Array 1 147053-146761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAQQ01000026.1 Corynebacterium diphtheriae bv. gravis str. ISS 4749 contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 147052 36 100.0 28 .................................... AAAGACGCCCTTCTCACATGGCACCAGC 146988 36 100.0 28 .................................... TGAACAAAATGTCCCAGCCGAAAGGCCA 146924 36 100.0 28 .................................... TAATCGCTTGAGTCAGGACTGGGGCGCA 146860 36 100.0 28 .................................... CACCATCACCGATGTAGCGGTCCAATTC 146796 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 5 36 100.0 28 GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : TGGATAACAGGCGATAGCCGAAAAACA # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 506-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAQQ01000033.1 Corynebacterium diphtheriae bv. gravis str. ISS 4749 contig33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 505 36 100.0 28 .................................... CAGCGGGGCATGAACACCCAGCAGCTGG 441 36 100.0 28 .................................... CACCGCTATGCCAGCGTAGCCTACGAGG 377 36 100.0 28 .................................... TCTTACCGAGACACTAGAGGACGGCTCC 313 36 100.0 28 .................................... ATCACGAACTGCGGCCGGTCAGCCACCG 249 36 100.0 28 .................................... CGGCGGCGGTGGATACCTCGCGAGACGT 185 36 100.0 28 .................................... TGGCAAGAAAGCTCGGCGACACTGCATG 121 36 100.0 28 .................................... CCCTTGAGAACCGGCTTGATCTCGCGTG 57 36 100.0 0 .................................... | G [50] ========== ====== ====== ====== ==================================== ============================ ================== 8 36 100.0 28 GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : GAGTCGAACAGGGAGTGGCAGAACCGC # Right flank : CTATGCCCATCTGACCTGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [15.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //