Array 1 166079-165733 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAM01000009.1 Campylobacter concisus strain AAUH-12CDce 1100354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================= ================== 166078 38 100.0 39 ...................................... CAGCAAATAATGTTTGCTCAAATTGTGTAAATCTGTCGT 166001 38 97.4 39 ....................C................. ATTTTTCACTTTGAGTTCTATGTTTCCATGTAAACTCAC 165924 38 97.4 37 .......................T.............. TTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 165849 38 100.0 41 ...................................... TGTTTGTCATATTTGGGTTATCCCACTGGTCGCACTTACGT 165770 38 84.2 0 .............................GC.A..TTC | ========== ====== ====== ====== ====================================== ========================================= ================== 5 38 95.8 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAACA # Left flank : TTTATAGACTATGTCGTAAACCAGCCATCTTTGAGAAGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAATCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : CATAATCCATATATAAATTTAGGCCATTTCACATACATAAAAAGTTGTATTTTATTTTTGAGACGTATTATGATAATAGTGCCATCTATCAAAAGAAACACCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAGATCTATATAAGAAAGCAAAAGCATTCAAATTGTCCTAAGCTCAAATAGTCTATTACCAAGAAACACTATGATGCCTACTCAAATGTGGTCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTAGCAAAGATAGAGTCTAGTCGTCAGCACTTTTTATCGTAAAAAGTATTTTTCGCAATTATTTTTTACACCAGTGATATTATCATTTATAATAACTTTTGAGCAGAAATATTTTAATGTGAGCTTGGCATTTTTAAAAAGGTAGTTTTTATCTTAATATTTAACGTCTAAAAATAGGTGCCATATTGGGTGCCATCTACTTAAGCATTATTAGCAATTTTAAT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 174467-172776 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAM01000009.1 Campylobacter concisus strain AAUH-12CDce 1100354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 174466 37 97.3 35 .....................C............... AAAACAATTTTGAATTTTTGCATATTTTGCTCCTT 174394 37 97.3 36 .....................C............... ACTTTATGAATATTGTCTAGTATCCCAGTATTTATA 174321 37 97.3 38 .....................C............... GCTACCGAAATATTCGGTAGTACCAAATTTAGCCTTGG 174246 37 94.6 37 ......................TT............. AAGCTATTTGAATAGCTTCCATTTGACTTTGATTAAT 174172 37 100.0 37 ..................................... TAGCTCACTTGATTGAGCACTTAGCTTTTTAATTTGA 174098 37 100.0 40 ..................................... GAAGTCAAGAAATTTTTTATTGCTTCTTTACCTTCAGCCA 174021 37 97.3 41 .......................T............. TCGTGAACAATTACTGCAGATAAGTATTCAGGTTTATTAGG 173943 37 100.0 41 ..................................... ACTTAAGTAATAAGAAGCGCTTGACCACGAGCGGCTTTGAT 173865 37 97.3 37 ......................A.............. ACTAGTTCAGTTTTGTTCATAATGTATCCTTTTGGAT 173791 37 97.3 38 ......................A.............. TCATCAGTTTCTCCATCAGTCTCTGAGTACTGAATAGG 173716 37 94.6 34 ......................TT............. CCATCACAGCGTAAAAAGCCGTTTGGGATATTTG 173645 37 100.0 39 ..................................... AGTATTATTAAACTAGTTATTATTGTCGCATGTCCTATG 173569 37 100.0 38 ..................................... AGTTTTTCTTTTGTTTGTGAATTAAATTTTGGATTTGG 173494 37 97.3 35 .......................T............. TAAAGTAGGTCACACGCTAGTTGTGGGGCGGTCGT 173422 37 97.3 36 ...................A................. ATCAGCTTCCAGCCTAGATATATGCGGCAGTAAAAG 173349 37 100.0 39 ..................................... TCATCATACTGCATCTCTTGAGGCGCATATTGCGCTTGT 173273 37 94.6 35 ......................TT............. TAAGAGTAGGCTTTTAAATTTATGATAGCAGTCGC 173201 37 100.0 36 ..................................... AAGACATCTCCTGCTTTAATTTGAAGCATAGGTAGT 173128 36 91.9 42 ..................T...T-............. TTTTTCTCCTCAAACATAACACGCTCCTTGTGCTCGCCCGTT 173050 36 91.9 39 ......................TT........-.... TTTATGTAGTGCGTTTTCGGGGCTGTTAAACTCTAGGCT 172975 37 94.6 39 ...................AT................ TTATGAGTCTCATCCATGAGAAATACGTCAAAAAATATA 172899 37 97.3 39 .............................G....... CCATTAGCTCATCATAATCATAAAACTCTGGACTATTTA GGGGAAAAAAA [172864] 172812 37 91.9 0 ......................TT............T | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 96.9 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAACTTATGTAGTTCTTAATTTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATACCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTACATTTATATGTAAAATTAAACTACTTTATCTACAAACACTACCATCAACTTTTTCATACTTTTATTTTTTTTGGAAACGCTTTGTCCATATCTATTTTTATAATTGCTGCATATTTACAAAAAAGAGAAACTAATAAAATATAAGAAGAGGAGATATTAATGAAATATAAAGTTGAAAGATACAAACTCATCTGCAAAAACTGCGGAGAGATATACTACTTTGACTACGAAGGATCAGATGTGTTAGGTAGGGACTACTTCGACCAAATAGTAACAGAGTGCTCTAAATGTGGCTCAAGAGTTTTAGAGAAGCGTGATTTAAATTTCATTGACACAGCGAAGATGAAATTTAAAAAGATGTTAAAACCAAAAAACAGCTACTTTACAAGGTGATAAGATGTTACCACTAATAGCAATTTTTACAAGTAGAGCGATAGTAGATATCCTACAAATAGGCGTAATAACTTTTTCAATCACTGTTTCAGCAGCCAAGACCG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //