGCTATTTACAATAAAAATAAAATATACATAATTTTTAAGGAATTATTTTGCTGTAAATGTGTTATAATATGGGGGAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGGAATAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGAGCAAGGGCTTAAAATGGAGGG # Right flank : AGTGGTCAAACAGCTTATTTAATAAGGGATAGAGCCTGAAAGCCACGCTGGAAAAAGAGGCGTTTATGAGGTTTGAGACCGATTAAGGTCAGAGCTAAATCAGCCCATAATTCCATGCCGTAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACTTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCAATCACAATTAATAAAACTAAGGCTAAAAAACGAGTTTCATTTACTTTAGTATCCTCTAGATTATAACCACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 63984-64172 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000061.1 Cylindrospermopsis raciborskii C03 NODE_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 63984 36 100.0 37 .................................... AATTGGTTGACAACCAAAAAAGGTGTGTTATGGTAGT 64057 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 64137 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 41 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCCCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTCTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : CGTAATAAGGTTGTTTCCAACAACTTTATTACTTAAGCTTCTCCGGTCTGAAGACACGGAGATTTCTGAAGAGTCCATAAACGAACTTTTTTTATTTCATCTACCTGATAGACAAATTCTGCATAAAATTGTCTATTTCTAGGTAAAATGCGTACTTGATTGATTTGAAGTCAAGGTTAGATGGCATTGGTAGACAAAAAGAATCTAGGTTCTTGCGTCTGTTTTATGGACAATTAATAGAAAAGTGCCAGTGTAATAAACTGCGTAGACGAAAATTGTTGAGGTTACGAAGTCCATATCCCAGTCGTTTAATCAACTTGAGTTTATTATTAATACCTTTAACCCAACTAAATTCCCACCTGCAACGAAGTGAGGTGGGAACTATCGGACTATATAAATGCTTAATTATTCGATAGACGTGCTTTTACATCCGTTGCAAAGTCTTCATATCTTCTCAAAGGAGTGACTTGTACATGGACATTTTGACCCATTTTTTTCAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 56235-52276 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000023.1 Cylindrospermopsis raciborskii C03 NODE_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 56234 36 100.0 34 .................................... CGAACTAAAAGAAAAGAATAAGCTTGTAAAACAA 56164 36 100.0 36 .................................... TAGAAAAAGAAATCAAAGACCTATCGTTTGGATTTT 56092 36 100.0 38 .................................... ACTCAGCGGACACAAATTTGACTTTAGCTACCAATGGA 56018 36 100.0 39 .................................... GCAATTTCTTGGCTCGCCCAAGAGCTGGGAGATCAGTTG 55943 36 100.0 36 .................................... ACCCCACACCAACCCCAACACCATGACCACCAACTC 55871 36 100.0 36 .................................... TTCACTCCAAACTTTTGGCAACGTAGACCTAATCCC 55799 36 100.0 35 .................................... AATAAACAACAAAAAAACCCCATCTAAGCAAGGGC 55728 36 100.0 46 .................................... ACATGGAAACAAAAAAAGGGATCTTGGAGTTAAAACAACTCCAGAA 55646 36 100.0 44 .................................... TCGAAAACCCTTACTGGGTCGAGAGATACGTATTTGAGTCTTTA 55566 36 100.0 37 .................................... ACTAAAGCTTATAATAAAGGAGATAGAGTATTAAAAG 55493 36 100.0 38 .................................... TAGGAGAAGAGTTAACAACAAAAAGACAATATCTAACA 55419 36 100.0 37 .................................... GAACACCCAACCCCACACCACCCCCACCACAATGAAC 55346 36 100.0 40 .................................... TGGGCATGCCTCCCCATTATTAATATATCATGTCAAGTTT 55270 36 100.0 36 .................................... TTTTTTAGCTGACAATAAGCGATAAACAATACAAGT 55198 36 100.0 36 .................................... TTTAGCCGCTAGTTATCCAACTAGCGGTTTTTTCTT 55126 36 100.0 36 .................................... AAAATCCGGATGGGTGGGATAGGATTTAAGAAAATG 55054 36 100.0 33 .................................... CAAGAAATAATAGTCAACCAATGGTGGTGCAAC 54985 36 100.0 34 .................................... GCTCATATGGAAAGGGATTTAATATCTAATTACT 54915 36 100.0 37 .................................... AGCCTATCAAAATAACTTATCTCCAAAATAAGAAAAA 54842 36 100.0 38 .................................... ATATGGCTCTAAGCATTCGAGCCACTCTTTACTTAAGC 54768 36 100.0 41 .................................... TTTCTATAAATATAATATAACCTGATTCTTTAGCAATGTCA 54691 36 97.2 37 ..............................A..... AACCAGGAGATATTCCTATTGGACAACGCAATGATTT 54618 36 100.0 38 .................................... GTTGAGTTAATTTCTGGTTATGAGTTACAAAGAGTACA 54544 36 100.0 37 .................................... ATGGGAAATGGTTGGTCTTCACCAGAATTTATGGGTA 54471 36 100.0 42 .................................... TTTTTCGAGTCTACGAAACCCAAGTTTTAAGAGTTATAGAAC 54393 36 100.0 39 .................................... ATTATTAATATCAGAAATAAATATTGTTTCTACAGATGC 54318 36 100.0 38 .................................... ACTGCGGTCTTGTCACCGTCTGCGTCGCCGTAGTTCAT 54244 36 100.0 40 .................................... TTTTCTACAGGTTTTGGCTTAGCTTCAGGGCGGGCTGTAG 54168 36 100.0 40 .................................... CTGTACAATGCGAGTGCTAAGTGATTTGACGACTCCTCAC 54092 36 100.0 35 .................................... TTAGAGAATCAGAGAAGAAGGGATACACTTTAAGA 54021 36 100.0 39 .................................... ACACCAAATATGCAGCTCCTAGCTGCCCATTGCCCTTTG 53946 36 100.0 36 .................................... GAATGTGACAGTATGTATGAAATCGATAGACGGTAT 53874 36 100.0 38 .................................... GGTAAGCCAGAAAACCACAACTTTAAAGTAACAGACAC 53800 36 100.0 37 .................................... ACACTATACGTAAACCAGTTTGTAAATAATACAATAG 53727 36 100.0 38 .................................... CCCTTAATGGGGTTTTTTTGTACCCCCCGACTGTACGT 53653 36 100.0 35 .................................... AAAAGAAGAGCGATAGCTAACTCCTAGTTAGTTAT 53582 36 100.0 36 .................................... CTAAACTCGTAGTCTGGGGTTCAGACATGGAAGATT 53510 36 100.0 41 .................................... GACAAACATATTTTTTCCTCCTAACTATTATCAATATACCA 53433 36 100.0 40 .................................... AAGCACTTCAAAATAATAATACTTACTGGAAAATATTTTC 53357 36 100.0 39 .................................... TCTGGTTCTGGTGAAGCCTGATTTATCATTACCTTGTTT 53282 36 100.0 40 .................................... TTCTAAACGATGGAATAGTCATTAGACACTAAAAAACCCG 53206 36 100.0 42 .................................... CATCCGTTTTGTTAAGTGTCCATTCTCAATTACGATACTTAA 53128 36 100.0 34 .................................... TTATTGTGATTATCAACATTAGATTAGCGGTAGA 53058 36 100.0 36 .................................... ATCTCAGCACTCAGGAATAGCCGAAACACGCGATTA 52986 36 100.0 42 .................................... GTAGACCGGAAACAACCCCGGGTAGACCGGAAACAACCCGGT 52908 36 100.0 35 .................................... TCACTTAGTTTTCTCATAGTTTAAAACCCTGTAAA 52837 36 100.0 39 .................................... TTGTTGAGTTAAAAAACAGCCCCAAGGAGGGGTAGGAAA 52762 36 100.0 47 .................................... GTCAAGACTCGTGAATACTTTTAGCTTCTGCTATGTTTTTAGCAGAA 52679 36 100.0 37 .................................... GATGCGAAAGACGGCATGAGGTTTATAAAGGCTGTAG 52606 36 100.0 40 .................................... TGACTTTGCTTTAGCTATGGTAGAAAGAGCAATAAGAATT 52530 36 100.0 36 .................................... AGATGGATTACAACAAATACCTGGCAATGATATACA 52458 36 100.0 37 .................................... GTTTCGTCACTACTAATGCTAGGCATTACTCTTTTAA 52385 36 100.0 38 .................................... GATGTACGATAGGATTTACGTACCCACAGGTCACCCTT 52311 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 54 36 99.9 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTAAACTAAGGATATTTTAGCGCAGGAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCTTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : ACCTCCATTTTAAGCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAATTTTCTCTGTTTTTCACCCCTACCACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATTCCCTTCGTTAATCACTGAATTTACTGTCTTTAATATCACTTTAACCATTAATCAATAATCTCAATACTAATCCTTAATTAATCCTTCCATTTATCCTATTATAACTGATTCATGCTCAAATAACTGGTATTCAAAAACAAAAAATTTATTGTATATTTTATTTTTGCTTAGACTAAAGTAAACAAATATCATATAGATTAAAACTTTACCTAACATGAATACTCAGATAATAATAGAATTGGGTAATTGCACTATGGGTACTCCCACTCCCCAAGCTTCTATTTGAGGAATGGTATGTTTAGACAAAGGATAAAATCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 2010-2641 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000290.1 Cylindrospermopsis raciborskii C03 NODE_569, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2010 36 100.0 38 .................................... CAGGAAATTGCGGAAGGCCGCAATAACTCAATTATCGG 2084 36 100.0 35 .................................... ACGTATTCTTGTAGCTCTTGGCTATCAAACCACTC 2155 36 100.0 42 .................................... GTTATATTCGCCCCGGCGAAAACGGCGAACGAGAACGTATTA 2233 36 100.0 38 .................................... GAATGATTTCTTGAGCAACCGCAGGAGGGTCTTGTATT 2307 36 100.0 38 .................................... AGTTCCTCAACTCCATCGTATTCCGTTATGTAGTAACG 2381 36 100.0 35 .................................... TAGAGTTGGGTAGTTGGGTATTTTGGACAATTCTT 2452 36 100.0 44 .................................... ACGGTGTGATAGTTATTATTGTACATGGGCATACTTTTTTACTA 2532 36 100.0 38 .................................... CGGAAACGTTTTTTCTTGCCTTTGATCGTAATCCCCGA 2606 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================================ ================== 9 36 99.7 39 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GTGAATAACTATCTGTTGTCTATATTGGAGGAAGATAATAATAAACAGTCATAAGTTTATCATATATGATTAGTGCTGATTCTCTCTGGGAAGTAGAATTAGTTCCAAAAGTTTTATAGTTAAGATTTTCTCTACAGGTGGCGAATAAATAAATATTACAATATTGATATTATATGTAAATTATTAGTTTTTTGGTGTAAAGTTATTATAGATTAGGAAATTAAGGGATTATATCATTATTAAGATGAGAAAATTAGTCCAGTATTTATGAAAAGTAAAAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : ATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGNNNNNNNNNNAATCATTCATTATTTTATTTGGTATACTATCATCTGGAGTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGACATATAGCGGGGACTTTAAAACCATTGTGAGATATTAAGTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGACTGGGAAAGCCAATGGAGAAACCCAAACCCACAAAGACACAGGTCTTGACCTTCGCAAGAAGGAATAGGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2963-5954 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000290.1 Cylindrospermopsis raciborskii C03 NODE_569, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2963 36 100.0 37 .................................... ATATAGCGGGGACTTTAAAACCATTGTGAGATATTAA 3036 36 100.0 41 .................................... TGGGAAAGCCAATGGAGAAACCCAAACCCACAAAGACACAG 3113 36 100.0 36 .................................... ACTATCTCATATCTTGAATAAATTAGCTTGTTACCA 3185 36 100.0 38 .................................... TAGTTGAGTTAGTTTACTGGTAAAAGTTTATGCGATAC 3259 36 100.0 37 .................................... TAGTTCCTTTATATTATCGAGTTGTTAATCAAATGGA 3332 36 100.0 36 .................................... ATCTAAAACAAGTTGGACTCAAAAGCAAATATCCAA 3404 36 100.0 38 .................................... AATTAATCCTCTTTTAACACAATCGAAGTTATTCACAA 3478 36 100.0 39 .................................... ATAGCATATACCACGATAATAGTAAACCCAACTAGGATG 3553 36 100.0 38 .................................... CTCTAAGGTGTTAGTCATAGATGCTGATTTGAAATCTC 3627 36 100.0 42 .................................... ACTCAAAACTAAATCAACCTCTAGATCTGTTTCAGAAAGATT 3705 36 100.0 35 .................................... TGATTTTAGTAACATTGTTTGTCTGGGCGTTTTAA 3776 36 100.0 39 .................................... ATCTGGTTTTAGCGATCGGTCTACCGGGTTGTTTCCGGT 3851 36 100.0 37 .................................... ATACGGAGCTTTAACCAAAGCCTGAAAATACTGACAA 3924 36 100.0 39 .................................... AGCCAAGTCAAGTTGAGTCAAGTCGAACCAAGTCAAGTC 3999 36 100.0 39 .................................... CCACTTCGATCCCTCCATCGTCTGCCCCTTGGCTCTACT 4074 36 100.0 35 .................................... ATCTAATAGCGTTCATAATTTGTCTCCTTTGTTTA 4145 36 100.0 40 .................................... TGTTCCAAATCTAATAAATACATTATTTTCTCCTTGTAAA 4221 36 100.0 36 .................................... GTTAGGTGAGTTGAGGACTGATGAATCTGCTTTAAT 4293 36 100.0 38 .................................... CACCCAGATTCTAAACTGTTTAGCTATGGTTTTAGAAT 4367 36 100.0 38 .................................... GAATTGAAAATCATTGGCAAGATGATAGTTACTGTCAA 4441 36 100.0 39 .................................... ACACAACTTCAAAGTTTTTCATAAAAGATGTTTGCAATA 4516 36 100.0 36 .................................... TTCCTGTAGCTTTAACCGCGATGCCCACGCCTACAC 4588 36 100.0 38 .................................... GGACTTAAGATAATCACAAGGAGACCAAAAATATGAAG 4662 36 100.0 38 .................................... GAGCTTCCTGGATGCAGTATCCAGGATAGTATCTTCCT 4736 36 100.0 38 .................................... TTGAGATAGCCCTTGCCTGAGCAATATTTCTATCTCTT 4810 36 100.0 36 .................................... AGATCGACTATTTGATTTCCTGGAAAAATCATTTTC 4882 36 100.0 38 .................................... GTAGAAGAATACATAGACCAGGTTGAAGAACGCATAGA 4956 36 100.0 35 .................................... ACTATATAGTCCTCCATTTTGATCCAACTGCTATT 5027 36 100.0 40 .................................... TAGATGCAATTAATTTCTGTAATGCCATGAAGATTATTAC 5103 36 100.0 39 .................................... TAGAAGTGCATCAAGCCTTCGGGTGGGAATTACCCGACC 5178 36 100.0 36 .................................... CTGAGGAGTTTGAGACTCAGAAAGCTTGGTATTAAT 5250 36 100.0 40 .................................... ATGAGTACTACCCATAAATCCTGGTAAATACCATCCATTT 5326 36 100.0 38 .................................... CATCCTGAGAAGAATCCTGAGAAGAAAAAGAAGAAAAT 5400 36 100.0 40 .................................... TCACGAGTTGAATACTCGTTGGTTTCATCAAGTAGTGATG 5476 36 100.0 39 .................................... TTTGCATGTTATCCTGTCCTCTTTCATCTTTGATAATGA 5551 36 100.0 33 .................................... TCAACATTAAAAAAAGGAAACGACATGAGCATA 5620 36 100.0 43 .................................... GTTTGTAAAAAGACAAACCCGTTTAAGACGGTTTACAAAGAAA 5699 36 100.0 36 .................................... AATTTTTTCGTGATCAAAGTGGATCACTAAGTAATC 5771 36 100.0 39 .................................... GTATCTATACTAAAAATAACGATGGCGTTATACTATACC 5846 36 100.0 37 .................................... TCCAAGTATTAGATAACAAGGTTAACGGACAAATTAC 5919 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 41 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : CGCAAGAAGGAATAGGTATTGCGACACGGTGTGATAGTTATTATTGTACATGGGCATACTTTTTTACTAGTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGACCGGAAACGTTTTTTCTTGCCTTTGATCGTAATCCCCGAGTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGNNNNNNNNNNAATCATTCATTATTTTATTTGGTATACTATCATCTGGA # Right flank : CGCATTCAACAAGCAGTCATAATGTTAGGAGGAATGATGGAAGGGCAAGCTCCTGATCCATATAGAGCATCTACTTTTTATAGGCTTAAAACCCTTGATTTACATTTTGTACATAAACAAAGTAAAGATTTTCTGTTCCCAACTATTAATATCTATGATTCTTTAGCTAAAGATTATAACACAAAATCTCAAGAGTATGTCACAAAGTTTGAGGAAAAAGTCTTTGAGTTTATGTCTCTAGAACCTAAACTCCCAGAGCCAAACTATAGTAAAGCACCAAAACTTGTAGAGCTTGAAGAAAGTTTACTTTCAGCTAAAATAGTAAAAACTCCTGGAATGGAAGAAATTATAAAAATTAGTGAGTCTGTTCTCGAAGTAGGAAAAAAAACAGAAGATATTCTAAAAGAAGCTTTAAGAGAAGAAGCTAATCTTAATTTTAAAGAAGAGTTTATTAATAGAATAAAAGAAGACAACAATAATATAAAAAGTTTAAAAGCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 9925-10912 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000083.1 Cylindrospermopsis raciborskii C03 NODE_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 9925 36 100.0 38 .................................... CTGGGATAAAGTTATACCAAAAAAATATTCTAAAAGAT 9999 36 100.0 36 .................................... AGAGATTGGCAGTGGACATGAATCCTTGCCTTTATT 10071 36 100.0 38 .................................... AAAATGATTTACCTCTTCGGTGCACTGGTCTAGGAGAA 10145 36 100.0 39 .................................... ATGGACAGCCTGTAATCTCCTTCTTCCGTCAAGATTTTA 10220 36 100.0 36 .................................... TTGCCTTTATTAAATGTGTCAGGAGCATCCATAGAG 10292 36 100.0 37 .................................... TCAAGGGGAGCTAGCCCCGATAATAAACGTATTGCTT 10365 36 100.0 38 .................................... TGAAAACATCGTTGTGTCATGTCGACACAGGGTCGACA 10439 36 100.0 39 .................................... TTTTTCTGGACAACAGAAAGTGTCTTTCGGAAAGTTTAT 10514 36 100.0 36 .................................... TCATAATAGGATAATGACTCACGGTAGAGTCTTACT 10586 36 100.0 37 .................................... AGTTCGTATGCAGCGTTTATCTGCTGCATCACTTGGG 10659 36 100.0 36 .................................... TAAAAGACCTCCATGCCCAGGGCATGAGGCAGATAG 10731 36 100.0 35 .................................... ATCAACTACTTCCTTGATCTTGTCTAACAATATGA 10802 36 100.0 39 .................................... CTTGACAATAAATATTAGCGGTGTTACCCTAATAATGCC 10877 36 83.3 0 .........C......T........A.....T.C.A | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 98.8 37 GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Left flank : CTATCTATGGGAATAGTTACATCTATCTTTAGATAGATATTTGGGTAAGATAGGGGTTTGGGTAGGTATTTTACGACATTTTATCTAACCTAAAAACTTTTATGCGAGTAATGAAATATCCCAGTCAATGTAGTACCTAATGGGGGGTGAGAATGAAGTGGTCTCAAAAAAATAAAATATACATAAGTTTTAGGGAATTATTTTCCTGTAAATGTGTTATAATAGTGGCACAAATGGGGAAAAATCGGTATAAATATTTCAGTAATAGTAAGGGATAATGATAAAAATAAAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTTGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTAGGGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTTGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : CTAAATAATGAGTGCTTGAGAAAATATCGAACTTATTAGCTGTGCAACATGAAAAAACTACAAAATCTTCTTTTCTCCTTCCTCATCTTCACTTTAGTATTTTTAGGAATTACAGCTTTTTTTATTCCTAACATTGCTTATGCACAAACCCAGAAGTGTTGAATGTTAAGAAAGTTGTGATAAAAATTGCCCAAAATATATTAAAATTTGGGCAACCCATATCAAAATATTAATTTGATAATGATCATAAATTCATTCCCCAAGATTGTCAAGGACATCCTCAGACCGTTACCAAAAAATGATTATCCAGTTTTGAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1174-3042 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000411.1 Cylindrospermopsis raciborskii C03 NODE_955, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1174 36 100.0 37 .................................... CTTAAAAGAAGTGTTAGATAAACACTTCGACTTATAC 1247 36 100.0 38 .................................... ACTTGAAATAGAAGTTGATTGCTTAGTGGTTAAAATGG 1321 36 100.0 37 .................................... GAAAGGTAATCCAATCAAACCCCCTTGTAACAGTCTC 1394 36 100.0 38 .................................... GGTCAAACCCTTGGGGAGGGATGATTTCTTGAGCAATC 1468 36 100.0 37 .................................... TCCTCTGTGAGTTTGATCCATATGATCAAACTTCTTC 1541 36 100.0 38 .................................... TTTTTTTTGTCTATGGTTATGCCATCAACTCCAGCCGA 1615 36 100.0 37 .................................... TTCAATCCTCAGAAGTTATCCTTACTCCCGAGGATTC 1688 36 100.0 36 .................................... TCGAAACATATCCATCAACTATATGGGAACATCATC 1760 36 100.0 39 .................................... CACTTCGATCTGTATGAACAAGATTTTTTTAATTACTTC 1835 36 100.0 36 .................................... TGGGAAACCGAAGACATCCCCAGACACCACCCTGCC 1907 36 100.0 36 .................................... TCATTTAATCTAAGTAATAAATATGAAATCATTGAA 1979 36 100.0 36 .................................... AGGAAAAGTCTTGCTACTATAGGACAAAAATGAGAC 2051 36 100.0 36 .................................... AGGAAAAGTCTTGCTACTATAGGACAAAAATGAGAC 2123 36 100.0 37 .................................... AAAAAAAAGCACTAAAAATGTTCAGGTATTACGATAT 2196 36 100.0 41 .................................... ACCCTTATAAGGTAGCCGGGCGGCTACCTCTTTTCTTTTAA 2273 36 100.0 39 .................................... TATGAATTTAGGGATAACAGCAGGAACGTACGCTAAGAC 2348 36 100.0 40 .................................... TTTATTATAAGGGAGGACTACATAGTTCTCCACTTCGATC 2424 36 100.0 33 .................................... CTGTTACAGAGTGGCACAAGATAAAATCCTCAA 2493 36 100.0 36 .................................... TTTCTTTAAGGAAGACAAGTTTGCCTTTGCAGGAGA 2565 36 100.0 40 .................................... ATTCTGTTAATTCCATATTCTCTTTCTCCCTTTCTGGTTT 2641 36 100.0 42 .................................... TATGGAGGAATATCCAGATCAAAAAATCAAAAACTCAAAACC 2719 36 100.0 35 .................................... CGTAAATCAGGGTTTTATACGGCTTCTTTAACTTC 2790 36 100.0 37 .................................... GTTTTAATAGGTTAACTCAAAGAAAAGACTTTTTTTT 2863 36 100.0 35 .................................... TACAAAAAATGAACAACTCCTTTTAATCCCCTAAG 2934 36 100.0 37 .................................... TTCTACCTAAATGGAGTTACTCCATTTATTTCCTGTT 3007 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 26 36 100.0 37 GTTTCCATTAATTCCACTTCCCAGAGGGAAGCGGGC # Left flank : CCATTATTAGGCGATCGCATTTCTTGGGGTAACACCAGGAGATGCGATCGCTCTTGTGTATAGGGGTTTCGAGTAGTTGTTTTATGTGGGTAAGGAAGTGAGAGTTCTAAGATGGGCGATCGCCTGACAGATAGGATATTCAAAAGTTGTTTTATTCGCTCCATGAGATGCGATTTCCCATAGGGAGTGCTTAAAATCCTATTTGGGAGTAAGTGGTATGTTATTCTCCCTGAGTTTCGATATGCGATCGCCAATGGAGAAAGAGTTTAATTTTCCCAGACATCAAGAAAATGTTCCCATGTACGTGGTTGCTCAGCAGCAGCAGTTTCAATAAGACGTTTTCCTCGTCCCTTTTCCCTCCATTGCTTGGAAACGAGCAGGTCGTAGACATAGAGTCCAAATATTCCATCTTTTCGGCAACGTATATACCCGATTATACAGTTATTTGCCACAGCGACGTCAACAATACAATTGTGTCCAAGGGCTATGGAACTCCGAGT # Right flank : CCCCTCCATTTTAAGCCCTTGCCCTGACTAGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAATCTCTTCGTTAATTACTNNNNNNNNNNTTCCCAGAGGGAAGCGGGCTGTCCATAACGACAGTATCACCACGGCTGGACTTGGTTTCCATTAATTCCACTTCCCAGAGGGAAGCGGGCTAGCTACTCTCTCGGTGGAGTAGCCAAGCTCCACCAGTTTCCATTAATTCCACTTCCCAGAGGGAAGCGGGCCTATGTTATAATTACGAATAGGAATAAGTAACTACGTTTCCATTAATTCCACTTCCCAGAGGGAAGCGGGCTAACGAGTCGAACTCACCCGCCAAATTGGCGGTAGACAGTTTCCATTAATTCCACTTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCCCAGAGGGAAGCGGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 4187-3304 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000411.1 Cylindrospermopsis raciborskii C03 NODE_955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================== ================== 4186 36 100.0 43 .................................... ACGTTATATTGTGAAAAAGCTCCAGCAAAAAAGAGACCGGATC 4107 36 100.0 37 .................................... TTGCCTGTGGGCTGTAGCTAGCATCGGACGCATAACA 4034 36 100.0 39 .................................... TCTATCAACCGTAGTGCGACATTATACATCTTATCATTC 3959 36 100.0 38 .................................... CACCGAAAGAGGTGGCTGTAAGTAGGTACTTCCCTATA 3885 36 100.0 35 .................................... TTATCATTTGCTTAAACGAGTCAAGTCAAACTAAG 3814 36 100.0 43 .................................... CAAATAGACGTTTGCACTAAAATATCCGGGTTAAAAAGGCAAA 3735 36 100.0 40 .................................... TTGATTGTTTTTATTGGGACACGAATGGATTTGAAAAGTT 3659 36 100.0 67 .................................... ATAACTACTCTATTGATTCTATTAATAGATTTAATGGAGAGCTTTTAGATGTTGTTATTCCTTCTAA 3556 36 100.0 38 .................................... TGTCTACCGCCAATTTGGCGGGTGAGTTCGACTCGTTA 3482 36 100.0 35 .................................... GTAGTTACTTATTCCTATTCGTAATTATAACATAG 3411 36 100.0 36 .................................... TGGTGGAGCTTGGCTACTCCACCGAGAGAGTAGCTA 3339 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================================== ================== 12 36 100.0 41 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : CAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATGAAATATACTTTTAAAGTATTGCACCCGGTAACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAATTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGTTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGGACAA # Right flank : CAAGTCCAGCCGTGGTGATACTGTCGTTATGGACAGCCCGCTTCCCTCTGGGAANNNNNNNNNNAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACTAGTCAGGGCAAGGGCTTAAAATGGAGGGGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACAACAGGAAATAAATGGAGTAACTCCATTTAGGTAGAAGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACCTTAGGGGATTAAAAGGAGTTGTTCATTTTTTGTAGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACAAAAAAAAGTCTTTTCTTTGAGTTAACCTATTAAAACGCCCGCTTCCCTCTGGGAAGTG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 2665-2329 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHU01000013.1 Cylindrospermopsis raciborskii C03 NODE_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2664 37 100.0 38 ..................................... TGGTTGCACTAAACCATGAGCTTCTCCTACGTTTTCGT 2589 37 100.0 37 ..................................... TTGTTGGCTCTCTCCCATGAATTTGTTTGAATAGTTT 2515 37 100.0 39 ..................................... CACATCTAGAGGACAAGCTAGGCGTGCTGGAGTCGCAGC 2439 37 100.0 37 ..................................... TTGACAAACTTAAAATAGAGAGATATAGTAAAAACAC 2365 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : GTTTAGAATCATCAAGCTATAACGAACCAATCAAAAAATCTGAACGTTGGATGAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAGAATGGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : CTGATGACATTAGAGAAGGTAAGAAAAAAATATTATGAGAAATAGAAGTGTATCTGACATGCCTCTTAGAGAGGGCGATACAGAAATACAGACGGTAGGCTGTAGGCATACTAATCCTGATATTTGTGCAAAGAATGGTTTACATGGAAAGTGCGCTTTACCAATAAAGATAACATTTGCTTTACTCCGCCAGCGTCATGGAAGAAAAAATACATAAATCTTAAAAACGAAGGATTGAAATGAAAATCATTAGCGTAGCGGCTATTCAAAAAAGAGAATATTGGATAGAAGAAATAAGAAAATTAAGCGGTAATTTCGGTGATGATTCAGAAAGATTGGAAAAAGAACTTTCTTATGAAATACAAAATGAAGGACTAGAAACATTATTAAATCACTTGAGACTTAGTGGCGATATACCAGAATCATATGGTCATGATACAAGCGAAGAAAAACAGTATTCTAAATATACTGACGCTCTTCTTTCTGAGTTATATAAGGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA //