Array 1 1110199-1109636 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1110198 32 93.8 32 CA.............................. TCTCCCGGTTGAGCTAACAGAAATTCTGTAGA 1110134 32 100.0 34 ................................ TTATCACATGGACATTCCTAATGTATCAACGGCT 1110068 32 100.0 33 ................................ GTAGCTGTACAAAAACCATCCCAAATCTACCGC 1110003 32 100.0 35 ................................ AGGATCGGATGCATTAGGTAACGCTATTTATGATG 1109936 32 100.0 37 ................................ TTAGGAGTGTCGAACATGCTAATTGAATGGGTAGAGC 1109867 32 100.0 35 ................................ TAAAGACGTACTACGCGGCTCGGGCTGACGTAAGT 1109800 32 100.0 35 ................................ CGGTAGCCCAATACAATAGAGTGGTCGTGTCTGTG 1109733 32 100.0 34 ................................ ATTTTTTGCCTGCTTACCGCAGCACTCCATGGGC 1109667 32 75.0 0 ......................A..ACCTGCC | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 96.5 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATCATGGAGGGAAGCTCATCCTCCGATGTAGCCTCGACCTTGCTCTCTTCATAATAATAGGTGCTTCTAGAGATTTTTAGGACGTCGCACATTGCTGATACCGAGTATTTATGTTTATTCTGGCGAATGACATTTACTTTCGTCCCATGATCAGCGCGGCTTGCTTTAAAATGTCATTCTCCATGAGCAGTTGCTTGTTCTGTTTTCGAAGTTCGATGAGTTCTAGCTCTTCTGGAGTCCGGTTGTCTTTCTCTTTGAAGGATCCAGATGTGGAATTCTGTTTCACCCACTTATCTAGTGATGAAGGATTCAAATCATATTCTTGAATGATATCCTTTCGGGGTTTACCACTTTGATAGAGCTGAACCATCTGCATCTTAAATTCGGTACTAAAGGTACGTCTTTCTTTTTTAGTCATCGTCCGTTCGCTCCTTCTAGTGTTCATCTGTAGTCTACTATAGTAGACCGCAATTTTTCTGTCTAGAAGAGTGTAGCCGATC # Right flank : TAAAAGAATTTCGGCCGCTTAGACATGGGTTAAAATCTCACAGAGGACTGTAGTCGGTATTTTACCGGAGACAGTCCTTTGATCTTCTCTCTGGTTTGTTATGCAAATATTGAGAAAAGTCTATCGACGTATGTTGATATTTGGAGGGAAATAGAGGTGAGATTTTAAGATTTAGATTATTTGCGGAACATTCAGGTGTTCATCAAAGAACGCTAAACAATTGGATTGCCAAATATCGACCTGTTACTATACATCAGTTGGATCGAATCACACTGGTAATGGGATTAAAAGAAGGTCATTTTTACGAACGATACATAGAACATTATATCATCGAACGTTTCCCCGATTGGCAGCGAGTTGAACCGTTGTTGTATCAGTGTGCAGAGCTGGACAAGTTGGAAGCGATTAGGCGAATATGTAGAGGTCATTGTGCAAATGGGAGAAGGTATCATGGGTAGGACACAAGCTGGATGTTTATCCAGATGGGACAAAAGTAAGAT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1111905-1111468 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1111904 32 100.0 37 ................................ TTTTGCTAAATGGCTGCTGGAAGAAACGAATGATGTT 1111835 32 100.0 36 ................................ TTAACACCGGCCGCGCCCTCTTTAAAGAGTATGTTA 1111767 32 100.0 35 ................................ ATTTCCCTCGACGATGTAGAATAAATCCGGTACTC 1111700 32 100.0 33 ................................ AGCTATTTTGTATTGATCAAGTCCCCTATCAAA 1111635 32 100.0 37 ................................ ATACCACCCAGCGGCAACCAGCGCTCTGATATCTCTT 1111566 32 100.0 35 ................................ GTTTCAGGGTAATGCTGCTTATTGCAATGCGTACA 1111499 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 100.0 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CAGCCGCAAGCAGATTTTGGTTTGCCGTATGGAATCGGCAGACGGCGTGTTTCGCTTCACGCTTCAAGAGCTGCCGCGTGAGGCAGCGGAGGAGATTGTGCGTTATAGCGGGGAACTGAACGTATTCCGTTTTGTAACGCCGGAGAACGGAGCCGTTGTGAAGCATTGGTATTACGTCGCCCCGGAAAGTGTACAATACGATGATCAAACTGGGGAGCTTAGGCTCGAAGCTGGTTCTAAGATTGAATACCATCCCGAGGAGTATTGGGGAGATTAATCCCTATTTTTATATTGAATTTTTGAAGGGCTGTCCCGGTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAAGGCTTGAAAAGGGGTGTGGCGATAAAAGTCAATGCTTGATTCATCCCTTTTCGGCATCGTTTATTGCGAAAATGTGTGAAATTGATACCATTAGGGTATGAATCACCCCTTTTTCGCT # Right flank : TAAAGAGATATATATCTCTCCCTCTATCCCCGCCCCGGTCGCTGGATTGTCAACACTAAACTAGACAACTTTTTTGTGGTGTCTCTGTTTGAATTCAGCCGGACTTAAGTAATCCAGAGATCCATGAATCCGAATATGGTTAAACCAGTGCACATAGTCATGTAACTCTGTGGTTAGTTCAGTCAGGCTTTCAAAATGACGTTTCTTCACAAACTCTGTTTTGAAAATTTTAAACGTGGCTTCTGCAACGGCGTTATCATAGGGACAGCCTTTCATGCTCAAGGAGCGCTCAATCTGAAAAGCCTCCAGAGCATCGTCGATGAGCTTATTCTTGAATTCATTTCCTCGGTCGGTGTGAAAGAGCCGAATGTCATTCAGGTTGCCCTTTATCGAAGCCAAGGCACGGTAAACTAGCTTGGCATCCTTGTGTAGCCCCGCACTGTAGCCAATAATCTCGCGGTTAAACAGATCGACAAAGAAGCATACGTAGTTCCAATATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1957971-1957473 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1957970 32 100.0 37 ................................ CGGCCACTCTCCGGATAAGTACGCAACGATCTCGTCA 1957901 32 100.0 36 ................................ AGGATGAACTGAATAATATAAATAGTCGTCTTAAAG 1957833 32 100.0 31 ................................ CGTTGGGTTCTCGGCTGACTATCCGCACGGC 1957770 32 100.0 34 ................................ TTACGCGTGGGGTGCTGACAGCTGAAGCTACATT 1957704 32 100.0 34 ................................ TGATATGTACCCTGAACTATCTGAAAAGGTTAAC 1957638 32 100.0 34 ................................ TTCCAAGATAACGGCCATGAGCGGGATCAGTGCC 1957572 32 93.8 35 .........C..G................... AAACCTTCTTTACGCAATTCACGCTCACGATCAAG 1957505 32 93.8 0 .........C..G................... | G [1957490] ========== ====== ====== ====== ================================ ===================================== ================== 8 32 98.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GCTGCGCGAGGTAACACGCCAAACCATCAGCGAGCATGTACATACGCAACGTATTAAAACCGCCATCTACATGCTGACCGAGTCCCGGCTGACGATTCGTGAAATTTCAGAGTATGTGGGGTATAGTGATGTTTCCTATTTTCATCGGATATTCAAACGGCTTACAGGCTGCTCGCCGTCCGAGTTTCTGGATGAACGATCTTCGATCGTTTAGGCGTGACTTGTACAGTGGAAAGAGAAGGCGGAAAAGGTTGCGAAACTCCGTATTTAAATGTATGTTGGATTCAACTGGATAGACAACAAATACCTCATTTTATAAAGTGCGAATGTGAAGCTCACATAAAAACCCCGGTTCCTTCGCACCTCGAAATTTGTCGAAAAAGGCTTGAATCGGTTGTAATGAGTGAATGTCAATGCTTGATTCAAGCCTTTTCGGCATCGTTTATTGCGAAAATGTATGATATTGATACCATTAGGGTATAAATCACTACATTTCCGCT # Right flank : CAATTACCGATGCCCCAGCGCTTCACTCACAAGTCGCGCTCTGTATGGAGTGCGTTTTTCCCTCTTACTCTCCGCTTCCATCGCTCTTCCTTTCCATTTCCATATGCATTAATATTCCAAACTTTACCTTTATACATTAGTTGCATAATATATTGACAGATGGTTAATTTTGGAGAACAATAGAATGCAAGAATATAAAATTATGGCATTTTTATGTGAAGGGTGGTTTATGTATGGCAATCACACCTACGATAAGAGCTGAATTGGAAAAATATCTAAAACAACAAGATTTAAGCATGACCGAGTTTGGGCATATTGCAGGCATTAATAGGGGGATAGTAAGTGGCATTGTAACTGGTAATAGTCCTATATCTGTTAACCAGCTTGACCGAATCACTGAGGCTATGGGTTTACCGGAAGGCTACTTCTACGACTTATATGTAGAAAACTACATCATCGAACGCTCCCCCAATATGCGTCGAATTGAGCGGTTGCTATAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2168973-2170631 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2168973 32 100.0 37 ................................ TTGCTGGTAGGCATGGGCGTGGTTGTTGTTGGGCTGG 2169042 32 100.0 38 ................................ TGATTATCTGCAGGTGTTTAAATTTATCATGCGCGGGC 2169112 32 100.0 33 ................................ ATTCATAAAAATGAAGCCAAGGCTTTCTTTAAT 2169177 32 100.0 37 ................................ CTCCAATCTGTTTTATGTATGAACAATAAAAAAGCCA 2169246 32 100.0 33 ................................ AGGTCGCCATATACCCGCTGATACTGGATTCTC 2169311 32 100.0 39 ................................ ATCCGGTTTTTAAGCTGACTCTTGAAAAGTTGATAGACC 2169382 32 100.0 36 ................................ TCCCCTGTCGTTTCCGGACGCCAGTCCTCCTGGAGC 2169450 32 100.0 35 ................................ CAGAAAGTGAAATGGACAGAGTTATCAGAGAGGCC 2169517 32 100.0 36 ................................ ACTGACGGATCGAGCACAACGGAATTTGTAGGTAAG 2169585 32 100.0 34 ................................ CACATGTCGGGCAAATAGCTCCACCTTGATGGTA 2169651 32 100.0 37 ................................ ACACTGCTTATCACTCTGTTTTGGGATATTCCAGTTT 2169720 32 100.0 37 ................................ TTGACGTTTGCTTGCATCCGTCGTTATCTTCGTACCT 2169789 32 100.0 37 ................................ CACTATAGATGTGCCTATATCAACCCAACCAGAGTTG 2169858 32 100.0 36 ................................ CCAGTCATGCATTGTGCCACCACATCTTGGACAAGC 2169926 32 100.0 33 ................................ AAGATCAGCAATAATAGATTCCATAGACTCCAA 2169991 32 100.0 37 ................................ ACCGTGGGGGTTGTCTCAAACATAACCACCACGGTAG 2170060 32 100.0 35 ................................ CTTCCCCAGGAACTATATGACAAGCTTCCTTTGGA 2170127 32 100.0 37 ................................ ATGCTCTATCCCTCCATACCTTTATAGCCACGTACAC 2170196 32 100.0 33 ................................ TGTGCGCCCGGATCAAAACTTATCGCAGAATAA 2170261 32 100.0 36 ................................ CTATTTTGGAGTACCGATAAGCAACATTATTGAGCA 2170329 32 100.0 36 ................................ AGCCGTTGTTGTAAGTCATTAGTCTTTTGACGCTGC 2170397 32 100.0 38 ................................ TTCGATCAGGTCTATCTACCTCTGCTGGAGGAAGGTAA 2170467 32 100.0 33 ................................ TTTGAAGTAGAATCTTTGGATGCGACGACAAAA 2170532 32 100.0 36 ................................ AATACAGAATCAATCCCGTCGAACATTTCACGCAAC 2170600 32 84.4 0 ............G......T.G.C......T. | ========== ====== ====== ====== ================================ ======================================= ================== 25 32 99.4 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GACGCTGGAGGAAACCGATCATTTCATCATCATGAAACAATTTCTGAACAACAAGGAAAAGATGATGCAGGAGCTATTCCAAGATCACTAATAAGGAATGTGTGTGGATTTTGGATGGACAAATCATGCGCTATCCTTACTCATGTACCGCTTAGGCTTTAGCTATAAGAAGGCGACCTATACGTTGGTCCAAGCAGATGCAATTGAAGTTTGTCTTTTGCCCAAACATTCACCGGATCTGCACCCCATTATTGGTTATTATGCTCATTTATGATATATGTATAAGGGAAAATAAAATGAGTATTCTGCTCTTATGGTGAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAAAACATCAAAATCAGCTTCTTCACTAGAAGTCAATGGTTGATTCAAGCTTTTTTGGCATCGTTTTTTGCTGAAATGTATGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TGCCAAGTGTAAGTAAAAAAATGGAATGCCTGTAGCCATAGCCAACTATGTAAGCTGAACTAAAAAATGTACATGGAAAACGGAATAGACGGAATGGTGCTGTACAAGCGAAGCACCATCCGTCTGCGGAGTGGCACACTAGGTAACTTTTACGAATTGCATATAGCAGATTGGGATCAAGCGCCTTTGCATTAAATTTAAAATTAGGATTCTGACAGTATTATGCTTTCAGTTCCTTTTTTTGTGCATTGCATATAGAACGCATGTTTGTATATAATTAATGCAGAAGGGTTATCTACGTGCTCTACGATGTCAAATGAAAGCTGCTAAGACTACTTTTCCATTTTTCAAGAAGCAATTATATTTCCATATAACGGCTTCAGATGATTGGTAATGTTTTAATGTAATTTATGATTGTTATTTGCTCGTGGGTCTATTAATATAGTGAAGAGTTTTGAACTAATAGTTGCAAAATAAGATTTTCATATGCGAAATAAATA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3984629-3985065 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3984629 32 100.0 34 ................................ CAGCGAGACGACCAGTTTTAAGCAGCTAAATGAT 3984695 32 100.0 38 ................................ ATTGATTTAGAACCCGCAGAGCCGGAGATTCCAGTAAC 3984765 32 100.0 34 ................................ GCCTTCCTACGCCAAATGACTGGAGGGATACACC 3984831 32 100.0 36 ................................ AGATGAAGCGACCTCTACGGCCTTTTGAATACTCGT 3984899 32 100.0 33 ................................ AAAAATTCCGTCAAGATTGTAGCAGACCTCATA 3984964 32 100.0 38 ................................ ACATACCCATCAATACTCCTTGATGGATTCGAAGCACC 3985034 32 87.5 0 ...................T.....A....GC | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 98.2 36 GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Left flank : ACGACGGAGAAATCCGAAAGTTTAAAGCAGATTACTATCCCGGTCGAGTTCCCAGAAGGGGGGCAGCCATTGGCTAATGGACCAGGTCAACCCGGGCAGGTAGCTGATTTGGTAACGTTCCTGGCTTCCGATCATTCGCGTCATATTACTGGTGCCCAAATTGTGATTGATGGGGCAGAGTCCTTGTTGTTTTAGCACTAGAGCATTCTTAGTGTTAGAAAAATGATGGGTGGTGTTCGAGTGTATTGTCTTGGCTATGATGCTTATTTATGGTATATGTATAAGGGGAAATAAAACGAATATTCTGCTCTTATGTTGAGGTGCGAATGTGAAGCTCCCATAAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAAAGCATTCAAATCAGCTTTCTTCGGTAGAAGTCAATGGTTGATTCAAGCTTTTTTGGCATCGATTTTTGCTAAAATGTATGGTATTGATATCATTAGAGTATGAATTGTTGCATTTTCGCT # Right flank : CGACTGAATCATATGCTCAAGAAGTAACTCAAACTCCTTAGAAGGAGATCAGTTCATACTAGGCATCTTGACGATTAAAAGCCGAACATCCCGCAAACCTCTATTTCAGAGCTGTGTGGGATGTTCTATGAGTTTACTAGTTCATTATTGTTTTTGCTTACTGATCCATTCGGTCAGACCGTATAGCTTGTACCACAGAGCTTCATGGGTACTGAAGTAGTTAACAGCATCATTCTGATCGCCGGGAGTCATGTAATCTGGTCTTGTTGCTGGCATAGATTTTTTACCCAGGAGAAATGCAAGGACATGTTGATTCTGTTTGCGTGCGCGTTTGTAGAGGAGAGGTAATCTGGCACTATATCCACTTTTTAGGTATTCCAGAACCAATTGATTATATTGAAATTCAGTTGATATTTCGTTTTCATATGACTTAAAGATCCGTTCTGCCTGATCCAGACGCTCCAGCTCCAAATAACATTTGAGCAAGCTGTACCGAATCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3997390-3998573 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 3997390 33 100.0 34 ................................. CACTCAAAAAGGCCGTTTCGATTTACTTTGATCA 3997457 33 100.0 36 ................................. CAAAATTACAATCCCTGCCTTAGATCAAGGCACAAA 3997526 33 100.0 34 ................................. GCCAATGGTAGCCTTCAACTCGTTTTCAAGCCGC 3997593 33 100.0 33 ................................. TCCAAAATTAGGAGAGTATTTGAACTTAGTTAA 3997659 33 100.0 33 ................................. ACATGTGGCATCCAAATCGTCTGCCAACTTTCG 3997725 33 100.0 35 ................................. AGCCGAAGAGAACAGAGCGGTGAACGTTATTTGCC 3997793 33 100.0 36 ................................. AGTCAAACTTGAGCTTAAATAAAAATAAGCCCCGGA 3997862 33 100.0 41 ................................. AGTCCAGACAATCTTCGAAAACAATATCAAGCTATTTTAAC 3997936 33 100.0 34 ................................. AAATGGTGGTGGATATCCGTGGGCGTACCAAGTG 3998003 33 100.0 34 ................................. TTTAATTACATATTAACCCAAGTACTATCGTTCG 3998070 33 100.0 34 ................................. TGCAGTTCATAGCCCCAGGTAAAACGGATATGTT 3998137 33 100.0 36 ................................. GCTTCGGAATCGGTCAAACGCCAGTGTGGGCCAAGC 3998206 33 100.0 33 ................................. CGCCCATGCCGCTTTTACCTGTGTTATTGATGA 3998272 33 100.0 33 ................................. CGGTTCAAAGACCGGAGTACAGGACGTTATGGA 3998338 33 100.0 34 ................................. TTCAAGGATTTTTTGAACTTGGCGGCGAACCTCG 3998405 33 100.0 33 ................................. GGAAGTGAATTTAGAAGATGTGTCCGGGGTTTC 3998471 33 100.0 37 ................................. AAGTGGAAAAAGGAAAACTCCACTCGAAGCATGCTGA 3998541 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ========================================= ================== 18 33 100.0 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CTCCATTTTTGTGGAAGTAGGTGTTATCTTGTTAATTCTGATTACTTATGATGTAAGTACAGTAGACAGAGAAGGCAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGTGTGGATCACGGGCAAAGGGTGCAAAATTCCGTGTTTGAGTGTATTTTGGATTCGACCCAGTTTCGCCGTTTGAAGTATGAATTAGAAGAATTGATAGACAAAAAAGAAGACAGCCTGCGTTTCTACAATTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATGGGAGCCAAAGAAGCTTACGATATGGAAAGCCCACTGATTTTGTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAAAGGATTAGTATCCACTTTCTATAGTAGAAGTCAAGGATGGATTCAAGCTTTTTTAGCATCGTTTTTTGCGAAAATGTATGGAATTGATATCATTAGGGTATCAATTTCTGCATTTTCGCT # Right flank : TCTAGGTCTGATAGACTAAAGGAAAAAAGAATAGGTCGCACTCTGTGTGGAGTGCGACCTTTCCATCACACACTGCGTCCATTTTAAACAAACTAGAAACCCACGAAAATCCTCTATCTACTCAAAATATATTTTACAAATACCTTTATGATTCTTAAAAATATAAAGGTATTTACTGATCAATGTAGAATATATACCGCTGTACTCCAATTCAAGAGAGGGGCAGATGAGGATGATAAGGCGGGTTGCAGCAAATGGAATCAAGAAAGGTTTTCTAATAACGTTAGTATTATTATTAATGATTGCAGGTTCTGCATTGGGAATGAGTGACGCTTCCGCTGCACTATCTGAGCAGAAGGGTAAGCAGGATGCGCCCGCTTTTTCCGAGGTATCCGTTCATGATCCTTCCATCGTCAAAGACGGCGATACTTATTATGTGTTTGGTTCACATATATCGGCGGCGAAGAGCAAGGACCTTAAAAGCTGGACTTCTTTTGCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 7 4001734-4002645 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4001734 32 100.0 35 ................................ AGCACGGAAATGTCAGGCAGCGCGTCCGGATGGGC 4001801 32 100.0 37 ................................ AGTGTTTATAGTACCTATTATATGCAAATCTTCATTA 4001870 32 100.0 35 ................................ TCCACCTTATCGTCCATTGGACCACCAGTTTCCTC 4001937 32 100.0 35 ................................ TCTCCATCCCATACAATGCACTGCCAACCATTCAT 4002004 32 100.0 37 ................................ TTATCCAACAGGAACAGCAACAGAAAGCAATCATTGA 4002073 32 100.0 34 ................................ AGCTCCCTAAGTGCTTTGGTGAGCCTGTATGCTT 4002139 32 100.0 33 ................................ GTCGAATCTAACCTGCTGACGTTTACGTTTTAG 4002204 32 100.0 38 ................................ AAGAGGAGCGTTTGTCCGAAGAAATGCTAAAAAATGTA 4002274 32 96.9 34 ...................T............ CCGATCCTGGCGGCTGCTCTCACGGGCGAGCGTT 4002340 32 100.0 38 ................................ TCTTGTTTGTCTTGTCCAGCATCAACGAGAGAGTTGAG 4002410 32 100.0 35 ................................ ATCGACTTGTTGATATCATCTATTGCTGTGGAGAG 4002477 32 100.0 36 ................................ CCCGAATTGTCTCGCGGATCAAAAAAACGATTCAAA 4002545 32 100.0 37 ................................ GTTGCCAACATTTGTTGATCCGTTTGCCCGGTGGCCA 4002614 32 96.9 0 ........................G....... | ========== ====== ====== ====== ================================ ====================================== ================== 14 32 99.6 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AACGTTCAGCTTGGGTGTTAACTGGTGGGACCCTGCCTTTAAAGGCGCTATCGATGAGCTAAGTATATTCAAAGGGGCGCTTCCTCCATCACAGGTGGCAGAGCTGGCCAAGGTGAAATGAATCTAGGCTGATAGATATGAAAGGTTGAGAAGAAGCATCTCCAGTGAGAGATTACTGTATATGCTTCTTTTTTTGTGGTAGCATAACGAGAGCATGAGCTACAAAGCATGAAATCATTTCTCTATAAGTGAGTTATCCAATTCATGCTATACGCACTTGTTGCCAAGCAAAAAGAATTACTTGAAGCGAGTTTTTTCAAGTGCGAATGTGAAGCTCACATGAATTCCCTGGGTCCTTCGCACCTCAGATTTTGTCGAAATCCTGTCGAATGTGAATGATTTGTGAATGCATCATAAAGGGTATATGCTCTTTTTGATGCCGTACGCTCAAAATTACGCTAAAATGAACTGAAACGGGTTTGTTTTGACCCATTTTCGCT # Right flank : TGCACTCAACAGCACTTTCGAAACATCCATCAGCGAGGTTATCCCATAAGTCAATTTTGGATTTTTAGTCCCCTATTTTGTATATGAATTTGGCTACAAAAACGACCTCATCCTCCACTTCACCATGGATTTTGAGGTCATTTTTGGGACTGTCCCATCGGAACCTTCCTCTCTTTTAGACAAACAAGAACCAACGTATTCCTTCTATTTTACTTAAATTATATTTTAATATTTTTTTTATAATTCTTGTAATATAAATATATTTACTTTGGAATATATCGCTGTACTCCAACCCAAGAGAGGGGTAGATGAGAATGATAATACTATAAAGGGAATAAGGGCATCGTTAGTTATTATGTGTGTGTTTCACATATCTTGGTGGCAAAGAGCAGGGATTTTAAAAACGGAACCCATTTTTGCAAACAATTACATAACTTCTGAAACACGCTTCTGGAGATTTCGCCCAAATAACAAATTCCCCTGGTAATCTCTTGTTTTGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 4011196-4012026 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4011196 32 100.0 35 ................................ ATCCGGAAAATAGGAAATTGCAAAAGGGATTGAAT 4011263 32 100.0 35 ................................ CTGTTGTTGCACATTGCAACCAGCTAGTAAAGCCG 4011330 32 100.0 34 ................................ ATTTGAGAGAACGACAAGAGTTTAGCTATCAGAC 4011396 32 100.0 38 ................................ CCTACGCTCCCACCACCTGCCCATTCTGGCAAGTCAAA 4011466 32 100.0 35 ................................ GGGAGCTGGTACGGCCTCTATCCCTTTTAGGGTTG 4011533 32 100.0 32 ................................ ATCCAGGTCGGAAGGGAGTTGCAGAACCATTG 4011597 32 100.0 37 ................................ CGTGATATGTGGCGGCAAGGGTACAGTGTGGAAGAGA 4011666 32 100.0 31 ................................ AACAAGGAGCCTGGCTTAACACGAATGTAAA 4011729 32 100.0 35 ................................ AAACGCTATTGCCCGGCCCCGGTATGATCCGTCAT 4011796 32 100.0 38 ................................ ATCGTAGGCCGTGACGGTCATCTGACCCATGCTGTCGA 4011866 32 100.0 34 ................................ AATCTGAACCTCTGTTTTTACATAGGATTTTTCT 4011932 32 93.8 32 ......................A..C...... TAATTGTGGGTGAATATCTATCGACTCTGCAA 4011996 30 84.4 0 ........-...A.....A...-........A | A [4012010] ========== ====== ====== ====== ================================ ====================================== ================== 13 32 98.3 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CAGTGTGCACAGCGCTCAAACAGGATGTGCTTACACCGCATCACCAGGATTATAACGGCATTATTGTAGAGTCTTATCGTAAGGACATTGAATACGAGGCTCCACGTGACGATGATTCTCCTGTTCCTATTCCATTCCTTTCAGCGTCGGCTCATTTCCATATCGTATTAACCTGTGAGGGAGAGCAGGAACAAGCTATGAAATGGCTAAGCTTGGCCAAAGCAATCCTGCTCGGAGCGCTAAGAGATGAAGGCATTGGCGGGAAGACCAACGCAGGATATGGAAGGTTGTTAGAGGTTTAATTGGACAGTGAAGTGAAGGTGCGAATGTAAAGCTCCCATGAATTCCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTATTGGAATCGCTATCTCTCCATAAAAGTCAATAGTTGATCCAAGCTTATTGGGCATCAGTTTTTGCATCAATGTGCGGAATTGATATCATTAGGGTATCAATTACCTCATTTTCGCT # Right flank : AGAGGCCGTCGCCGCATTACTTGGTCGCAAGTGATAATGAATTAGTTCCGCGAAGGGGGGAGATGGACATTTTATGCGGTTTGGTGGGAACGGCAGAGGTTCAGTACAATTCCATTTTGGATAAACTGATCTTAAAGCAAAAAAAGATTTTTATTTCCGTGGACGCCATAAGTGCCCGCTGTTAAATCATGCGGATGCTTTGTCATTTTTTGCCTATACACTGTTGTCCAACGATATGAAGTCGGCTCTGGAGGCTTATGGAAAGCCCACTCATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTATTAGATTATCTATCTTTCCGTAAAAGTCAATAGTTAATCCAAGCTTATTGGGCATCAGTTTTTGCGACAATGTGTGAAATTGATGTCACTAGGGTATGAATTACTGCATTTTCGCTGTCGCACTCCATATGAGTGCGTGGATTGAAATAGCTTT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 4012488-4013653 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4012488 32 100.0 36 ................................ AGCTTTTTTTGCTATGATTTGGGCCTCTTGATTTTC 4012556 32 100.0 34 ................................ AGCTTTTCGAGCATAGCCTTCAGGTAATCAAGTA 4012622 32 100.0 37 ................................ AACCAACTTTTTACGGTACTTATTGAGCGTATCTCGG 4012691 32 100.0 36 ................................ TGATATTTTGCCTATTAAAGTCAATCAGGTTTTAGG 4012759 32 100.0 34 ................................ TGTTGGGTAGGGTAAGAGGCTGTTATACCTCAAA 4012825 32 100.0 35 ................................ TCTAATACACCACCCACATTCATACCATTTTTATA 4012892 32 100.0 35 ................................ CGGAAAAATCGCAGGATGCTCAAAGGTGATTTTAT 4012959 32 100.0 34 ................................ GCGAAGTAACAAGCACCATCTTTTCGTCTGATGG 4013025 32 100.0 35 ................................ CTTTTGCATATCACGAAAATTGAAAGTGCTCTTAG 4013092 32 100.0 33 ................................ CTTTGACAGCTTCGCACAGCACTTCGCCTTTCG 4013157 32 100.0 34 ................................ CGCGGAACAGGTCTTGAGAGCAATGAGTATAGAC 4013223 32 100.0 34 ................................ ATTGGAAATTCGCGAAATACTTTGATCTCTTTGC 4013289 32 100.0 34 ................................ CAGATACTGCACAAGGCATCGTAGATGATTATAT 4013355 32 100.0 36 ................................ TGTTTGAAATTTGACATGATTTATCGTCTCCTTAAA 4013423 32 100.0 35 ................................ CTGATTTTATTGATAGTAGCTTGATCCACGATCTA 4013490 32 100.0 35 ................................ CTGATTTTATTGATAGTAGCTTGATCCACGATCTA 4013557 32 100.0 34 ................................ TAGAAAGTTTAGAGGAGTACGATTTGCCCTCGGA 4013623 31 90.6 0 .........T...............-...T.. | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.5 35 GTCGCACTCCATATGAGTGCGTGGATTGAAAT # Left flank : CTCTGCAAGTCGCACTTATATAGAGTACGTGATTGAAAAGAGGCCGTCGCCGCATTACTTGGTCGCAAGTGATAATGAATTAGTTCCGCGAAGGGGGGAGATGGACATTTTATGCGGTTTGGTGGGAACGGCAGAGGTTCAGTACAATTCCATTTTGGATAAACTGATCTTAAAGCAAAAAAAGATTTTTATTTCCGTGGACGCCATAAGTGCCCGCTGTTAAATCATGCGGATGCTTTGTCATTTTTTGCCTATACACTGTTGTCCAACGATATGAAGTCGGCTCTGGAGGCTTATGGAAAGCCCACTCATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTATTAGATTATCTATCTTTCCGTAAAAGTCAATAGTTAATCCAAGCTTATTGGGCATCAGTTTTTGCGACAATGTGTGAAATTGATGTCACTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TGAAAAAAGACGGTTTGTCCGTAAGCTTTGTCGTGTAATGGAAGGTATAAATTACAACTGAGTTAATTTTTTTAACGGATTCCTCATTCGACAAATTCCTCCTTACTTTTATGCAACAATTACTTAATATTTACAGTGTTTGAAGTATAAATTAAGGGGGGAGTATTTTTATGAGGATTTCCATGAGAATGTTAGTTTCTTTTGTGGCATCGGTATTACTCTGCTCAACTGCTAGTAGCGACCTGACCCTGTCACCTGTATGCCATGAGTAAGTTTCTAAAGCGTTATGCAGCGATTTTGTTGGGGTATGCAATAGGAATAGGGTTATTTTACGCTTTAGGATATAAGATGAGTGCTATGGGTATCTATGTAATTTTGGCTGGAACAGTGATTGGAGAAATAATCAATTTCGCATTATCAAAGCGAGAGAAATAAACCTATTTACCCCTTGATTGATCAAAATCAGGGGATTTTTTATTAAATTAAAAAGGACCAATCGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 5628621-5627974 **** Predicted by CRISPRDetect 2.4 *** >NC_016641.1 Paenibacillus terrae HPL-003, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5628620 32 100.0 37 ................................ TTAACTGAGTTGGTCGCTCTCAGAAATAGGATTCCGA 5628551 32 100.0 38 ................................ ACTGGAGCACTCAGCGTGACTTGCTCCTGAGGTACGTA 5628481 32 100.0 34 ................................ CGATGTAACCATGTAGCTCCCGATTGAGCCGGAA 5628415 32 100.0 37 ................................ TGAGTCTATCAGGACCATCTACATTCGCAATTGCCGC 5628346 32 100.0 38 ................................ TCGAACATGAACACGCGTGATATCTCGCCATCGACCGC 5628276 32 100.0 38 ................................ ATATCCATGCCACCCAAACGTTCGATCTTCTCCCGCAT 5628206 32 100.0 37 ................................ CGTTACTATACTTTCCTAAACCCAAAAAACTGGATTC 5628137 32 100.0 33 ................................ AGGCAGAAAAGCGGCTGTACACTGTACAGCAAT 5628072 32 100.0 36 ................................ TAACAAAGTGTTGGCCGTGATCGGTGTTGCTCCTGC 5628004 31 81.2 0 .....................ATT-.....GC | ========== ====== ====== ====== ================================ ====================================== ================== 10 32 98.1 37 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGTTTTTTCCTCTTGTGCCAACGGAAGCATTCCATCATTCACATAGGTAACTAAATCTTTTTTTACCGGATCGGTAGAGCAGGCTGCCAAAATGGAAAAGCAACATAATACTAACATAAATAAGCTAATTTTTTTCATCTGTATTCCCCTTTTATGTATGTTATGGGTAATTCGATGTGATTTATGGTCAAAAGGAACTACCTATATGATTTATTATATCGTATAAATAAGAGAATGGTAGGGTTTTTATGGTAAAATAGTGTCGAAACTAAGTTGATTGATCTGCTTTTAAAAATTGGGGGTAATAGGGAAGTAAACAGGTGCGAACCCCAAGCGCACATAAAAATCTCGGGTCCTTCGCACCTCGAAACTTGTCGAAAAGTATTGGACTGGCTATCTATCCGTAAAAGTCAATAGTTGATCTAAGCTTATTGGGCATCAGTTTTTACGGTAATGTGTGGAATTAATATCGTTAAGGTATGAATTACTGTATTTTCGCT # Right flank : ACAGTGCGCTCAAGTTTTTTAGCTATGAAACTCAAAGAAGGCACCCTTTTAATTAGAGGAGCCTTTTTCCTCGTGATTTTTAGGATAGAAAAGTAGAGAGGGAGAAAAGTGTAGGAGGCGAGTACGCATGGTTCCGAAAACGGTGACTGGATATCTGAGATTCCAAATAAAAAAAATTGAAACAGTATCTTCCATTGGAGCCAGAATTGATTTATGATAGAAATAGACATCCTAGAATTTTCCTGTGTTTATATGGAGAATAGCAGAATTTCTTTAACACACATTTGAGAGGAGACTTCAGTATGAAAAGGTTAAAAAAGGCAATTTCAGTTACACTAAGCTCAATGCTCCTGCTTTCTTTTGGGATGACTGCGAACGCGAGTCAAAGCACAGAGGGTAAAACGGATCAAGCGATTAAAGCGGAGTCCAATGTTCAGCTAACAACTGAAAATGAAAGCGTCATTAAAGATTTAACACGGGCAGACAAGCCCGCAAGCATT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //