Array 1 25458-23166 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNMR01000310.1 Neisseria meningitidis strain S00-1235 12-014_contig1535, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 25457 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 25391 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 25325 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 25259 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 25193 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 25115 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 25049 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 24983 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 24917 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 24851 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 24785 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 24719 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 24653 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24587 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 24521 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 24455 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 24389 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 24323 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 24257 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 24191 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 24125 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 24059 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 23993 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 23927 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 23861 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 23795 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 23729 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 23663 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 23597 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 23531 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 23465 36 100.0 30 .................................... AGGCACTCGGCGGCGGATTGAAACGGGATA 23399 36 100.0 30 .................................... CAGCTTATTTGATCACACCAACAACGGTAT 23333 36 100.0 30 .................................... GTTACACAAGTCCACCAAAGACCAGCCGAA 23267 36 100.0 30 .................................... GCTTCAGCGCGCATCCATTCCGCCGGTGAG 23201 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 35 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : AAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //