Array 1 1744-916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022723.1 Bifidobacterium bifidum strain S6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1743 36 97.2 30 T................................... ATATCTAACCACGAATATAGTTAGACATGA 1677 36 100.0 30 .................................... CCAGCAGGCCAAGTTAAGCGGCGTGAGTTT 1611 36 100.0 31 .................................... AACCATAGGGGGTTACTGTGCCACAATAAAA 1544 36 100.0 30 .................................... CAAAACACAACCGCGCAGACGTTCCAATGT 1478 36 100.0 30 .................................... CGTGTTGGTTTGACATGTGGTGTGTGTTGT 1412 36 100.0 30 .................................... GGTACATACGGAATGGGTCAGCAAGCATCA 1346 36 100.0 28 .................................... TGTTGTTCCTTTCGTGGGGGGGGGGATG 1282 36 100.0 30 .................................... CAATATCACCACTGACCGGAGTCAACGCAA 1216 36 100.0 30 .................................... ACAGGTGCACGTGGTTCCGCACGTCTGGGA 1150 36 100.0 30 .................................... TACGGGCATGTGACGTAGTAGGTGCCGACG 1084 36 100.0 30 .................................... CATCTACACACGAGCACTCGGCAGCGAGGC 1018 36 100.0 30 .................................... ACCAGAGCGGACATGTGCGGAGCAGACCTG 952 36 94.4 0 ..................................TA | T [919] ========== ====== ====== ====== ==================================== =============================== ================== 13 36 99.4 30 GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Left flank : TGGGAAGCTTCCCGGACGGGAACGGCGCGCTCATGCTCGTCTGTGCGCGCATCAGGTACGTCACCGCGAACGAATGGTCCAACCGGCGTTACCTCGACATGTCCCGGCTCGGTGACAATCTGCAGGAAGCGAACCGGTCATCGCGCCATGGGCGGGCATGATCCAAAGTGCGCAACCTTTCGGGCACTACCTCCCAAAACCTCCACTGAACGGAAAAATCAAGCCACAACAGACACTGTCAAACAGGCTTACACACCTTGAAGCATGAAAAAAGCCATCAGGGACTTCCTGATGGCTGGTCATTTGCGGTATGCGCTCCACTTATTCCTTGGGCATCGGCCTGAGGCCGCCAACGACAGCGCTCTTCACATAGGATGTCACTATAACAGTCCGAATATTGTGCATCAATCGTTTCCCATATGTCACCAGAATCAAAAGCACACCCCGGAAGCTATCCAGAAGACAGCAACAGAGGTGCCCCTAACACTATTGCGCATCAC # Right flank : TTTGACTCGTTGGGGTCCGGGGTTATTGCGTTTGGGGGCCATTATGAGTTTTGGTGGTTATTGCGTTTCGAGGCCGGGGTTATTGCGTTTGGGAGCCGTGGTTGGTTAGGCTCCTTTCACCATGCGAGGGACGTGTGGTGAAAGGAGTTACCAGCAATGGTACGAAAAATACAGGCGAAACTGGTGCTGCGTTTGCATGCCCAGGGTTTGTCGGGGCGTGCGATCGCGAGGTCGCAGGGCATGTCGCGCCGGAGCGTTTCCGATGTGCTCGATGCGGCGAGGGCCGTCGGCGTCGGCTGGGATGATGTCACCGGCAAGACCGACGGCGAGGTGTACGCCCTGTTGTTTCCCGGTCGGGGTGAGCGCGAAAGCGTGTACGAGCAGCCCGACTGGGCCAGGGTTCATCGCGAGCTGGCGCGTGTGGGCGTGACGTTGAGGATCCTGCACGGCGAATACGTGGACGGATGCCGACGGACCGGGAAACCCCATATGGGTTACGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 2305825-2309622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022723.1 Bifidobacterium bifidum strain S6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2305825 36 100.0 30 .................................... ACGCCGCTTGTGCGACCGACTGATCTTCGA 2305891 36 100.0 30 .................................... ACGCCCGAAAGCCCAAAACAAGCCATCAGG 2305957 36 100.0 30 .................................... TTATTCAGGTGCCGAGCCTTGGTATTCCGG 2306023 36 100.0 30 .................................... TCCATTCGTCGAGTCGGGTCTCTACATCTC 2306089 36 100.0 30 .................................... ATCGTTGAAAATGTATAATATCGGATATGC 2306155 36 100.0 30 .................................... ACTATTTTTTTACGGTGAACGTGCAAGTCG 2306221 36 100.0 31 .................................... TACAGCGTGTGGCCGTACACGCCCGCAATAC 2306288 36 100.0 30 .................................... ACTATTTTTTTACGGTGAACGTGCAAGTCG 2306354 36 100.0 31 .................................... TACAGCGTGTGGCCGTACACGCCCGCAATAC 2306421 36 100.0 30 .................................... CGATGTCGCCAAACTGTACGTAGCGCCTTA 2306487 36 100.0 30 .................................... TACCGGTTTGCGGGTCGGTGACGCGCGGTG 2306553 36 100.0 30 .................................... ACCCGATGAACCGGCAATATCTCAATGATT 2306619 36 100.0 30 .................................... TTGAAAATATTAAAAGAGCGTCGCCGTTCC 2306685 36 100.0 30 .................................... CGTACGTGGCGGAGTTCGGCGCGACATCAA 2306751 36 100.0 30 .................................... GTCCGCCAGAATGGTGGTGTACAATAGTTT 2306817 36 100.0 30 .................................... CGGCGGTGGAGCAACCCGCTCAGCGTTTTT 2306883 36 100.0 30 .................................... CGGTGTTTTTTGATGAAACCTGTTTTGTCG 2306949 36 100.0 30 .................................... TCGCATAGGCGTTAGCTTGCGAAGTGGCCG 2307015 36 100.0 30 .................................... GTAGATGGATTGCGTAAATGCCGCATAAAT 2307081 36 100.0 30 .................................... CACGCCCACGCCAAGCCAGCCGTCAACGGC 2307147 36 100.0 30 .................................... AGTATAACGCACTCAACGTCACCGATATTC 2307213 36 100.0 30 .................................... ACAGCGTCAACGCATCCAACGGCAACGCTT 2307279 36 100.0 30 .................................... CTGCTGGGCTCCCGTTACGGTGAGGTGATG 2307345 36 100.0 30 .................................... TGTGTATGAGACGGCAAGATGGACTGAGGG 2307411 36 100.0 30 .................................... CATGCCGAAGTTCTGTAGCTGGCTGCCCAC 2307477 36 100.0 30 .................................... TACACGATGCGCACACGCGCTGGTCATGTG 2307543 36 100.0 30 .................................... TCAGCACTCTCTCGACCATCGTGAACTGAC 2307609 36 100.0 30 .................................... GCGTGATTCTAGCGGCGCTAGGGCGTGCGA 2307675 36 100.0 30 .................................... TAGTGAACATCTCTACATGGTCCCATGACT 2307741 36 100.0 30 .................................... GCGGGATTCTTCCGGCAGAATCTAATCTCT 2307807 36 100.0 30 .................................... GCTGATCCGCGACGGCGTGCTTGATTCGTT 2307873 36 100.0 30 .................................... ATGACTGTCGTGATGTGGTCGCGTCGTTCA 2307939 36 100.0 30 .................................... AGTGTCCTCCTCCCTCCGACTGTCCACACG 2308005 36 100.0 30 .................................... AGATCGACCCCGCGCAGGCCTGCGAATTGC 2308071 36 100.0 30 .................................... CTCGTTAGGGTCGTGCATGCTCTTATCCCT 2308137 36 100.0 30 .................................... GCGCGTGCTGCTCATTAGTATGCTCCTATT 2308203 36 100.0 30 .................................... TACTCAGGCCAAGACCGACTGCGTTCCCAT 2308269 36 100.0 30 .................................... GTTGGCGAGTCGTTCGGTGACCACGTCGTT 2308335 36 100.0 30 .................................... CCATCGTGCGCACGGTCGGCAGTTGGGTGA 2308401 36 100.0 30 .................................... TACCGAGGCCAAACTGACCGGCGCAGACCT 2308467 36 100.0 30 .................................... GTGCAAGCATTGCAACGCTTCGCGCCAAGA 2308533 36 100.0 30 .................................... CGCCGCCGATGGATTGTTCGAGGTTCGCGG 2308599 36 100.0 30 .................................... AAGCAAACGGCTCCATCGTCATCTTATGTA 2308665 36 100.0 28 .................................... AAGGTAGCCGGTTGGCTACTCTCTCTCA 2308729 36 100.0 30 .................................... CGAGAAGGCCGACGACGCCTTGCCGCGCAT 2308795 36 100.0 30 .................................... GTGAGGGTGTATCATGCCTAGTCGCAGTCG 2308861 36 100.0 30 .................................... CTTGGAACGCGGTCAAGGACGGCGTATCGT 2308927 36 100.0 30 .................................... TCCGCCGGGGCCAACGTGATGCCGCTTAAT 2308993 36 100.0 30 .................................... CCGCGTCGCTCATGTCCGCGTCGCTCATGT 2309059 36 100.0 30 .................................... CGCGTTGATCTTCGGGGACGAGAAGTGGAT 2309125 36 100.0 30 .................................... TGCTGTCAGCTTGTGCATCGGCTTGTGCAT 2309191 36 100.0 30 .................................... CGCGCTGCTGAGCGAGTTGCAGCAGCGCGC 2309257 36 100.0 30 .................................... CTTATGCAAGCGCGCTACAGTCAGCAACTC 2309323 36 100.0 30 .................................... TCCAGCTCTGTTCGACGCCGTCGATGCGTA 2309389 36 100.0 30 .................................... CACGATGTATCACAATCACTGGGGCGTTTA 2309455 36 100.0 30 .................................... CGGCTTTGTCGCTGGTGCGGGCTTTTGTGG 2309521 36 100.0 30 .................................... CGTCTTTAGCCGCGGAACCGGTGGAAACGC 2309587 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 58 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : ATTGCGCGGATGAAGTGGATTATAATGCTTTGTTCCAGAAGCTTGCTGTCAAGAAAATAATCGAAGGATTTACGCCGGAGCAAATCAGTAGATTATTGTCTTTGCAGGCTGAGTTAAAAACAATTATTCAAGATGAGATATGGGGTCAAAATCTACCTCTGACTATTCCCTGCGATTTGGATTTGAAAGCAGCAATTGCAATGGCCAAACCTCGGATTGACACGAGTTCTTTGGGATCCTTGTATGATAAAATTTCGACGGCAGTAGATACTGCCGGTGCTCTTGCCGAGAGCAGGATGCTGGTGACGCTTCATACAACTCAATACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATCG # Right flank : CTGCTTGACGGGTACAACGTGATAGGCGTGTGTTTCAGATGTGAATATTCGTAGCTTTTGAGGCCACTGGTTATTGTGTTTGGAGGCCGGGGTTATGGTGCGGGGAGGCCGGTGGCGGACTGGTTGGGGGCCACCGGCCTTTTGGGTTAGTTGTCGAGCATGGTTTGTCCGTGGCGTTGTCTCATGTTGTATTCGCCGGTATTAATCCAGATCGTGTTGTGCACGATGCGGTCGAGGATCGCGTCGGCGATGGTGTCGCCTCCAAGCTGGCGGTGCCATTCCTTGGTCGCCAGTTGGGTGGCGAACGCGGTGCTGGCCGTGTCGTACCGGAGTTCCATGAGCTCGAGCAGGAATCGTTTGAATGGTTCGTCGGGCTTGTCGACGAGCCATTCGTCGATGGCGAGCAGGTTGTAGGTGGAGTATTTGCGCACGAGCTTGGGCACGCCTCCCGGTTTGCCGGCCGCGGCCGTCACCTGTTCGGCGAGGTCGGGCATGCGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //