Array 1 393518-391290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZGY010000023.1 Shewanella algae strain A60 A60_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 393517 29 96.6 32 .A........................... TCGATGGTGTCGGCAAATACCCACCAGGTGCC 393456 29 96.6 32 .A........................... TAACCGCAGGCGCCGGAGAGCAGCTTCCAAGC 393395 29 96.6 33 .A........................... CCTCGGGATCCCTCGGGGCTTTTCAATAACAAC 393333 29 96.6 32 .A........................... CCCCCCAATTAGGGAGGCTTGGGTGAAATTGA 393272 29 96.6 32 .A........................... CCCTCAATGATTTTAGGCTGTGCTCTGAGTTC 393211 29 100.0 32 ............................. GGCGGCGGATGTTCCACGGGGCGGCTCAGGGG 393150 29 100.0 32 ............................. GCTTTCAAGAAAGGCGGCAAGCATGAGATAGA 393089 29 100.0 32 ............................. CCAGCATCGAACAGCTCAGGACTTACCCCGGC 393028 29 100.0 32 ............................. TTCCTGCGGAGTCTCCGGCCCTACCTCCACAC 392967 29 100.0 32 ............................. CTTTTCAGGAGCGTCAGGCGGACTACTTCAAA 392906 29 100.0 32 ............................. CCTGAGCGGTACGTTATTGAGGCTTTGAAGTC 392845 29 100.0 32 ............................. CGAGGCTTTGCAGTGTTACATGGGCCAAGTGT 392784 29 100.0 32 ............................. GAACTGGCCAACCTTGGCGAGGATTATCAAGA 392723 29 100.0 33 ............................. CTTTGGCAAGTCTTGAGCGAAGGATTCCATTAC 392661 29 100.0 32 ............................. CAGGGATTGGGTTACGGTCAGAGTCGGCGCTG 392600 29 100.0 32 ............................. GAATATGAGGCCAGGATCGCCGGTATTAAAAA 392539 29 100.0 32 ............................. CACTTGAGGAACACCTGCAGTCTACAAACCAG 392478 29 100.0 32 ............................. TGACTGATAAACATGCCGAGGAACACGATGAT 392417 29 100.0 32 ............................. CCCCCGCGAACCGCTGCGACATAGGCTCCGGA 392356 29 100.0 32 ............................. TTAGGCTTAATCATCCCGGCCTTACTGAGGTA 392295 29 100.0 32 ............................. GACTAGCCCTGCATCTTGAAAACTATGGAAAT 392234 29 100.0 32 ............................. TGCGGCGGCAACATGATTTTGCGATTGGTGAA 392173 29 100.0 32 ............................. TCACCGGCATGGAACAGGCCGAGCAGATGGCC 392112 29 100.0 32 ............................. CTATGCCCGGTGTGGGCATGGTTTGCACTACA 392051 29 100.0 32 ............................. GCCCACCAATCGCGCACAGTGAACGACTTGAG 391990 29 100.0 32 ............................. CCGTCCCCTCTTTGAGGGTCAACTCTACTAGC 391929 29 100.0 32 ............................. GCCATAGAGCCTCCCTTGTCGTCGTTACGCTG 391868 29 100.0 32 ............................. TGTCCCTTGATGTTGACCCTTGGTGTCCTTTG 391807 29 100.0 32 ............................. TAATCTATCCACCGACAACTATTGAAACTGGG 391746 29 100.0 32 ............................. GTTGCTGCCCGCGCTTCCTGAACCTTCATAGT 391685 29 100.0 32 ............................. ACATCAACGGGCAGTCGATCTATATTGACGAT 391624 29 100.0 32 ............................. CTGCGCCTCACCAACTCGGCCGACAATGTGAT 391563 29 96.6 32 .A........................... ATTCATATGTTCCACCTAATAAATGGCCTGCA 391502 29 96.6 32 .A........................... CTCATTGGCTTTTCGGGTGAGTGCAGACACTC 391441 29 96.6 32 .A........................... TTTTTCGATACCGTGGTAGGTAACATGCAGCT 391380 29 96.6 33 .A........................... CGGTACCGGCTGGGGCGATGGCTTGCTGGCGTT 391318 29 89.7 0 .A........................GT. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.9 32 GTGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGTCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATTGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCTTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATGTCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGTGGCATCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //