Array 1 313031-313418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026861.1 Pasteurella multocida strain 3361 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 313031 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 313091 28 100.0 32 ............................ TTTTTAGTCTTAGCTTTCTTTAGTTTCGAGAA 313151 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 313211 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 313271 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 313331 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 313391 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1529359-1529092 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026861.1 Pasteurella multocida strain 3361 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1529358 28 96.4 32 .............C.............. AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1529298 28 96.4 32 ..............C............. GATTATTTTAAGCAACGGAGCGGAATTACACT 1529238 28 96.4 32 .................T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1529178 28 100.0 32 ............................ TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1529118 27 82.1 0 ............A.......T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : TTGTTAACTGCCGTATAGGCAGCTTAGAAAAAAAGCATTCTGTTTACGCGTAAAAGGATCAAGTTAACTGCCGTGTAGGCAGCTTAGAAAAGCTTTAAGCTCTGCAAATGCCGAACTCATACGTTAACTGCCGTGTAGGCAGCTTAGAAAGATTATTTTAAGCAACGGAGCGGAATTACACTGTTAACTGCCGTGTAGGTAGCTTAGAAAGTCATCTTCCAATTCTTCTGTTTTCTGCTCTTGTTAACTGCCGTGTAGGCAGCTTAGAAATAAAGCGATCTTGGCTCGATTATCAGATTGGTGTTAACTGCCGTATAGGCAGCTTAGAAANNNNNNNNNNNNNTTAACGATAAGAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGC # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1530093-1529589 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026861.1 Pasteurella multocida strain 3361 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================== ================== 1530092 28 100.0 32 ............................ TTGTGTTGTTGTTGTTGTTAATCTTATGATAA 1530032 28 100.0 88 ............................ TTGTGTTGTTGTTGTTGTTAATCTTATTATAAGTTAACTGCCGGGCAGCTTAGAAAACTTGTCCGTCCGCCTCATTCTCTGGTTTCAT 1529916 28 100.0 32 ............................ TAATGGGGATTTAGGACATCATTTTAAAAGTT 1529856 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1529796 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1529736 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1529676 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1529616 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ======================================================================================== ================== 8 28 97.8 40 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TAAAGCGATCTTGGCTCGATTATCAGATTGGTGTTAACTGCCGTATAGGCAGCTTAGAAANNNNNNNNNNNNNTTAACGATAAGAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCGTTAACTGCCGTGCAGGCAGCTTAGAAAAGCTTTAAGCTCTGCAAATGCCGAACTCATACGTTAACTGCCGTGTCGGCAGCTTAGAAAGATTATTTTAAGCAACGGAGCGGAATTACACTGTTAACTGCCGTGTAGGTAGCTTAGAAAGTCATCTTCCAATTCTTCTGTTTTCTGCTCTTGTTAACTGCCGTGTAGGCAGCTTAGAAATAAAGCGATCTTGGCTCGATTATCAGATTGGTGTTAACTGCCGTATAGGCAGTTTCAATTGA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.66, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2311828-2312817 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026861.1 Pasteurella multocida strain 3361 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2311828 28 100.0 32 ............................ TTTTTAGTCTTAGCTTTCTTTAGTTTCGAGAA 2311888 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 2311948 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 2312008 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 2312068 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 2312128 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 2312188 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 2312248 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 2312308 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 2312368 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 2312428 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 2312488 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 2312548 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 2312608 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 2312668 28 96.4 32 .........T.................. TTTAAGCTACGTTTATCCGCAAGATTCACTAC 2312728 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 2312788 27 85.7 0 ..............-....C..G.C... | C,AG [2312805,2312810] ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : GCAAAATATGCAGAAATTCTAACTGAAACCTACTTTTATTTAGCAAAACTAAAACTCAATTCGGGTCAAATTAATGAGGCGGAAACGCTATTTAAACTGGCCATCGCAAACCAAGTGTATAACTTCGTTGAGTATCGTTTTGCGCTGTTTGAACTCTTGAAATTGAAGCAAAGTTCAAAACCATAGTGGCATGCTTTATGCCATAGGCTGTTGTAAAACGTGAAAACGCGCAACATTGATTACACTGGCTCACCAGCATAGTGAGCATTTCTTTTTTATATTCGAGTACTTTAATGACTGAAACAACAATGACTTTCAATGATTTAGGCTTGCCTGAATTTCTTCTTAACGCCGTCTCTGACTTAGGCTTTGAAACCCCTTCTCCAATTCAACAAAGTTGTATCCCAAACCTGTTAAATGGGCATGATGTGCTAGGTATGGCACAAACTGGAAGTGGTAAAACCGCAAGTATGAAGAAAGAATATAACAAAATTCATTTA # Right flank : ACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAGTAGGGCTACACACGTGCTACAATGGTGCATACAGAGGGCAGCGAGAGTGCGAGCTTGAGCGAATCTCAGAAAGTGCATCTAAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGCAAATCAGAATGTTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGTACCAGAAGTAGATAGCTTAACCTTCGGGGGGGCGTTTACCACGGTATGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTAAAATGGAACGACTGCAAGTGTTCACACAGATTGTTTGGTAGATTGTGTCAATGAAGAGACAAAAAACCGAAATCCTTTTGGGTCTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //