Array 1 548-883 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000113.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 548 30 96.7 31 .............................G GCACGCCGCCCGGCAAGTGGGAGCGCCGCGG 609 30 96.7 32 .............................T GCCTCCAGCAGATCCATGCCGCGGCGCACCTC 671 30 100.0 31 .............................. GGCTGCCACTGAGTGGTGTGGCTGGTCGGGT 732 30 96.7 31 .............................C TGTGCGCACACGGCGTCGGCGAGTGCCTGCC 793 30 93.3 31 ............................GT CGGCACGCCGCGAGGCGGACCTGCGCGCGAA 854 30 90.0 0 ..............G......A......T. | ========== ====== ====== ====== ============================== ================================ ================== 6 30 95.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : TCCCGGCGGCCCGGCTGACGGGCGGTGCTCGCCGAGCGCGGCGCGTGGCCGCGCGCGGTGGTTGCAATGCGCGAACTCGGCGAGTGCGGTGCGGGAGCCCTGCACTCTCAGGGCTCCCGAGCGAGCGGCCGCGCGTGGCGCCAGCGTGCGAAGCCGCACCGTGCGGCGGTGGTACATCACGGGCAGGACGCAGGGATCGACGAGGACCGCACCTTCCGGCTCGACCGCATCGCCTCCACGCGAACCTTGCCCGACCCCTTCGAGGCGCCCGCGGGCCCCGGCTCGACGCAGTGCGTGTTGCAAGGCCTTCGCCACGGTTGAGGGGTGGGGGTGTTGTTGTCGTGCGGCACGGCTGACGGGGGTGCGTGGGCGGTAAGTTGAGGGGGCGAATGTGTGCGGGTCGGGGTGTGTGGCTGAGTGGGGCTTGGTGATCTGTTGGGAACGGGTGCGAGGTGAAGCAGATTTCGGTTACTCGCTCGTAGGGGTGCAGGTCGGGAAGT # Right flank : ACGGCCGTTGGCCTCGACGCGCATCGAGGTGAGTGGTCCCAGCGCGCAGGGCCGGTCCAACTCCCGTAGGAAACCGAGCAAAAAGGCGCCCTCGAACCCGCTGTCCCTCCCCCGTCGAACCGTCAACCCCGGCCGTTCACTTGACGCAATACGGCCGACAGTCCGAGTACCCAGGTGGACGCACCGCGTGCCCGGTACACGTCGTTCGGGAGGCTCTCGGACTGGCAGGAGCCGGGTGGTTCGCAGGCCGCGTGAGGGAACGTCGTCCTCCGCTTTCTGCGGCGCTCACCTGGGCAGTCTCCCGCCGTCGGCGCCCCGTGCGGGAAGCGCGGCTGGCACGATGGAGCGGTGCAGTACACCTTTCGCGTCCTGGGGAGTACCAGGGTTCATCGCCCCGACGGCACCGAGTTGCCGCTCGGTGGTGCGCGGCTGCGTGCGCTGCTCACCGTGCTCGCGGTGGCGGGCGGGCGTGCGGTGCGTACGGGGGAGCTCGTGGCGGA # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3996-3235 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000114.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3995 30 96.7 31 .............................T GCGCGACCTGCCCGTCGGCCTCGGGCAAGCT 3934 30 93.3 31 ............................AC GCACCCTGCATCCCTCCCCACCGTCGGGGGT 3873 30 100.0 31 .............................. CCCGCGCCGACGAGGAGATGTGGAAGGGCAT 3812 30 100.0 31 .............................. GGACGCCGTGCCCTACACCCAGCCCGGACGG 3751 30 93.3 31 .....................A......C. CCTGCTGTCGCCGCGCGAGTACCGGCAGGCC 3690 30 96.7 31 .............................T CGACGCCGTCGAGCGGGTACGCGAGGGTGTG 3629 30 100.0 31 .............................. AGCCGGGCAGCTCTTCCCTGCGGCCGGCTTC 3568 30 100.0 31 .............................. GGATGCCCTTCAGCCCGACCAAGCCCGAGGC 3507 30 93.3 31 ............................CT TCGGCTGCATGAGCTTGGCCTTGGTGCCCCA 3446 30 93.3 31 .........C......T............. ACAGTCCAGACAACCACCGGCCGGCCGTTCT 3385 30 96.7 31 .............................A CGGCGACGATGGTCGCCGGTGCGATGGAGCT 3324 30 86.7 29 ..............G............GCT GAGCTCGCCGCCCTGCCGGGCGCCGGCCA G [3298] 3264 30 76.7 0 .C............T..C...CC.....AA | ========== ====== ====== ====== ============================== =============================== ================== 13 30 94.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCGG # Left flank : CCCGCCAGCTCGTCGACCGGCTCGACGACACGGGATGGTAGGGCAGGTCCGTGCCCACCTACCCGCGAGTATCGTGGGCGGGAGGTGTACGAGCCTGGGGCGGGCCGGGGTCGGTCGGCTCGGCTGGTTGCCTGCTGTACTCGCCGCGCACGATTATCCGTTCGTGATCGAGCCCTCTGAGGAGCTGCGCGCCCGCGTCTCCGAGCTTGCTGGTCGCCTGGGGGTCTGTGCTGGTCGGGGTTGAGGGTAAGGGGGTGCTGTTGTGGTGCGGCACGGCTAACGGGGGTGCGTGGGCGGTAGGTTGGGGTGCGGAGGTTTGCGGGGGGTCGGGGTGTGTGGCTGAGTGGTGCTCGGTGATCTGTTGAGAGCGGGTGCGAGGTGAAGCAAATTCCGGTTACTCGCTCGTAGGAGTGCAGGTCGGGAAG # Right flank : CCCCCGTAGGAAACCAAGCAAAAACGCACCCCTCCCCGACTGCGCACCCGCCCCCGTCGAACCGTCAACCCCAGCCGCTCACTTGACCAACACGGCCGACAGCCCGATTACCCGAGTGGACGCACGCCTGCGCGGGACACGTCGTTCGGGCGCCGCGCGGCCGCGCCGTGGGTACCCGGAGGCATTCTGCTCCCTCTCTTGGGCGCGGCCCGCACCGGGCGCCGGGCGCGTACGGAACCGGCCCGCCCGGACGGGGCGCGCGGACTCCGCAGGGGCGGAGCCGCCGTTCGGGCGGGCCGGAGCACGGGGAACGTAACAGCTTGCAGAAAGATGTGGAAGAGTTTTCGCGGGGCTCGCCGCATCCCGACCGGCCGCATTCCGGGGGGAGTTGAGACATGCGGAGACGGCGCGCCGGCCACGCTCGGCCGACGCGCCCCTGCGGCGCCCTCAGCCGCCCGCCGACGCCTGCGCCGTCGAGCCGCGTACGACGAGCTCGGGCT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16-471 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000143.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16 29 96.6 32 ..............G.............. TCTGTTGTTTCTCTCCCTAGGCGACCGGTTTT 77 29 100.0 32 ............................. TCCCCGCCCTCGGCGAGGGCTTCGTCGACCAG 138 29 100.0 32 ............................. TTGAGGTGATCGCATGACCGTCCAGCAGGCCG 199 29 96.6 32 ............................G GTTCGGTTCTCGATGCCCGCCGCGGCGTCCGA 260 29 100.0 32 ............................. CGCCTCGAAGGCATCCGCGCCGCCGCCATCCG 321 29 100.0 32 ............................. GCGCTACCGTCATCCTGCGACCCCTGGAAGAG 382 29 100.0 32 ............................. CTCGCCTGGGTGCCCGAACTGATGTGGCCGGC 443 29 93.1 0 .......................A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GAGGGCCTTGTCGAGG # Right flank : CATCGCCTCGACGGCGAGGGCGGCCTCGGCAGCGTATGACAGCCCGACGAGGCCACGCGCACGCCCCGTCGGCAACCGCTCACCGGCCACGACCAAGGCGCCACAGCGACACCCGCCAGCCGCGCCTCGAGCGACGTCCAGCAGCGCCCCTCGCCCCTCCCGCCTCACCCCCGCGTCGACGTAGACCACGCGCGCGGGTTCGGTGGGGATACTGGTGCCGATGTCGAGGTACTGGCGTACGCCGTGCTCCCGGGCGAGGAGCCGTACGGCGCGCAGCAGGAACGCACGGTTCTCGCGGGCGGCGGTGCTGATGTGCGGGAAGGCGGTCTTGACCTGCTCGGCCGCCGGGCGGCCCGCCTCGAACCGGTCCTTGCCACCCAGGTGGTAGTCGTACATCCGGGCCGACTGCGGCCTGGTCGTGTCGATCTCCTCGCGCGGCTGGGGCACGGGACCTCCGGGGTGCTGCTCCCAACGGCCTTGCGCACGGGGCTCGTTGGACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59985-60195 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000222.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59985 29 100.0 32 ............................. CCAGTCACGGTGCCGATGCCTGCGTCGGTCGA 60046 29 100.0 32 ............................. GCCGACCTCACGGTGGAGACGACCGAGCAGGA 60107 29 100.0 32 ............................. GACTCGCTCAAGGCCGTCGGTGCCCTGATCCT 60168 28 82.8 0 ...AC........A...-..........A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCG # Left flank : CGCGCCTGCGCGCCTGCTCGGTGACGACGAGCCAGTCGAGGTGCGCCGGTCGGCCGGGACCGAAGAGCACCCCGCCGAGGAGCTGTTGCGCCCCCGGCCGGACGAGTGCGGTGCCGCGGACGAGATGCCTGCCCAGCGCCCGCCGGAAGCCGGGCACTTCGACCATGGGACCGAACCACTGCTCGACCTCGGCCGCGAGGCGCAGCAGCCCGTCGGTGTCCTCTTCCGTCGCCGTGCGCACGCCCGCCATCCATGCGATTCTGCCAGCATCCCGTGCTCGCAACCCGGCGCCTCGCGCCCGCAACAGGGCGCGCTTCCGGTGGAGTTGTGAGACGGCACGGCTTACGGGGTGCGCCGGCGGTAAGTTGGGATTGCGGATGTATACGGGGTGCTGGGCGGGTTCGGGGGTGCGGCTGAGTGGGACTCGGTGGTCTGTCGGGAGCAGGTGCGAGGTGAAGCAAATTTCGGGTACTCGCTCGTAGGAGTGCAGGTCGGGAAGT # Right flank : AGTACCGTGTAGGTCAAGACCATGTGCACCTCGGAGGGGACATGAGCGCTCAGCCCGAACATTCCGTAGATCCGCGGGTTCGCCCCATCCCCCGCACCATCGATTCCGTTGCCGATGCGTTGAGCGGCGCCAAGCGGATGGCGTTCTACGCCGAGGTCGGCCGTGCTCAAGAGGGCCCCGAGCTGAACGAGACGCTGCACAAGTGGTGGATCGAGGCCCTGTGCGACGCGGTGCCGGGGCGCGGGCGCCGGCTCGCCAACGCGGACGCCGGCCGCGGTCTACGGCCGCTCCCGGACATGGTCGGCGAGTGAGCGAGCCCCGCCGTGGCTGGACGGTGTACTGCGTCGAGGACGCAGCGAACACGCTGGAGGCCATGCGGCTGAGCGGCAAGGTCGAACTGCACGACCGGGTCGTGCAGTTCCTTCAGGCACTCGCCGTCGAGGCCGGCGCCGCCGTCGACGCGGAGAAGGAACTGCCCGGTCTCCCCATGGGCGACGAGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15492-16008 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000295.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15492 30 100.0 31 .............................. GACTCCGCCCCCGGCAGTGCCGACCATCAGG 15553 30 96.7 31 .............................G ATGGACAAAGGTACCTCCCCTTCGGGGAGGT 15614 30 96.7 31 .............................A GCGTGACCGAGGCGTACGTCCTTCAGCGCTA 15675 30 100.0 31 .............................. TCGGCAAAGACGCCGTCGACCACGTCCGCCC 15736 30 96.7 31 .............................G ACGATCCCCTTCTTGCCGCGGGCTGCGAGCC 15797 30 100.0 31 .............................. AGATGTGCCGGCGCCTCGGCGTCGAGCCGGT 15858 30 96.7 31 .............................G GGTAGAGGCCCGCGGCGTTGAGGCTGTCGGC 15919 30 93.3 31 ........................A....T CCTGGGACGTGCCGCTCCTGCGGGTGCTGGC 15980 29 76.7 0 .............CC......-CC.C...T | ========== ====== ====== ====== ============================== =============================== ================== 9 30 95.2 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Left flank : GCCCGGCGCAAGTTGAGGAACCTGCCTCTCGTGCCGCGGAGTCCTCGAATGCCAGAGCCCTCAGCCGATCGCTCAGGCATCGCCCCGGCAAGCTCTGCCTCGCCGCTCCTCGGAATCTGCACCGCCGCCTCAACCTTCGACAAACGCACCGACCACCTCGACCCCGGGGCCGCGCGGCCTTCTCATCGCGCCTGGCGGTACGGCCGGCAACCGAGTTTGTGACCGAGCATGATCTGCCTTCCTCATGCGAGGAGCACGACACCTTCTCTGACTCGTAGTGTTGGCCAGGGTGCTCCCGGTGTGGGTCGTCGTGAGGTCAGCGAACACGACGATTCCACCGCTCGCGTCCGGGGGCCGAGTCATCGAGCTACCGACCAGCACCGTGAACGAGGCCGCCCGCGGCGGGTCGGCCACCGCAGAGAGGGATGCCTGATTTGTCGCTTTCGAAGAAAGTTGCTTCAACGAGGGACAGCGGCCGATAAACACGCAGGTCAACGAGA # Right flank : GCGAATGCCCGCACTGCGCCTCCCCGGCCGCTTGAGAGATCCGGCACCCGCCAGGTTCCCGCGGCAGTGCGGGATGACCGGGCCGGCCGCAACTCGTCAACCAACGCGCCACCGAGCCCCGTTACCCAGCCGCCACCACTCCCCCCGAACAATTCCCCGCCCACACCCCAGGCGTCCGCCCCCACCACGGACGTGCCCGTTCCAGTTGTCCGGCGAGTCGGAAGAGGCGGTCCTCGGCCCCGTAATCGGTGGCGAACTGCATGCCGATCGGGAGTCCGGTCGCGTCGTCGGTCGTGAGGGGGACGGACATGGCGGGTGTGCCCG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2364-3308 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000296.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2364 30 96.7 31 .............................T CTGGCGCGGGCCCGGCCCGCCACCTACCAAT 2425 30 96.7 31 .............................C TCCGCAGGAACCGGCGGCCTCTCCTGGGGCT 2486 30 96.7 31 .............................A CCTGCGCCCAGCCCCCGCGTCCGCCGCGCTC 2547 30 100.0 31 .............................. TTGATCAGGCCGGCCGTCGCGGCGACTGCTC 2608 30 93.3 31 ............................GA GTCGCAGGCGACTGCGAGGTGATAGGTCGGG 2669 30 96.7 31 .............................T CGATCCCGTTCTCCAGGCTGGTGTGACCGAG 2730 30 100.0 31 .............................. ACCTGGGCTTCGAATCTGATGGCCCCCTCGT 2791 30 96.7 31 .............................T TGGCGAGGGGCGTGGTGTGCGGGGCCGCGTA 2852 30 96.7 31 .............................A CGATCGTGGGCGGATTGCTGCTCACCTCCAC 2913 30 96.7 31 .............................C CGGCTCCGTACACGGGCGCGGAGGTCACCGA 2974 30 100.0 31 .............................. ACGACCAGGTCGGATGGGAGACCGACGCCCG 3035 30 96.7 31 .........................G.... ATGGAGATGGAGCTCAACTCCGATCCGGTGG 3096 30 96.7 31 .............................T CCGGCTGAACCTCGTCCAGGAACTCGGCGAA 3157 30 100.0 31 .............................. CCGACCGCACCGCCATCGAGGAAGCGACCGG 3218 30 86.7 30 ..............A.....A....C...A CCCCGGCAACGTGCTCGTCGGGATCTTCTG 3278 30 83.3 0 .C.........A.......C.T.......C | T [3305] ========== ====== ====== ====== ============================== =============================== ================== 16 30 95.9 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GTGAGTGCGCAGAACGGGAGTGTCGATCAGGTGGGGGAGCGGGTGATGAGGATCGTTGAGGGGGTTGTGGATCGGCGGCGGTCGGCCGTATCGGGTACGTCTGTCGGCTGACGGGGCCGCGGTTCGACGAAATCGCCGGTGTGGGTGGGGGGTTGGGACGGAGCGAGGGGCGGGCTGCGTGTGCCTCTGTGCTCGATGGGAGCGACTGGTGCCTGTTGGTTTTGGGTAGAAGCACCGACCGTCAAACCCCGGGAGCTGTGCTGGAACCTGCCGTACTTTGGTGGCAGTTGAAGGTTCGATGCTGGCGGCCGTCTCGGACGGCACCGGGGGATTGGCTGTCAGCCGGAGGAGATGAGCCCGCGCGACTGTGCTGCAACGGACGCAAGTCCCTTACGGCAACTGTGAAGTTGCTCCGCCGCTGGAGGGTGCCGGATTTGTCGCCTTCGGAGAAAGTTGCTTCAACGGGGGTCAGCGGCCGATAAACACGCAGGTCAACGAGT # Right flank : CACGAACAAGGCCCAGCTCGTAGACGACGTTCGGCCCCCCACGCATGCAGGGACATCCTGTGCCCTCTCAACTTGCCTTCAGCGAAAGCACGTTGTGCACACCGCACTCACCCGGGCACCGTCATGAGCCCCATGCCGCGTGACCGTCCACCGAACCCGGAACGCCCCTGCGCACGACCGCAGACGTGCCGACGAAGAGGCGCCCCCACTCAAAGCCCCGGCACACCCGGAGCACTCCCCCCAAGCCCCGAACGCCCCTCACCCACCCCCGACCATCCGCACAACCCACCGCACCGTCTCCCCCGCGTCGACAACCTGCTGCAGATGCGTCCCAGGCAGCCGCCCCACCTTCCATCCCCGCTCCCGAGCATCCGCCGCCTCACCGTCGTAGGGCGTACTGAACTGCAGGTAGGAACAGGGCGCGTCCCCCCGCTCGAGAGGCACGGGCAAACGCTGCTCGAAGTAGGCGAGAGGCAGGGCAGGTTGCTCCTCGACGATCG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2859-3132 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000297.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2859 30 100.0 31 .............................. CTGACATCTTCTTCCGTTCAAAACACCGTGA 2920 30 100.0 31 .............................. GCGAGATCACCCGCCCGGACTGGACCCACCT 2981 30 100.0 31 .............................. GCGCCGGCCGCGCCGCCGGAATCGACCCTTG 3042 30 96.7 31 .............................G GCCTGGAGTCCGCGAGGGCCCGCGGCCGGGT 3103 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 99.3 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Left flank : CATCGTGGCGGTGTAGCTCAGTCGGTAGAGCAAGCGGCTCATAATCGCTGTGTCACCGGTTCAAGTCCGGTCACCGCTACTTCACCGACAGTAGCCGATTGCAGGGTCGGTCCTCCGATCGGCTACTATTTCTGCGTTTGTCCATCCGTTTGTCAAGGAGCACTCAACGTGGCTGCCACAGACGTCCGCCCGAAGATCACGCTGGCCTGCGTGGAGTGCAAGGAGCGGAACTACATCACCAGGAAGAACCGTCGGAACAACCCCGACCGGATCGAGATGAAGAAGTACTGCCCCAGGGACAACCGTCACACCGTCCACCGCGAGACGCGCTGACGTTCGCGCTCCGAGGGCCGGAAGTTTTCCGCGAGGCCGCTCCCTGCGTTGTCGGGGGGCGGCTTTGTGGTGTGTGCTTGGCTCTTGCGGCGATGTCCGATTTGTCGCTCTCGGGGAAAGTTGCTTCAGCGGGGGTCGGCCGTTGAGAAACGTGCAGGTCAACGAGA # Right flank : GGCGTGCGAGGGATGCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000298.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 33 30 100.0 31 .............................. TCCACGCCTCACGCTGGCGGTCCCAACGGCC 94 30 96.7 32 .............................C TCGGCGTGCCCGATCACGGAAGCTGCGCCCCA 156 30 96.7 31 .............................T GCCGGGCCGCGGCGCGGGGTGTCGACCTGTC 217 30 100.0 31 .............................. CCTCGGCGCTGTCGCGCAGTTGTCGGTAGGT 278 30 100.0 31 .............................. TCAAGCGAACTCTCTACTCCGGCTCGGACGC 339 28 86.7 0 ....-............-.......C...A | ========== ====== ====== ====== ============================== ================================ ================== 6 30 96.7 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : TCGCGGACTACACCGCGGTGGCGCAGTACACCC # Right flank : ACCAGCTACCGCACGGTGAGCTGGCTGATGCCCGGCTCCCCGTGAGCCGGGGCCCCGCGCATGCTCCCTGCACCCCGCCCCAACCACCCCCATAGGTATGCTGCTCCCCGCACACGCGAGGGGGGCGGGTGCATCCCGCGGGGGTGCCCCCTCGGCCCGTCGCGGCAACCGCACCCCCCATCGGGCAGACGAGGCGCGGGGCACCGAAGCAGCAGGAGGTGGCGCCGATGGCGCTCGACAAGTCCTTCGAGGGGCGGAGTTATCCGCCGGGGCGTACCTACGAGGTCGGCAGGGAGAAGATCCGGGAGTTCGCCGAGGCGATCGGGGACGCCAACCCGGCCTACACCGACCCGGAGGTGGCGCGGGCCCTCGGGTACGCGGACGTGATCGCGCCGCCCACCTTCGTCTTCTCGCTGACGTTCCGGGAGGCGGGGCAGGCGCTCCAGGACCCGATGCTCCAGCTCGACTACAGCCGGGTCGTCCACGGCGACCAGAAGTTC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1045-2054 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000309.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 1045 30 96.7 31 .............................C AGATCGGTTACCCGCCGTTCACGGTCGCCTC 1106 30 100.0 31 .............................. CCCGGCAGCGGACCAAGCTCGCGCCGTTGCT 1167 30 100.0 31 .............................. CCCGTGCCAGCAGTCGCTGGTGGGTCTCCAG 1228 30 100.0 31 .............................. CCCCCGAGGGGCAACGGCTGTGGGAAGCGCT 1289 30 96.7 31 .............................A AGGTATGGGCTCCGAAGAAAGCCGGTGACGG 1350 30 100.0 31 .............................. CCGTGATCCCGGGGACGAGGGTCCAGTCATC 1411 30 96.7 31 .............................G GGCGGCTCTTTCCGGGGGTGCTACTCCCCGG 1472 30 96.7 31 .............................G CGTGGAGGATGCGGCCGGGCTCGTGCCGCTC 1533 30 96.7 31 .............................A CGAGCTGGAGCACCTGTGGCTGCGGTTCCCC 1594 30 100.0 31 .............................. CCGCCTGTACCCTGGTCCGCTGGTTCGTCAT 1655 30 96.7 31 .............................C ACGGCCCCGGCCGCGGCGCGAGCTTCGACGA 1716 30 96.7 31 ........T..................... CGGGGACGAAGTCCTCGAACTCCATGCCGCG 1777 30 96.7 31 .............................C TGATCTGCGGCCTCGGGCTGGACCCGCGCGT 1838 30 93.3 31 ........T....................G AACCACTCCAGAAAATGATGTACGGGCTGAA 1899 30 90.0 33 ........T............G.......G TCTTGAAGGCGATCACCAAGGAGAGCGGAGGCA 1962 30 96.7 31 .............................A CCTTCATGTCCCTGCGGCGCGGGGTCGCCGA 2023 30 90.0 0 ....................A....T...C | GT [2032] ========== ====== ====== ====== ============================== ================================= ================== 17 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : GCCGGAGATACCGGAGCCGCCGGGGGAGTTGGTGGCGCGGGGGGTGCATCGGTGGCGGTTCGAGCGGGTTTGATAGGGGCTCGGGCAGGCGTGCGGGGGTGTGCTCACTGACGGTGGGATGGGTGCCGGGGACGCTCACGCGACGTGGAGCGGTGTCTCCAGGAGTGCCCTTCGCTCCGAACACCTTGCTCGCGTCGGGGAGTTGCGTGGCCGGGCGCTTCGCCTTGGCAGAGCTTCGGGGTCGGGTCGGAGCGAAGGCTGACGCCGAACGACGGGTGTGCTCGGGGTACTTGCTCGCTCACGCTTCCTGCCGCTTGCGTCTGCGTGGTGCTGACCGGTCCGAGGTGCGAGAGTGGCAAGCGGGCATGACACCGAGCCGCCGGGGGAGTGGCCCTCACTGCAAGGCACGTTGACCGTCAGAGTGGGAGTCCGATTTGTCGCTTTCGAAGAAAGTTGCTTCACAGGGCCCGAGCCCCGGATAAACATGCAGGTCAACGAGA # Right flank : CTGACTCGGTCCGATACTCGGACAAGCTGCCTACCCCACGCGTGCTTGACGAGGGCCTACAGGCACCCCCGTCAAAAGGCCAACCCGCCGCCACCCAAAGGACAGTTCAGCCTTCACCCGCCAGCAACCGACTCCCCGACGGCAGCCCGATCCCGAACTCCTCGTCGAGGACGCGCACCGCCTCCGCCCCGTCGGCGACGGCGCGTTCGCGTCGGGTCCCGTCGGCGAGGGATTCGGTGAGGGTGAGGGCGGTGCGTCCGGAGAGCTTGCGGTGGGCGCCGCCCGGGAGGGTGCGGACGATCCAGGGGGCCTGGGAGAAGGGGGAGCGCGGGTTGGTGGCGATCTGCCAGTTGGCGACGTCGAAGTCGGGGGCCTCGAAGGGCTCGATGGTGAAGCCGTAGAGGCGGTTCCAGCCCTGGGGCGTGAGGGAGTGCAGCTCCCAGTCGGCGAGCGGGCGGTCGGCAGTGTGCTCGCGCAGCAGGCGGACGCGGTGGCCGCCC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8798-9800 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000359.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8798 29 100.0 32 ............................. TCCGCCCAGGTGGTGTGGCGGTTGAAGCCGAG 8859 29 100.0 32 ............................. AGTCTGCGGTTTGGCGGGGACGGGTGCCTGTA 8920 29 100.0 32 ............................. TTGGCAGGACGGCAGTTGACCGGGAGTGCGGT 8981 29 100.0 32 ............................. CGCCGCCACGGCGCAGATCATCCGCGCCGACG 9042 29 100.0 32 ............................. AAGGCGGGCGGCGTCGAGACGAACACGATGAA 9103 29 100.0 32 ............................. CTCGGGGCCTCGATCACCTCCCCACAAGGGGA 9164 29 100.0 32 ............................. GGCGTCACCGCCGCGACGAGGTCGGCGATGGG 9225 29 100.0 32 ............................. AGGACGTCGGCCACGGCCGGTCACCCCACATC 9286 29 100.0 32 ............................. TCAACGGCGTCGAGTACGACTTCACCTGCGAA 9347 29 100.0 32 ............................. AGCGCGGTTCCGACCTGGGGCCGTGCTCGGTC 9408 29 100.0 32 ............................. GCCGCCGGCGAGACGACGAGCGCCGGGCCGGA 9469 29 100.0 32 ............................. ACCCGTGAAGGCGGGTGTTGGTGACCATGTGC 9530 29 96.6 32 ............................A CCAGCTCACGCCCTTCGTCATGCTCGGCGTCC 9591 29 100.0 32 ............................. GATGCGGCAGAAGATGCAGTCCACGGCTCGCT 9652 29 89.7 32 ...........C.........A...A... TGCTGCTCGGCGCGGTCGTATAGCTCGGCGGC 9713 29 79.3 29 A.A..........A.......A..AC... TCGTCGCGGATTACCTCCGCGCCCCCCAG GC [9728] 9773 28 79.3 0 ...........C.....-.A..A.CA... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 96.8 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGGCCGGCAAGGACGACCCCGAGAAGGTGAAGATCACCAAGAAGGTCCCCGTGGTCGGCTCCGTGACGGTGATCAGCTCGGCGACGATAAAGGGCAAGCACACCGTCCGCCTCAACGCCGACGAGATAAAGGGCGAGGGCCCGCTCGGCATGGCCAAGGGCGTCCTCGACCGCCTCGTCCGCGACCGGATCGACGACGACTGGGACTTCGACGCCCTCCCCTCCGAACTCAAGCTGGAGGAGGCCCGCCCCACCGAGGAGGGCATCGTGGTGACCCTCAGCGGCAAGGACGTGAAGTTCACGGGGTAGGACGGTTGATGGGCCGGGTCGGCTGCTGCGGGAACTCTTCGCTGCCGGGGCAGAGTTGGTCGTGGCAGCGGGCTGGGTGAGCTGCTCGCGTCGGGAGGTGGGTGGGCTTCTGTCCTCTGTTGCGTATTGCCGGATTCTGCGGAAGTTGCTTGGGGGCGGTTTCCCGGCCGATGAAGACGCAGGTCGCGGAGG # Right flank : CCAACCAGCAAGCTCTCGACGCGAGTCGACCCCAACGGAGTCACCCACCGCAACGTCCCACTGCGCGAGACGCCCCGTCCGGATGCCAGGGACAGAAGGCCCCGGACTCCCCCGCGGACCCCGGCAGCGCAATCCGACGCGTATCCACGTCTCAAATCCCGGCCAAGAAATTCTCACCATCCGGATCGCCGGTGACACGGTCCCCACTCTCTCCTTACGATCGGAGCCATGAAGCCACAGGCGGACCTCACCAAACGACGGGCGGTCGATCTCTGCCGCGTCGCCGCCATGCTCTGTTCCGCGGCCCGCTGATCGGCCGCAGCCGACCGCGCCCGCAGCCCGTCGCAGACGTCCGCAAGCGGGCGGACCCGCGACCGGCGTGATGTCGAGCGGAAGCGGCGTCGATCCCGCAACCCGGCGCTTCCGGGCGGTCCGCCGCACCCACGACCGTGCGGGCCCGTCCGGCTGCGCATCCCGTCGCCCGAGGCGGCGGCGGACTC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67529-68248 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000078.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 67529 30 100.0 31 .............................. CGCGTTTCGCTGTTGCCAGCGGGAGGTTTTA 67590 30 96.7 31 .............................T CCATACTCCTTACGATCTCTCCCTGCTTCGC 67651 30 96.7 31 .............................T ACTTCTCCCGGCTGCTCGGCCGCACCGAGGT 67712 30 100.0 52 .............................. GCGCACGCGGGGATGGACCCCGCTACTTCCAAGCCCACCCCGAGCATGTGCT 67794 30 100.0 31 .............................. AGGGCGAAGCCGCCGCCGGACAGGCGGCCGA 67855 30 96.7 31 .............................A ACCCCTGACCGCGCGGACGCCCACCGTGCAG 67916 30 96.7 31 .............................A CCTCCGAAGGTGGGGCTACTCGGTGTGGTGC 67977 30 100.0 29 .............................. TCCGGAGAGAGATCGAGTTCCCTCAAACC 68036 30 96.7 31 .............................A AAATCCTTGGCGAGTTGGGCAAATCGAAGCT 68097 30 100.0 31 .............................. GGATACATCGGTGAAAGCACGTCGGGAGAAA 68158 30 96.7 31 .............................T CGGCCGCTTGCTCGGGGGTCCAGGGGGAGTC 68219 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ==================================================== ================== 12 30 98.1 33 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : AGCCACACGGCGAGCAGCCGCGCGTGCTCCTCCCCGCCCGGCAGGGCTTCGGCCACCAACTGCCGTACCTGACGCGGCAACCAGTGGTCCCACAGCAAGCCGGCGACCGCGCCGCTGTCCGCCATATGCCGCCACAGCGGCAGCCAAGCACCGCTCCTGCCGCCGTCGCGCTGGTCGGACTTCGCCCATACCTTTCGGGCCGGGAGCGACAGGGTTTCGCCCAGATGGGGCGGAGGAGGAGGGGCGATGGGCATGCGGAGGATTAGATCCTGTGATGGGGGTGGTGTCAGGGTGTTGAGCGAATTTGATCGGTAAGTTCTTCTGTTTGTCAGTGTGTTGGAGCGGGTGATCGAGTTCAGAGGGTGGGGATGTGGTTGGTGTGATGTGGTGTGTGGATGCGTCGGTTGGTGGGTGCTTTGGGCAGGGTGAGTGAAATGACCGAATTCCCAGAAGTTGCTTGGGAGAGGCTTGTCTTGGGATGAAAGCGCAGGTCAGGGAGA # Right flank : ACGTACGCCTCCCCCAG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-693 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTQ01000079.1 Streptomyces xiaopingdaonensis strain DUT 180 contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 33 30 96.7 30 .............................C CCGCCGACCTGTACCTCACAGGTTGCCGAC 93 30 96.7 31 .............................T GCGTATCAGCAGGTGAGAGCGTCGCAGTCCG 154 30 100.0 31 .............................. CGATAAGCGGCGGGTGCGAAACCAAGACTGA 215 30 96.7 31 .............................C ACTGGTGCCGGTAGACACGGCCGGCGGTGTC 276 30 96.7 31 .............................C TTACTAACGCGCGGGCCCCACGAGGGGGCAA 337 30 100.0 30 .............................. ATGCGGCCCTCCGCCGTCACCTGGTCAGGG 397 30 100.0 31 .............................. CATCAATCGGCCGGTGCACACCACAGCCCTC 458 30 96.7 31 .............................C CGGCCAGTTCCGCCGCGTCGTTCTTTCCGAA 519 30 100.0 31 .............................. CGGGTCACCACGGCCACACCACCCCGGGCTC 580 30 90.0 53 ......................C.C....C TTCACCGTCGCGTCCGTGCCACCCGGCACCAAGCGCAGGCCGGCTGCCAACGG 663 30 76.7 0 ......G...T..T...C.CC.C....... | C [666] ========== ====== ====== ====== ============================== ===================================================== ================== 11 30 95.5 33 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : TTGATGCGCCACCGCCCGCTGGCCCCGCCGTCC # Right flank : GGAAGCGTCGCACGGCACGGAGCTCACCGTGCCGATCGTCGCCGACTTCGCCGCCGTGCTGCGGTTCGCCGTCCTCCGCAGCTGGGCCCCTCTCCGACCCGGGCGGCCACCGCGCTGCGTCCACCGGTCCCGACCACGAACGGCCCGAGCGTCGACGATCCTTCACGGCCATGCCGCACCCGAGCCGACCTTCGGCTTCCGGAGCCGCTGGACGGACCGGCCGCGCTGGGAGCGGCCCGCGTTCCGGGCGCTGCTCCTCGCGACGGGGCCCTACACCTCTGGGGCCCGGCGCTTCCTGATACGCCAACTCGTCCTGCTCCGCGGCCGCGCAGGCCGGCGGCGCCGGCTGGAAGGCGTTCCTCTTCGGCTCGCTCGACGCGGGAACACCATCGCCATCGACAAACGTCCGGGCGCGCTGTGGCCGATGGGACTCTCGGTCCGCTCTTCGAGATGGGGAGTTGACAGTTGCTGGTGCGTCAGGCCCTGAGGGGCGTCGCGGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //