Array 1 345-852 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQH01000057.1 Pseudomonas aeruginosa strain PA_4823 NODE_5_length_412275_cov_8.25905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 345 28 100.0 32 ............................ ATAGAGTTCATCGCTAGATCAAAATTCTCGGC 405 28 100.0 32 ............................ CGGCTACGCGACCGGCACCAACAGCGCCGCGC 465 28 100.0 32 ............................ ACGAACGAACAGTTTTTTCAGGTTTTTCATAG 525 28 100.0 32 ............................ ACATGCCCGAACACAGGGGCGCCCCATCCGGC 585 28 100.0 32 ............................ AGAACGAGCCCCGTGTATCGGCTTTGGACTCA 645 28 100.0 32 ............................ TCGATCACAGCAAGCCCTACCTGACGGTCGAT 705 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 765 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 825 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAACAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35852-33698 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQH01000009.1 Pseudomonas aeruginosa strain PA_4823 NODE_15_length_177567_cov_7.81306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 35851 30 100.0 36 .............................. TTGACCACCGGGAAAGAGAACGTGAGAGCCAGTGGT 35785 30 100.0 36 .............................. ACTAGCCATCTCATCCGGATAAGCGGACTTATCTGT 35719 30 100.0 37 .............................. CGGGCTGGTGGTGGTTTCAGGGGCGGGTTGTTCTGGT 35652 30 100.0 37 .............................. CGATGATCCTGGCCCAGCGCTCCCAACCCTACCGCGT 35585 30 100.0 36 .............................. ACAAGGAGCACGGCGAAGTCGCACGGCACACGGTGT 35519 30 100.0 35 .............................. GCAGCCAGGATCTGCGCCTCGTAACCGATCCGCGT 35454 30 100.0 37 .............................. ACATTGATCGGCGACGCGGTACCGTTGTTGAACGTGT 35387 30 96.7 36 ....T......................... TGGAACTGCCGACTACTCGGCGGCGAAAGCACTAGT 35321 30 100.0 35 .............................. AACAGCGCAGAAATCAGCAAGGAACTCTACGACGT 35256 30 100.0 36 .............................. CTCAGCGAGACGATGCTCAAAGTCATTCACGAAGGT 35190 30 100.0 36 .............................. TCGCCGAAGGCCTCGATTTCGACCGGCTCACCAAGT 35124 30 100.0 36 .............................. AATGACGCACTCGCCGGCGCCTACAGCTATGTCCGT 35058 30 100.0 35 .............................. GCGAGCTTAGCCACCAGCTGCTCATAGTAGTCGGT 34993 30 100.0 35 .............................. TCCTACTGGGTTGAGCCGGAGATCGCCGGCCAGGT 34928 30 100.0 35 .............................. TATTACGGTTCTGGGTGCAGCATCTGCGGGGGTGT 34863 30 100.0 36 .............................. ATGATGCCATATTCGTGCTGGTTCCCGGTACACAGT 34797 30 100.0 37 .............................. CAGCCGTTGAGAAACGAGCTTGGAGTCCATGACGTGT 34730 30 100.0 37 .............................. TCATGCTGGAACGCCAACGATCCGAACGCTCCATAGT 34663 30 100.0 35 .............................. TGGTGGTCAGTGATGAGGCGTCGCAAGCACTAGGT 34598 30 100.0 37 .............................. GTGTTCCAGAGCCTGCTGGCCCGCGCCCGGCACCTGT 34531 30 100.0 35 .............................. TCGCCCTGGAGCGTGAGCCTGGTTGGTGGATCTGT 34466 30 100.0 38 .............................. GTCAGCAGCCGGGCCTGGAGCGTCACGCCCTGGCTGGT 34398 30 100.0 38 .............................. TCGACGCTGCTACTCAACGCCGCCGGCCTACCCGATGT 34330 30 100.0 37 .............................. ACGGCGACCCTAGAGTTGCGTGAGCGCCCGATCCTGT 34263 30 100.0 37 .............................. TCCGCTACCACGGTGGCAAGTGGCTGCTCGCCCCGGT 34196 30 100.0 36 .............................. CTCAAGGGGCTGAGCGGCATGGTGGTCCTCTCCGGT 34130 30 100.0 37 .............................. ACTGCGGGAACCGTCAATGGCGCTGGTCAGACTGGGT 34063 30 100.0 37 .............................. GGCGAGCAGTCTCGGCAGGAGTCGAGTATCCAGGCGT 33996 30 100.0 37 .............................. ATATCGAGGTTGAGCGTTTAGACAGCCGAGAACGCGT 33929 30 100.0 37 .............................. GGCGAGCAGTCTCGGCAGGAGTCGAGTATCCAGGCGT 33862 30 100.0 38 .............................. AAAAACGCTCAGATCAAGCGCTATCGCGCTCGCCTGGT 33794 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 33727 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 99.4 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGGTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAGGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGATCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //