Array 1 252463-249665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000002.1 Aulosira sp. FACHB-615 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 252462 37 100.0 35 ..................................... ATAACGGAAGTTATTGATGAAAAGACTGGTGCTAG 252390 37 100.0 34 ..................................... ATAAGGTAGATGGTCACGCAAGCCTGCTTCCAAA 252319 37 100.0 37 ..................................... TGACGGGTTCTTTTTTAGAGAAGAAGATGGTGATTTT 252245 37 100.0 36 ..................................... GACATGAAGGACGGTAAATACAGGTTTGAGCATATT 252172 37 100.0 37 ..................................... CAAAGGAATTCCCAGAAGGCTTGAATTTAAGGTAAAG 252098 37 100.0 32 ..................................... ACGCGTAATTGAAGCACGCTTTACAGACACCG 252029 37 100.0 35 ..................................... GAGATGTTGTTTTAGGACTGCATCAGAGTTTAGTC 251957 37 100.0 34 ..................................... ATGCCCGTAAGCGGCCATAGCGAGTGCATCGGCA 251886 37 100.0 35 ..................................... CAACAAGCTGAAGAATTTGCCGCCGAAGTAGAAGA 251814 37 100.0 34 ..................................... TGGCGATACACCGGGCCTGATTATGATGCTGATT 251743 37 100.0 39 ..................................... ACGATCAACGGTATCGCTTTGGCGTAATTCAAATCTAAA 251667 37 100.0 40 ..................................... GTTTACTTCTGAATCCCACTAATGTCGGCGTTATCCAAAA 251590 37 100.0 36 ..................................... AACTTGCATTTGCAAAACACGCGCGAGTCTTGCAAA 251517 37 100.0 37 ..................................... ACGAGCTAGGACAAAAAGGAAAATAAAAATGCCAATT 251443 37 100.0 32 ..................................... GCCTAGTGATTGTTGGATGTCCCACCATTACG 251374 37 100.0 35 ..................................... GATCTAACCGCGTCCGCCCCAAGAGATTCACTCGA 251302 37 100.0 36 ..................................... AGATTTTCAATCCCTATCCCATAAAATTTAGCCAAG 251229 37 100.0 34 ..................................... AAGCTAGGTATTAAGGTTGATTTAATATTGTTTG 251158 37 100.0 33 ..................................... GTACACTCAACCTTAATAGATTTAGGATTACTA 251088 37 100.0 36 ..................................... GAAAGTGGATTTCAGGAATAGAATGTTGTAAGCTAA 251015 37 100.0 33 ..................................... AGATGTGGATGATATGATAAAGGGTTCAAAGAA 250945 37 100.0 35 ..................................... AAACCTGAATCTGGCAAATATCAGGTGCGATCGCT 250873 37 100.0 36 ..................................... TTGCTCCACTCCAATCTTTTGATGAGGGACAACTAT 250800 37 100.0 35 ..................................... CCCCAGTGCCGACGAACGGAACACTCGCCAATCTC 250728 37 100.0 36 ..................................... ATTGATAGTACTTGCAGCTTCTAACCCCAATTGAGC 250655 37 100.0 34 ..................................... GCAACCTCCAGTCGGATAGATGATTGCATCTGAG 250584 37 100.0 35 ..................................... CACTTCCTTCTTTATATCCATATTCAAGGATTATC 250512 37 100.0 33 ..................................... CTAGCTTTTTTGTTTTGTAAGTTATTTACTATT 250442 37 100.0 35 ..................................... CCACTTTGCTTATCTTGATCTTGTGATTGAGAATC 250370 37 100.0 33 ..................................... TTGTATTTACTGGTTGTGGTTGCTGCACAGCTT 250300 37 100.0 42 ..................................... GAAAGAAAATCAAAAGTTAAAACTGTTTAAATTGTGCTAGTA 250221 37 100.0 38 ..................................... AAGTTATTCTTCAATGAAGAAATAACGTAAATGGGTAT 250146 37 100.0 34 ..................................... CAGCGCGTCGGAACATATTAAGTATTTGCTCTGG 250075 37 100.0 41 ..................................... GGCTCAAACTCAGGAATCAGGAGAAGGATACGAAATCATTG 249997 37 100.0 35 ..................................... ATCTTGCGGTACTAATTCAAAAACAGGTAAAGCAT 249925 37 100.0 35 ..................................... AAATTCTCTAAGAGATGAGTAATCTTTAAACCATC 249853 37 100.0 41 ..................................... AAACAGCAAAAGTAATCAAAGAGGCGATCGCATCAAAAGAA 249775 37 100.0 37 ..................................... TAGATAATCCATGACATGAATTACATCTGCGGGTTTA 249701 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 39 37 100.0 36 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : GTTGTGGCAAAATCTGGTGGTAACGGGAGAATTTACAGCCTTAGAATTATGGCAAGCTTTAAGTAGTAATCCCGCAAAATGTTTGGGACAGGAATTAAGTACATTAACTGCTAATCAAAAAGCCGAGTTAACTTTGTTTGACCCTTCGCAAACCTGGAAAGTGGAAAGGAAAAATTTACAGACACTTTCGAGTAATACACCTTGGATGGGGCGAGAATTACAAGGTCGGGTGTTGCAAATTTGGTGTTAAATTAATTTTGGTAGTTTTGGCGATCGCGCGGATGGGTAGGTGTTCAAAAATAGCGGTTCGGGAAAATGGCTGTATTCCTTTCAGCACAAGCTTTTGCCAAAAAAATAAATTAAAATCATCCGCGCACCTTGCTATGTATAGATTCCAGCGTTTTTGTGTCAATCAATTTTCATTATGCTGTGTTATAATTTTTCCATCCGCGCAACTGAACCTTGAAAACTTTATAGGACAACGCTTTCTGGCTCCCGCT # Right flank : AAATAGCAGAATTGAAAGAGCAGAATCAATCTTTAATTGCAATTTCAACTAATCCCTAAAACTGCTCATTCTTACCTAATAGGACTTACGTAATACCAGTTCTGCATGAAGATGCACAGAATCTTAAGAAACGAACCGCCAAGAGCGCCAAGAGCGCCAAGAATCTAGAGTTTCATTTAGTGCAGCTTCATATTAAATTGGTAAGCTAATCAGCATTTAAGCTGCACTATTGAAATTGTACATATAGCGTTTCTCGGTTGAGTGCAGTACAAGTAGATAGAGAAAAGAGGCTAGAGACTAGAGGTTAGAGGCTAGGGAAATGTACCTCACTGGAATGAGAACCGCTATAAATGACTTAAACTCTCTCCTCTGCCCCTCTGCCCCTCTGCTCCCCTGCGGTCTAAACTGCAAACTAAGTGCTTAATAGCTTATAAGTGTCACGATTGGTAGTTGGTGCGTGACGCTATAAATTTGATGACTACGTTTAAATCTTCTCGTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 329393-330747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000002.1 Aulosira sp. FACHB-615 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 329393 37 100.0 34 ..................................... TTTGGTGTTCTGAATATCTCCGATACTCGATGGC 329464 37 100.0 33 ..................................... AAAGAGAATTAATTCATATATTTATTATTGGAC 329534 37 100.0 36 ..................................... ACAGGCACGATCGCTTTCACCAAGAATCTGAATATT 329607 37 100.0 35 ..................................... TTTTACATTGCCTGAGTACATAAGAATCTATTTTT 329679 37 100.0 38 ..................................... AAAACCTCTTTCCGTAAGCGTTTGAGATAATTTCGATG 329754 37 100.0 35 ..................................... CGACTGGGAAGGAATGACGCTATACCCATAATCGA 329826 37 100.0 36 ..................................... CATCGGGAATCGTAATATGAGCTTCTTGCTTGAATT 329899 37 100.0 36 ..................................... TACATGGTAGCATATTTTGACCATGTAAACATGGCT 329972 37 100.0 38 ..................................... AATCCGCACATATTCATCTATTCCCCTAGCGCATCCTA 330047 37 100.0 43 ..................................... ATAGCCATTATTACTCTATATGAGGAATATAAATGATGAGTGA 330127 37 100.0 41 ..................................... CTTTATTTGCCAGGATATTGGCGATTGGAGATATATCAGAA 330205 37 100.0 34 ..................................... AGCAAAGAATTTTCAGAACGGCTATTTTTTAGAC 330276 37 100.0 36 ..................................... ATCAAAAATTGGGAAGGCTCAAAAATTCCTGAAGAA 330349 37 100.0 34 ..................................... ATCGAAAAAGAAGAAGCGATCGCTGCTGCAAAAG 330420 37 100.0 34 ..................................... AAGTATCTTTAAAATTATTTTTATTTCTTGTGGG 330491 37 100.0 41 ..................................... GTTTAACCAATTCCAGAACACCGACAGGTAGCGCAGGAGGG 330569 37 100.0 34 ..................................... CTCATATTCATCATCAACAATGGATATCTCATCT 330640 37 100.0 34 ..................................... ATAACAAAACCTGTACTATCCTCTAGACAGTAAA 330711 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 19 37 99.9 36 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : GCATTATTAATGTATGATATGCTGACGCGGATTCAAAACTCCACATTACCCGGAAGACCGCGTTTAGGTTTGCGCCAAGTAAAAATTACCGTCGGTGAACCAATTTCTGTTACCGAACGCTGGGAAAAGTCCCAAAACAACCGTCAAGCAGCCAGACAAGCAGCCAGTAATTTAACCAAAGACTTGCAAACAGCATTAGAAAATTTGATTAACTAGTACAACAAGGCAAAAGGAAAAAGGCAAAAGTTAAAAGTAAGAACTGAATTTCCTCAAATGCGCGAATGGATAGGTGTAAAAAATTAGGGTTTCACCAAAATGGCTGTATTCCTTTCAGCATCAGGTTTTGCCGAAAAAATAAATTAAAATCATCCGCGCACCTTACACAGTATAGGTTTCAGAGATTCAGCGTCAATCAATTGACATTATTGGGTGTTATAATCAACCAATCCGCGAAACTGAACCTTGAAAACTTCATAGCACAAGACTTTCTGCCTCCCGCT # Right flank : CTTTATTCACAGTTATAGCAATTTGAAAGAAGAATGCGACAGATATAAATCAGAAAAGTCTTACTGGAGCTAAATTTATTAATTGCAAATTGCAAATTGCGAATTGGTATTACTTCTATACATTGCATTGTTGATGTACAGATAATAAAGTGCATTCCCAAACTAAACGCGGTTGGGCGTAAACTAAAAGTGCCTTGCGTGCCTGTTCTAGCTGATTAATAACTCCTGGTTGATGCCACTTTTGCCAATAAGAATGTTGTAGGTAATCAATTAACCATAGTTGTGATTCTGTATCTAAATCTTTGTCAATTGTTTTAGCTAGTTCTAAAGCATGGCGGGCAGATTTTGGGGCGGCGGTGAGGTGTGAGAGTAATTCAGAGGGGATAACTTGTAATTGTTCATAACAAGCGATCGCATTTCCCGGACTGCCAGCCGCTATACTCAACACAGCCGGATGTTGCAAAATTTCTTGATGATTTGTTTGCTGCAATACTTGACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 103017-102403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000022.1 Aulosira sp. FACHB-615 contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 103016 37 100.0 34 ..................................... TTACCTTGTCAACTGTTCTTTCTTCTAAGAAGCC 102945 37 100.0 34 ..................................... TTAGTATTGGTGAGTTATTTAAAAGAATTGGTAT 102874 37 100.0 36 ..................................... CTTCTCGATTTCCTCTTCATCTACAAACTTTGACTC 102801 37 100.0 36 ..................................... ATCTGTTGCGGTCTTAAGCGCGGCGCTTGGTATTGA 102728 37 97.3 38 ........................A............ CTTACCAGATGCAACATCCTTATATACATCCTCATCTA 102653 37 100.0 31 ..................................... TATCGGATACTGTTCTTTGTTCTTTAAATGA 102585 37 83.8 34 .AAAG.TT............................. ATAGTTACATGTTCCACCTGGGTTGGTAGCAAAG 102514 37 100.0 38 ..................................... TAGATGACTCCGGGTTTTTATTTACTCTTTCTGAAAGA 102439 37 86.5 0 ........AC...........A..A.......A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.4 35 GTTTCTAACTACTAATTCCCCTCACGGGGATTGAAAC # Left flank : AACGCAATGACAGGCTTCCAGAGCGATCGCAAAACCGAAAGCTAGACGACAAAACCAAACTTTGGCTAGGATTTCAAGACTTGTGTGTACACCGTAGCCTTTTTAAGGGGGATTTAGGGGGATCTAAAATGTTTGGCTACCAACAACAGGGCTTTTAAAACATCCTCTCCTACACCCTTACCCCAATCCTTGATTTTTTCTCCCTCTGCGTAACTCATCCGCATCGTCAACTAAGTAGATACCATGAGTACTAGACAAACCTGACTGGTCACTGTATCATGTTTGTATTAACTTGATGGTTGACAAATCAAAGCGGGGGCTAAAAACCCTGGGGATTCGTCAAAATCGCCAGAACCTTGACAACAAAATAATTACAGCGTTTCATATATCTGGTAAGTTGAGAATTAGTCGCAATTATGACGGCTGAAATTGACATCTTTTTGAGATTCGTCAAATTGCTTCCCAAAAACCTTGCTCCGTATCGGTTTCAGTGCGGCGGG # Right flank : AAAAGTGCGATCGCAAAATCTATCGGTTTTATATAAGACTAATATCTGCGCCTACACAAATACATCCAGCAATCAAACCGGATTTATATAGTTCATACTGAGAAATGAATAAATAGAAGTTCTTTGTTTGCTAGTTACAGATGATGAAGAAACTGCGGTTTGCTGTTTTAGCCATTAATATTATTATCTGCCTGAGTATATTTTTTGGACTAATAAGTAAAGTCTCTGCTCAACAACCGCAGATTTTACACCCTTTAACGCCGTTAACAGAAACAGAAATTACCACAGCCGTGGAGGTAGTTAAAAAAGCAAAATCGTTAAGCGACACGGCTATTTTTTCGATTGTGGCTTTAAAAGAACCGGATAAACAGGAAGTTTTAAATTTTACACCCAATCAAGAAGTTCAACGACAAGCTTTTTTAGTAGTATACGAACGTTTACAAAACAAAACCTACGAAGGTATTGTTGACGTAAAACAGCAGTCCCTTAATTCTTGGCAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAACTACTAATTCCCCTCACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 43408-43585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000023.1 Aulosira sp. FACHB-615 contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 43408 36 97.2 34 ....C............................... TTTTAGAAGGTGTTAATAGCGAGCTAAAATCTGG 43478 36 100.0 36 .................................... CAGATCCACGAAATTTTTAAGGTGACAATGGACAAG 43550 36 97.2 0 ...................T................ | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 98.1 36 CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : CCGGATTTCTCACCACACCTTTCAAAGCCTGTGCAGGGGAGCAGGGGAGCAGGGGGGCTGGGGAGAATGAAGGTACTCTCTCCCCAGCCCCTCCGCACCTCTGCCCCTCTGCCCCATCAAACGCCTGAAGCTTGTGAGAAATGCGGGATACACTCCTATACCCCTACACCAATAACTAGCTACCCAACTTTTTAGCCTTTCATCACTATATTCACATCTTGCAGCTGTTTTGCATGGATCTACGACTGTGCCTTTCAAAAACCAATCAAAAAATCATATAACTGTTGTCAGCACTGACTTCCAAGGTTTTTACATCATTTGAAGGTGCTTGCATTTTATTTTAGGAGCTTGAAATCTAGATGAGACAAGGCTTCCAAGATTAGCATCTGTTCAAAAAAATGAGACTTAGGTAAAAATTTGTTTTCTGTATTGCTCCTGGGTGCTAGGTGCTTGTAATATCAAATCTCAGGGCAGGCAGGATATGGATTTCCGAGTGCGCT # Right flank : CGACAATAACTATCAACTGTCAACGAAACTTTTTGTAATTAGTCTTGTCTATAAGATTAATTCATTAGTTTATCAGGAATATATATGCGATCGCCTATCGTAATCGGTACAGGATTACTTGTATCTATAATTTTAAATACCCAAGTATTTGCAAAATCTACAGTCAATTTACCACAAATCACTGCCCAGAACTCTCAGCAACAAATATTAAATCAAAATAATCAAAAGACAAACTCAGGGCTGATTACTCTGCAAAGAACAGCCTGCTATGGTACTTGTCCCATTTATAAAATTACCATCTTTCCTGATGGGAGAGTTGTCTACGAAGGGGAGCGTTTTGTGAAAGTTGTCGGTAAAAGAACTGCCAGAATTAGTCCCCAAGCAGTAAGAAGATTAGTTGCAGAATTTAATAAGGTAAACTATTTTTCATTAGCAAATAGCTACCAAGGCGGAAGGACAGATGCGCCTTCTGCAATTACTTCTTTAACTATCGGTAAACG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 78010-78692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000029.1 Aulosira sp. FACHB-615 contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 78010 34 88.2 36 A...T.........C..............A.... CATCACACAAACAATCGAAAACGCTATTACCATATT 78080 34 100.0 37 .................................. CCATTCGCTATGCGAAGGGAGAAAAAACCTCTGAAAA 78151 34 100.0 37 .................................. CTATGCACAACGGGCTAATACCCCGATTGCAGATGGG 78222 34 100.0 38 .................................. CCATTTCCCGCAGGTAAAGCCAGTGGACATGTGATTTG 78294 34 100.0 41 .................................. CCGTCTATGCAATATCTTCCTGATGCGAATCAGAAAGCATT 78369 34 100.0 42 .................................. CCCTGCAAGCGACCGTCCGGCTGCATGGACAATTTCTGCGAT 78445 34 100.0 36 .................................. CTTTTCAGCATATGCTGTGTCAAAATCTTTGTTGTT 78515 34 100.0 36 .................................. CCCTGTTTTAAAGCAACTGATCGAGCAAAAGCTTAA 78585 34 100.0 40 .................................. CAATTGCTTTCTGGAAGACACGGGAAGAACAAGATTTATA 78659 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================== ================== 10 34 98.8 38 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Left flank : GGATCGTATATTATTAGTTTTAGTTGATGTCGCCGCACGGCAATTTTAGCAAGTTTAGTCTGAAAAAAGGTTTCATAAGCATCAACTGGAACTGCTAAATATAACTGACGTTCTGGTTCGTTTTCTTCCAGTGCAATTTGATAATTCAAGAATTGTCCCAAGGCGGTATGAAAGTCGCTAACCGCAGAGTTACTCGCAAAACTTTTGATTTCCACAGCTATTTTTTCGCCTTCTCTTTCTGCTGCTATCAGCCTTTCTGCACCCAAGTCTATTTTAAGCGTCACCTCCTCAAATTCTATTTGTAGGGGATCATCAGTAACTATCCAATTTTCTTTCTGGAGTGCTTTTTTAACCGCTTCATGAAATAAATCTCTAGCTGACATCTAGCAAAAAACTTTGTTTGTATTTATCACACCACTGCGCGTCTATTATATCAAATGCAGTTTCAACAGTGGTTTTGCTGTGCGATCGCATTATTACCCAATCCAGTAATTGATGAT # Right flank : ACACTACCCTTTTGGAACACTTGCTACAACTGGGTTTGAAAGTGCCATTTTCGCGGGGGGTCTGATTTTACTGTCAATAAGCATACTTTATTGACAATTAGACACCATCACAGACACCTCAAAGCCTTACTGAGTAAGTGATTCGCGGGGGTCAACGGAAGAATCAGGGTTTCAAGCATTGCCTTACCCCCGCGAAAAATTTGCGTGTGAAAAGTAAAAATCAAGACTTTAACTTTCACCAGGAAACGCAATATTAAGTTTTCAAGGTTCTGCTTTCTTGAAACAGAGTATACCAAACTACTCCTCAGTTTTTAAAGCGCGTCTTGCCAACTTGACATAAGTCTTCACTGTTTCATAAGGCATTTCTAAATCTTCTGCCACTACCTGCAACGACTCTCCCATTTCCCGCCTTGCTAAAATTGTCGCCCATTTCGTGGCTATTTCATCTGCTCGTTCTCCACCTGTTCGTTTGCGTCGTGCTTTAAATATCTGTGTTAAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 68517-69502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000031.1 Aulosira sp. FACHB-615 contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 68517 34 91.2 41 A..C.......T...................... CCCGTATGGCTGCTGAACGTTTCACACAAGAAACTGGTTTA T [68521] 68593 34 100.0 40 .................................. CATTTTTGTTTTCAGAAAGTTTTGAAAATTTTTGGGTAAA 68667 34 100.0 40 .................................. CACTAATAATATTTCAAAGAACAGGTGTAATTCTACGCAA 68741 34 100.0 38 .................................. CTGCTCGCACAGGTTTTGGAGGCGAAAGCGGAAGCATT 68813 34 100.0 38 .................................. CCAGCGCCAGCGCCAATCCCAACCCAGCCGCAATTGCG 68885 34 100.0 41 .................................. CTGTTGACTGGGATAAAGGAATTGACCAGTGGCTGCTTCCT 68960 34 100.0 39 .................................. CGAAAAAAAAAGCCGAAGAAAGGGCAGTTTATTGGGAAT 69033 34 100.0 38 .................................. CAGCTGTCTGATATTGTGGTGCCAATCCACAGGAAATA 69105 34 100.0 39 .................................. CTTGCGGTATAGTCGGAAATTTTATGCAGGTTCCGTACT 69178 34 100.0 40 .................................. CCAAAATATGTCCCAAAATCACAAGGGGGCACCAGTGATA 69252 34 97.1 40 ........................G......... CGTTTTTGCTTATGATCTCTCTGTTTTTTGGCTTTCTTTT 69326 34 97.1 39 ........................G......... CCGGTTCGGAATAGCCCGACAGTAAAAAAAATACCCCCT 69399 34 97.1 36 ........................G......... CGCTTATGGCTTTTCATGGGGAGAATTTAAAGGAAA 69469 34 97.1 0 ........................G......... | ========== ====== ====== ====== ================================== ========================================= ================== 14 34 98.5 39 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Left flank : TTTTCTGCTTCTACATAATTACCTTGGGAATAGTAAAAGGCGGCGAGATTATTTAAAGATTGGGCAACATCAGGATGTTCTGAACCTAAAAGATTTTTTCTGAGGGTTAAGGCTTGCAAGTATAACGGTTGGGCTAATAAGTAATGTCCTTGCATCCGATATAATTCGGCGAGGTTATTTAAGCTATCACAATATTCAGGATTTTCTGTTAGCTGTTGATGTTTGCCTAGATTTACAGCTTGCTGGGCAACTATTAGAGCTTGTTCTAGGTTTCCTTTTCCTGCTAATTCGACAACTTGTAAGTTAAGTTGATTGAGTTGTTGTATAAGTTTTTTCATCTGCTAGTTCCAGATGTTTATATGTTTTTTTCGCTTTTATTAATTACTTATAGCACTCCTAAATCATCAGTGAACAACAAGATCCCCGACTTCTTAAAGAAGTCGGGGATCTGAGCCTCTCCATTTTCACAAATCAAATAGGATTGGTATATCTTATCTAAA # Right flank : ACCCTACCCTTTTAGAAGCCTTAGCCAGAGAGGGTTAGAGATAGGCATTTCTGAGGGGGGTCTAATTTACCTGTCAATAAACACATATTATTGAGAATAGCAGACTATTAGACTATCCTCAAAAGCTTATACAGTAAGCTATCTGAGGGGGTCAACGAAAAAATAAGGGTTTCAGCCATTGCCTGACCCCCGCAGGTAAACTTATGTAAAGAAAGTCAAAATCAATACTTCAAGATTCAGTTGGAAACTTGATATTAAATTTTCAAGGTTCTGTGCTTTTAAAGGGCAGTATAACAAAATACTTTAAATTTTGAAAGCTTCAAACATTAACTTTTCTATCATGCAGTAATCAGATAATCTGTATGCCAAAGTTGATATTCTCCGTGTTTGGTCAGATATTCTAGTAACTCTGTCAAATGACGAGCCTCTAATTCTAAAACCTCATCATTATCTTGGGTTAACCAGTCTAATTGAGGTACTTCTTTGGTAATGATGGCGAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAATGAATTGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 2 74879-73753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000031.1 Aulosira sp. FACHB-615 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 74878 35 100.0 36 ................................... CCGTCCCTTCCACATGGTACTGGACGACCCTCTCCT 74807 35 100.0 41 ................................... GCTTATCGAAGCTTTCGGTGCCGAATACAAAAAAGGACAAT 74731 35 100.0 39 ................................... TTAATAGAAAACGGCCACGCAGTTTACCTGCATTGGAAG 74657 35 100.0 37 ................................... TCTTTGCAATAATGTGCAAGACTGTTGCAGCATGTTA 74585 35 100.0 36 ................................... ATTATAAACTACAGGCAACAGCAGAAAAAGAAGCAA 74514 35 100.0 37 ................................... GATTGGAAATGAGGATAGAAGCTCTTACAGGCTTATC 74442 35 100.0 37 ................................... CTCTGAAATCCCTCCTACTACACAACGAAAAATCCCG 74370 35 100.0 42 ................................... TGATGATGTTATTCAATATGGTTCCAGATCTTGCACCAGAAT 74293 35 100.0 39 ................................... GAGTATTTTTATTAAGTTACAGAGGAGAATTTGTAACAA 74219 35 100.0 42 ................................... TTTCTGGGAGTTTTGAAATCAATAAAAGATTTCAGGTTGAAA 74142 35 100.0 35 ................................... TCAAATTCAGGAAGGAGATTTAAAATATCCTTCTT 74072 35 100.0 33 ................................... ATTTTCTCGGAAAGCTCGAAAATGATGCTTTAA 74004 35 100.0 38 ................................... CAATGCATTTTTTACGTGAACACGTTATTCTACAATAA 73931 35 100.0 38 ................................... AACGCCAACGCCAACGCCAACGCCAACGCCGCCATTGC 73858 35 100.0 36 ................................... TCTTTCTCGCGTCCGCGTTGAGAAAAACGACAAACT 73787 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 16 35 100.0 38 GTTTCCATCCCCGTGAGGGGTAAAGGATTTAAAAC # Left flank : CTTTGTGTAATTAATTATGTTTAACTACTTAGTATCCCAGACTTAAGCATATCTAAAACAATAAAGTGATTGTTTATACTTTTTGTTGATTTAGCCAAGCTTCGAGTTCAGCCACTTCTGAGAAATTTAACAACTCTTCTCCCCATCCAGGGGTAAAAGTACAGTCACAGGTAAAATAGATGTACGCCAAGCCTCCATCCCCAAATCCCACAAACCACCATGAAACAAATTACCCTTGCAGAACTTCCCGAAACTGTCCAAAACCTAATTAACCAAGCTCAAAAAACAGGCGAACCCCTCACTATCATCCAAAATGGTGTCCCCTTCGCCATCATATCCCCCATTCAGAAAAAATCACTCCTGCAAACACTTTCTACCCTTGAACCATTGGACGAAGACTTTGCCGACGTGGACGAAGGATTATTGCCCTTAGAGGGTGTTTGAAAAAAGGAATTAAAACTCAATGAGTTTTTGCAAATTTTAGGAACCATCGGCGTAAA # Right flank : CCTACTCTTACAGAGAGCTTACCAAATAAGGCTTACAGAACCATAAAACTGAGGGGGGTCTATTTTTACTGTCAACAAGCCATAGTTATTGACAATAAAGCAGTTTCAAAGCCACTCAAACCCTTATACAGTAAGCCATCTGAGGGGGTCTACGAAACAATCAGCTTTTCAGCCTTTGGATGACCCCCTCAGTTTACATTTCTTTACAAAATGGCTTTAGGAAACTAACCATGTTGATTGAATTTTCATGGTGCAGGCGTTGGTATAAACAATACCATACTAATCAACATGATGCAATTTCTTGATTAAGGTTTCCAAATCATTGGTCGATAGATTTTTACCTCTCTTGTCAGACAAGCTACGTACTCTCGCACTTGTAACTCTAAACACCTACGAAAACTCACCTTATATCCTGTGTTGGGGTGCGTTAACTCAGACTGCAACTTTTCTTCCCAGTGCTTGAGAAACTTTTTCAACGTATGGGGTTGTAGATATACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 327773-327438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000003.1 Aulosira sp. FACHB-615 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 327772 37 100.0 39 ..................................... TGATTTGAGTCGATTACAGCCGCAAATAATTCTCCGCGC 327696 37 100.0 36 ..................................... GAAAGACATGGACGTTTTTTCTTTCTAGTTTCTCAA 327623 37 100.0 40 ..................................... TAAGCCTTTGTTCGTGTGAGGGCAAAGCAGGCAAGTTAAA 327546 37 100.0 36 ..................................... TTTGCCCCTGGCTGGAATCCTAATCGCACCCAAGAA 327473 36 97.3 0 .........................-........... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 99.5 38 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : AATTCACTAATCTGAACCTTGAAAATATAATATTTTTATAACAGCGCCGTAGTTCATGCTCTTTTGAGCCAATGTGCTGCGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACCGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTTTAGAATTCTATAGGTGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCTGTAGCCGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTTGGCGTGTCAAAGTGGGGGCAAAATCCCCGGAGTCCCGCCAAAACTTTAAAACCCTTATCCAGTCTTGAATTAAAAAACTAGCATGTCAATACATTTAGTATTTTAATTTTCAGTTCGAGACTCTTTTAAGCCGACCTGCCAAAGTATGTGTATGGAAAGCTCTGATAGCAAGGGTTCTAGACGGGTCGA # Right flank : AAATTTTTTAGAATTACAATTTTAGCGGGAGGGTTGAAAGGCGCACTTCGTTCGGGATTATCCTGAATATTTACAGTTATGTTAGGCTTTGGGGGAACTAAACCTTGAAGTCGGTTTAGAGAATATATTCATCGACATTAATTTGTTAACGGATGTATGAACAGGTTTAACGACATCAATTTGTTAATAGCGTCATTAGCCTGTTAATAACGACATTAATCTGTTAACAACGACAAATAATTAGTTATTCGACACTTTAAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGCCAAAAAAAGGCAATATCTTGATTATGATATCATAAATGTCCGAAAAAAGAGAGTAGGTAGAGCAACCAGAAAATTAGCTGATCTAAAACTGCATAGATGTCATCACAACAAAATAACCAATGACAACTATATATAGATTGCTTGCTAGGATTAGATTTGTATAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 179439-177099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000012.1 Aulosira sp. FACHB-615 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 179438 37 100.0 37 ..................................... CGATGACATCGAGATGAATCCGGCGCACCCTGCTTAC 179364 37 100.0 37 ..................................... GCAAGATACAGGTGGAAATGTCCTTGAACTATTTTAT 179290 37 100.0 41 ..................................... GAAAGATCATTTACAGTAGTTTCAGTTTCTGTCTGATCCAT 179212 37 100.0 38 ..................................... GGGGCGATTCGGATTTGAATTGAGAACCCCCAACTTAC 179137 37 100.0 33 ..................................... GTGTGAATAGCTTGGATATCCTCTTTTTGAGCG 179067 37 100.0 38 ..................................... AAATTCCCTTGGAAGGTTGCTGCTTGAATTGTGCCAAG 178992 37 100.0 35 ..................................... TACTAGCACATGGATTTTCTAACCAATCTCACAAA 178920 37 100.0 37 ..................................... GCCAACCAAGACTTTTCCAGGCGACGCTGGGAGCAGA 178846 37 100.0 38 ..................................... CATTGGGAGTTTTGTAATTTGGTATTTCCTGGCATAAT 178771 37 100.0 33 ..................................... AGCATTGTCTTGGTTGAAAGGACTGGTGATAAA 178701 37 100.0 39 ..................................... ACCAAAACCGCAAGCAGGAGCGCAAGAAGTATTTTATAA 178625 37 100.0 34 ..................................... TTGGCTTTGGCTTGGGCTTGCGAATTGTAGATTT 178554 37 100.0 39 ..................................... AGAGCAAAAAAATCAATTACAGCAGCAATTGGAAGCGGC 178478 37 100.0 37 ..................................... ATTCGGATCTTTGCCGTTTTGTTTACACCAAGCGCGG 178404 37 100.0 37 ..................................... GAGAAGAATGGCAGAGTGCTAAATATATTTGATTTTA 178330 37 100.0 54 ..................................... TGATTGGACGGAAGACTTTTTTAAAACCATCTTTGGAACCGAGAATTATACAAA 178239 37 100.0 41 ..................................... GGGCGATCGGGTCGCCGTAGATGTGGGCGCAGGCTGCACGC 178161 37 100.0 41 ..................................... TTGTTCGAGTTGAGCAAGTGCATTTTTGAGGGTGAGACGAC 178083 37 100.0 34 ..................................... TATAAGTTAATACCATTTAAAGCTACATAAGTTT 178012 37 100.0 36 ..................................... AGAATCACAACCACCAATCACGGGAACACTAGGAAA 177939 37 100.0 39 ..................................... TTTTAGTTGCGAGAAGGTACTTTAAGGTATCCCCTGAAG 177863 37 100.0 33 ..................................... GTGACCGACATAACAACCGGAAAAGAACTTGTC 177793 37 100.0 35 ..................................... AGAAAAATTGTTTGAGGTTTAATGCGATCGCTATG 177721 37 100.0 32 ..................................... ATCAAGAAAGCTTCCCCTAGCTGGTTCGTAAT 177652 37 100.0 37 ..................................... AGAATTTATTAATCACTAACCCATGCTAACTACTTTA 177578 37 100.0 45 ..................................... AAATTTTTCAAAATCATTGATAGCACTTAGCCCTAAGTTCCAAAT 177496 37 100.0 34 ..................................... GTCATAGACACTGAATATCAACAAGAAACCCTCG 177425 37 100.0 34 ..................................... CAAGGTGATGGGATTGGATCACCGGATGGTAAAT 177354 37 100.0 39 ..................................... ATCCCAGCAAATAGCAATAATCCAATTGCAGTTAAAAAA 177278 37 100.0 35 ..................................... ATACCCCTCGCTGCTTTTAGGTAGAGATTTATTTT 177206 37 100.0 34 ..................................... GGGTTGATAAGTTGATTTGATTTGCATAATAAAA 177135 37 86.5 0 ...................T.......T.G..C...T | ========== ====== ====== ====== ===================================== ====================================================== ================== 32 37 99.6 37 GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : CCAGAAAACCTGATAACCTTAGTTGTGGGAAATCAAACCGCAATTAAACCACCATTAACAGGTTTAGCCAGACAAGTCACAACCATCGATGTGACAATTCCTGGTTCACCATCACAAGCCAAGAATTAATTATCATCAGAACTTGTGAGATGAAATGAGTTAGGGTATGAGGGTGTAAGTGAAAAACTCCTACACCCCTATACTTAGCCTCAAATTTTCTCACGCAGAGGCGCAGAGTCGCAGAGAGGATAAGTAGGGATAAAATTCTTCTCGATGCGCGGATGGGTAGGTGTACAAAATCTCCCTTTTGACAAAATAGCTAGATTCCTTGAAGTGCAAGCTTTTGCAGAAAAAATTCATAAAAATCATCCGCGCACCTTACCCAGTCTAGGTTTCAGCCATTTTAGTTAACTCAACTGATATTTCCCCATGTTAAAATCAACCCATCCGCGAAACCGCACCTTGAAAACTAAATACAGACTGCCTTTCCAGTCCCCGCA # Right flank : TTGATGTGAAAGGGTATTTAGGGGGGAGCTAAAATGTCTTGCTACCAAAGAGAGGACTTTTAAAACATCCTCTCAAATATCAATAAATCCCCCGCTAGAAAAGATAGATTATTTTAAACTTAAAGAATCATGTTGTGATAGTAATTTTTCTACCTTTGCCTCATCAATTCTTGCTGTTAATCTTTTAGCTTCGTGCAAATCTCTGGTTGTTTTTGCCAAGGTAAAAGTCGAACCAACAGAAAAAGCTAAACCCATACCCATAAAACCTTTTACCCAGTTATCTACGGGCAAATTCACAATCCCAAAGCTAGTCATAGAAACAGAAAGCATAAAAGCAGCCCATGTTTGAATAATCCAAGCTGTACTATCTTTTTGTGAACTTAGTTGCTGCATATTTCCGCCCGATAAATTCAAAATTTTCTAGCAATAGCAAAGGTAATTAGGATATTTGGAAATGAGACAAACTCGACAGAAAATAATACCAAATTGAAGAATGATTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 77-1290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000035.1 Aulosira sp. FACHB-615 contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 77 37 100.0 35 ..................................... CCGTATGTGATTTATGGCAACGATAAGCTGTGGGC 149 37 100.0 37 ..................................... GCCAAGGTCATCCTCATCTTCTGTTTCGCGGACTGCC 223 37 100.0 38 ..................................... TCTCAATGGACTTTTCACTTGTCTCTCCCGCTAATTAA 298 37 100.0 36 ..................................... TTGACTACCCGATTAAAGGAGTTACAGACTTAGCTT 371 37 100.0 35 ..................................... ATCTGCTTGTTCTTGGGCTTCTTGTTGAGAAGTGA 443 37 100.0 36 ..................................... ACCTCTAAAACTGCTGTAGCATTTGTAACAACTTTT 516 37 100.0 39 ..................................... AGTAATTCAGGAGTCTGTAAGAGCAATCCAGCCGACTCA 592 37 100.0 37 ..................................... CGCAACCCCAGACGCAAGACTGAAAGCATTGCTATAT 666 37 100.0 36 ..................................... CAATCACATCCGGCTGAGATGCTAAGTGCTGGGCAA 739 37 100.0 37 ..................................... ATAAGGGTATGAGCGACACCATACACCTCCTTTCAAC 813 37 100.0 34 ..................................... AGCTTCGTCAGTTGCATCCATCCAAGGATTACCC 884 37 100.0 37 ..................................... TTGTAAAAGTTACGCTCATTCAAAAAAGGCTCATTTA 958 37 100.0 34 ..................................... AAGCTAAATCTCTGCGTGGGGTGATGACAACCTT 1029 37 100.0 37 ..................................... TGTTGATCGGATGTGTCAACTTATAGCGGTTCTCAAA 1103 37 100.0 38 ..................................... AGTACTGATGTACCGTCAGGTTCAATATGGCGGTTTGC 1178 37 100.0 39 ..................................... ATTGATTCATTTTCAACTGTGAACTCGACTTTAACGCCT 1254 37 91.9 0 .........GA.T........................ | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 99.5 37 GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Left flank : TGAAATCGACTCTTTTTTGAGGTTCGTCAAATCGCTTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGCTTCGAGCAG # Right flank : CCAGTGATCCCCACTTTTATCCGAGTTTTACCAACCGTTTCCAAACCTAATTACCCCGCAATATCTCCCTTAGAATTAGGTTTTATATAAATTCCAAGTATTTAGAATTTCTAAAGCCATTTCTGTTCTCATCTCCCAAGGCAGTATAACTTCTACTTTTGACCCTAAAGCGCGTAACCATCTAACAACATAGTAGTCTTCCATTCGGTAATCAACTTGGTAATAAGCATCTGTGCTAGGACGAGATCGAATAATATCTAAAATAGCTTTTCGATGTTCAAGATTTAGGGTGTATTGTTGAGTTAACTTAAGAGTTTCTTCATAGCTAATTCGCGTAAATGTATCATGTACACTAATTCCATCAATATAGCGTTGATGAAAATCTTGCTCAAATCGCAATACCATTGAGGCTTTGTCCTTATAAAAATCACATCCCCATGCTTCTTTTAACTGAGCGTTCACTATTTTAGGAGTTGGCAGATTGTTATCTTGATACTTCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 22502-22982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000035.1 Aulosira sp. FACHB-615 contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 22502 37 100.0 36 ..................................... CGGAAACTTTAGGAATAGGATTAATAAAAATAAATT 22575 37 100.0 43 ..................................... CAGTCATAGACTGTAGGACAAACAATATAAGCTCCCTCTTCAG 22655 37 100.0 38 ..................................... GTCTAATATAATGTTGCTTGCGTCCGACACAACCTCAA 22730 37 100.0 36 ..................................... ATTCCACGAACTGGGAAAGAGAGTGCGCGGTCATGC 22803 37 100.0 34 ..................................... TTGCTTGTGTTTGCCAAGCTTGCAGTATTCCTAT 22874 37 100.0 35 ..................................... TAAAAGTAGTGTTCCCAATGCTGAATAGCAATTCA 22946 37 86.5 0 ............C........T..........C..CT | ========== ====== ====== ====== ===================================== =========================================== ================== 7 37 98.1 37 GTTTCCAAACCTGATTACCCCGCAAGGGGACTGAAAC # Left flank : CTAATTATTTATGATCTGCCAGATAACAAAGCAGCTAACAAACGTCGCACTCGTTTACACAAATTGTTGTCTGGCTATGGTAAATGGACTCAATACAGTGTATTCGAGTGCTTCTTAACAAACGTTCAATTTGCTACACTACAGACCAAAATAGAAAAATTACTCAAGCCAGAAGAAGATGCTGTACGAATATACGTGCTTGATGCAGGTGCAGTGAGAAGAACCATCACGTATGGTTCGGAAATTCCTCGACAAGAGCAAACAATCGTCTTATGATAGATGAAGGTATCGACTTGATGATTGTCGAGTCAAAGCGGGGTCAAAAACCCTGGAGACTCGTCAAAATCGCCAGAACCTTGACAAAATAATAGTTATAGCGTTTCATAAAATGGGAAAGCTGCAAATAATTTGCAATAAGAGAGGCTGAAAATGACCAAAATTTTCGACTCGTCAAATCGCTTCCCAGGAGGCTTGCCCTGTAATAGTTTCAGAACCGGGCG # Right flank : TCAGTGATCGCCATCCCAGCCGTTACCTCTGCTCATTAATAATTTTCCCCAAAGGGGGATGAAATCGCCTAAAATATTCAACATTCTTCGACTCAACCCATACGATGCCCAGAGCAGCCACAGCCCCCAAGCGCAAGCCTAGAGCTAAATCAACACCGAAAGACTCAGTTCCTACGTGGACAGATGAAACGGAACTGGTAGGCTTAGTGTTTGATTTAGAGGCAACAGCAACGGCTTCTCTCTACTCGCAATATACGATTGGACTCCACGCTTGGTTTCTCGACCAAGTGCGCCAAGTTGACCCAGAGTTATCAGCGTACCTGCACGATGGAGAGTCAGAAAAAGCCTTTAGTATCTCCGCACTGGAAGGGCAACTGCTCCCTAGCGGCAAGCAACTGAAACTAGTCGCCAACCAAATCTATCATTGGCATATCAACGGGCTGTCTCAACGGGTGGCATTGTTTTTCAAGCAGTGGTTGACTATTTTACCGACGGTTATC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCTGATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 311463-312232 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000004.1 Aulosira sp. FACHB-615 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 311463 37 100.0 41 ..................................... GCTCATACACTAAAGACTTTTGCTGCTGTGAAAACTTGGGT 311541 37 100.0 35 ..................................... TTAAAATTCTTTTCAATATCCTTAGCAGCAGCGAT 311613 37 100.0 35 ..................................... TCCGTGGATGGCGATCGCCTAGCTGTAGATGAAGA 311685 37 100.0 40 ..................................... TTTTTTGACCCTACCCATAGAATTACCCATGTTGCCGATA 311762 37 100.0 36 ..................................... TGTAAGTAAGTGCGAGATTCCTGGATGGGATATTGT 311835 37 100.0 34 ..................................... GGTAGAGGCGAATATTTTGTACTTTGATAAATAC 311906 37 100.0 34 ..................................... GTATTCGACATTGTAGACTGGCCTAGCAATTGGC 311977 37 100.0 36 ..................................... TAGAAAAAAGCCAGTAATTATTGAAGCTATGCAATT 312050 37 100.0 34 ..................................... AGAGTATCAGGTAATTCAACCAGAAGATACTCCT 312121 37 97.3 38 .......................A............. CGATAATCGTATTCTCTCCCATACATCACAGTGGTCAA 312196 37 75.7 0 .A.....T...T..AA...C.....A.A....A.... | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 97.5 36 GTGACAACAACCCTTCTAGTACAGGGTGGGTTGAAAG # Left flank : GCAAAAGAATTAGCCCTCTGTGCTTATAATCTCCGCCTAGCTAGGCGAAGTTGACAAATATCTGAACCTTGACAATAAAATAATCAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTAAACTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTATCTTCGGATAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACCCAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTTATTTGAAGGGCTTTGAATTAGGGCAAAATTTTGAAGAGTTCCGCGCAAGTTCCAAATTGCTTGTCCAGTCTGAATTTCATCGTTTTTTCCCAGAACATGATTTTTGAGACTGAGGCTCAAATAGAAAATTGGGAAACATCCGCGCTAGAGGCATCTGGAAACTTTGCCCTACAATGTTTTGGAGCTAGGTTG # Right flank : GATTGACTTGTAATTGAGAGATTGCCAATTTAAATCGAGGGTTGAAAGATAGGAGTTCGATTCTCTTACTATATATTTTTTTGCAAAATCAAGTTTACAAAGCTTATTTGAGCAGTTACTTTAAGAAGTATGCTAATGAAAAGCATATTAAGGCTGACAATAATTTGTCACTAGTTCCCTACAACCGGGATTGAGCCTAAGAAGACAAGAATTTGTCACCAACGACAATAATGTGTCACCGATGACAAATAATAAGTCACTGTACATTTGCTAAAGGTAACAAAATAGTTTTAATAATGGGCAGGAGGAGAATCGAACTCCTATGACCGCAAGGTCGCCACATTTTGAGTGTGGTGCGTCTACCAGTTTCGCCACCCGCCCTTGGGTGCAACTTTCCTAATATAGCATATCCATCAACTTCTCTGCAAGTAATTTTGCGGGTTAGTGTTTGAAAGTGACTAAACTAGGGTCAATATCTTGTATGGATGTGCAGCCACTCA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAACAACCCTTCTAGTACAGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 75887-73639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000013.1 Aulosira sp. FACHB-615 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 75886 37 100.0 36 ..................................... GTTAGCAGGGACGATTGAAGTTGAACCTGTTGCAGA 75813 37 100.0 35 ..................................... TTCTTTGCTGAGTTATCCATGTGGTATGAAAGTTA 75741 37 100.0 33 ..................................... ATGATAGAGTAACCCGTCCTTTCCGGGTGAAAA 75671 37 100.0 37 ..................................... TGAAATGCTGGTGACAAATAAAAAGTCACCAGCAGGA 75597 37 100.0 35 ..................................... AAAAGAAACGATAGGGATTAATGTTTTATTAGTTG 75525 37 100.0 38 ..................................... TTCACAATAGGGGATGCAGAAGTTCGCCCTGGAGAAAA 75450 37 100.0 35 ..................................... AACTCGTCTCCGATTGGGATGATTTCTAAATTTTT 75378 37 100.0 43 ..................................... GAGCGGTGTCCGGCTGGATTGGGTAGGTCAACAATTTCGTAGT 75298 37 100.0 38 ..................................... AGAGTCAATACCATTATTGACAATATCACCTAAATCAA 75223 37 100.0 38 ..................................... CAGGGTGGCTTAAATGGAGGTATCGCTGTACCATCCAA 75148 37 100.0 34 ..................................... TAAATACTGGGAAGATACAAAACCCAGGGTAAGA 75077 37 100.0 36 ..................................... TGTCTATGGTAGATACTTCCCTTTTCCGACTAAGGA 75004 37 100.0 36 ..................................... ACTTTTTAAATTTTGGTCAAGTTCCTCTCTGATACC 74931 37 100.0 37 ..................................... CACAAGAGAACCGAACGGTGAACTTAAATTTGAAGGG 74857 37 100.0 31 ..................................... AAGGCTGTGATGGCGCGACTCTTCCCAAAAG 74789 37 100.0 38 ..................................... CGATAAAATCGAACAACTCCGCCGCCTCTTCAGACCAA 74714 37 100.0 34 ..................................... TAAATATCTGTAACCTACAAGTAGGCTTCCCAGT 74643 37 100.0 41 ..................................... GCACCGGAAATATATCAACTCTGTCGCAGACAGCGAACTGA 74565 37 100.0 37 ..................................... TCAGAAGATATTGCCCAAAGAATGGGATATACCCAAA 74491 37 100.0 37 ..................................... AGGAGCGTAACGCAAACATTCTTCTGGGGTGAGCCAA 74417 37 100.0 32 ..................................... CAATAAAATGTCCCGCCTCAACAGACATTTTA 74348 37 100.0 39 ..................................... ACCAGATCCGATTTTTGATGCTCAAGTACAGGCTCCAGA 74272 37 100.0 38 ..................................... TAGTATTGCACCCGCTAATAATGCAAAGAATCCACCAA 74197 37 100.0 35 ..................................... AACTGCTATCTCTAAATTAGTAGATAGTGCTAAAA 74125 37 100.0 35 ..................................... ATCTTTAACCTTTATGGTAAGGAGTGTTTGATGAA 74053 37 100.0 37 ..................................... AGGTGAAACAATCCCCACATCAAGTAGTCCGCTATAA 73979 37 100.0 39 ..................................... AGGGTGATACTCGGTTCATCCGGCGTTCTGATTTGTGGC 73903 37 100.0 36 ..................................... CTGGCTGCTTACCAACTCGCACAACTGATTTACCAC 73830 37 100.0 40 ..................................... ACTGGTCGAAAGGCTTGCTCGATTCTTTGGACTTGGGCAA 73753 37 100.0 36 ..................................... GTGTTGACTAAGCTTTTTTAGCCTTTGCCCGTTTAA 73680 37 83.8 0 G.....................G...ATC.......A | TG,ATC [73642,73652] ========== ====== ====== ====== ===================================== =========================================== ================== 31 37 99.5 37 ATTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : GTAAATCCCGCCTAGAATTAAAATCCCAGGCTCATAGCTATGGAATACATAGAAAAATTAACCGCAGATGGACGCAGATAAACGCTGATAAAATAGGTGTTTCTGAGGCAATATTTAAAGCTAGTAAAAGTAAAAGTAGGTTGGGTGTAACGAAGTGAAACCCAACATGGATAAGCAATACAGCAATAATACATAAATTACAAACATCGCGCTACCTTGTCTACCCTGTCCTCCTTGTCTACCTTGTCTCTGTTATGTTCCTAGCACCTAAAAATGCGCGGATGGGTGGGTGTAGAAAATCAAGCTTGAGACAAAATCCTTGTATGGCTTTCCACATAAGCTTTTCGAGAAAAATTAAATTAAAATCATCCGCGCACCTTACGCTGTCCAGGTTTCAGCGATTCACTATAAATCAACTGACATTTACTAGTGTTATAATCAACCCATCCGCAAAGCTGAACATTGAAAACCAAATACAGACTGATTTTCCAGCCCCCGCC # Right flank : TTTCTATATCTTTTTCTTATTTCTTACCTTTGCGTCCTTTGCGTTCTTGGCGGTTCGTTTCCATATCTATGTTTTTCACGACTTATTTAGGATTGCTATAGGTGTTTAATGAGTGTATCTTTTTGGCAATCTAATTGTAACTTTAGTTCCCTTTTCCTCTTGACTAGATAAACTAATATTCCCACCATGTAACTCTACACAAGCTTTAGTAATTACTAAACCCAAACCTGTTCCTTGTATGGTGTCAACATTACTACCCCGACTAAAAGATTTAAACAGATTTTCTTGATCTACGAGAGGAATACCAATGCCTTCGTCTTGAATTTCGATAAATATTTCTGATTCTTTACCATTGAGATAAACGATAACATTACCACCATCAGGAGAATACTTGATGGCATTAGATAATAAGTTTAAAAATATTTGGCGCAAAAGTCCGCGATCGCCCCAAAAGTTTTGATAATTGCCTGTCACTTGTAAAATGATTTCATGGCGATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 11467-11806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000045.1 Aulosira sp. FACHB-615 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 11467 36 94.4 37 ...............A.....G.............. AAGGAATTGATTAAGGGAGGGGTCGCAGAAAGGGTAG 11540 36 100.0 41 .................................... CCACGGTTTTTACATTCAGCTTGAAGTTTGTTATAGGTTAG 11617 36 100.0 41 .................................... ATACCTGCGCCGTTCTTCTTCTCTTCCCGCCGCATGGTAGA 11694 36 91.7 41 ..T.................CG.............. TTCTTGTCGTACTTTTTAATGTAACGGGTTGTTATGCCCCC 11771 36 97.2 0 .....................G.............. | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 96.7 40 GTCGCTTCTCTTCGGGGAAGTAGAATTAATGGAAAC # Left flank : TCCTGCAAGAGTGGGATTAAGGGCAAAAACACCGTTACAGCAGATGTGGGTGCTTGGTTTGAGTGGGCGCGGCGGCAACGAATTGTGCTGGCGATGTCTGGTGGTGTTGTGTATACGGTTGATGGGGAGGCTGTTGAGTTGGCCGAGATGATGCGGCGGTTTCCGGTTGGGGGGTAATCTAACAGAGCGGAATTCATCAACTTGGCATCCAGCTTTGATGCTGAAAGTGCTGTAGTTCATATAACTTAGATTAAAAGTTGATTTTAAATTTTTCTAGTGGTTTTCTGCGAATGACAAATTTATGTAAACTTCTACTTTTTCTGCGGCGAGGTAAGCAAAATCTGGAAAGGCTTAATTTCTCGTTGACCCTGCCGATTCCTTTCTGTGCCTAGGTTTTAGCCGATTTCACCTTCTTAATTAAGAGCAAAATCGTCGTATTCACTAACCCCGTCGCAAATGGTGTCTGGACTTTAGATCCCACAAGGGTTTAAAGTAGAGGG # Right flank : CTCGGTCAGATGCACGCTGGGCTTAACTCACTGAGCGATCGTACTCATATTTAACTCCTCCACCCATTTTTTTTCGCGGATCACTAGCTGTTTTTGCGAACTCAGCAAAAAATCAGGCTACAACCTTTACGGCACCTAGCTTTGAGCTATTTTCACTAAAAACGGCATCCGCGAAAACGCCAAAAACCTTATGCAGACTAATTTGTAAGCATTTTTATCATGGGGCAAACTTGACAGGCGATAGCTGAAACAGTACTTTTGATGAAGACCCGCGAATTTGGTGGTTGTAAGTCTTGTATTTCAAGCCTTTCAAGTGCCAGCTGTCTCCACTATCAATGTGGAGGCGAATTAATGGAAACACGCGATCGCTGAACGATGGTAAATGCTTTGCAAGTCTCCACTATCAATGTGGAGGCGAATTAATGGAAACCCAATATCTCTTCGGTAACTTTGCAACTAGCTCTAGTCTCCACTATCAATGTGGAGGCGAATTAATGGAA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTCGGGGAAGTAGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 12128-12827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000045.1 Aulosira sp. FACHB-615 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 12128 37 100.0 34 ..................................... ACGCGATCGCTGAACGATGGTAAATGCTTTGCAA 12199 37 100.0 35 ..................................... CCAATATCTCTTCGGTAACTTTGCAACTAGCTCTA 12271 37 100.0 38 ..................................... TGGGTCTGTTTCGTTGACATCATTTGACTGAAACTTAC 12346 37 100.0 35 ..................................... ATTATTTTGTAGCAGAAAGTCTTGAACTCGCTCTG 12418 37 100.0 35 ..................................... TGTGTGGTATAGCATTCTGGTATAGTGTGGCATAG 12490 37 100.0 41 ..................................... TCAGAGGTAATTCTAATTTTAATCCAGCGAATATTCTGGGC 12568 37 100.0 41 ..................................... AACTTCTGGAGTAGCAGAAGCTACCTGTGGAAGAACCAGGA 12646 37 100.0 36 ..................................... AAGAAGATTTGCATATCCAATGGCTAAACTCGTGAA 12719 37 100.0 35 ..................................... GTCTGTGCATAACTCCAGAATTTCGCCACTCGCCA 12791 37 91.9 0 ..........A.................G.A...... | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 99.2 37 GTCTCCACTATCAATGTGGAGGCGAATTAATGGAAAC # Left flank : TCGGGGAAGTAGAATTAATGGAAACATACCTGCGCCGTTCTTCTTCTCTTCCCGCCGCATGGTAGAGTTGCTTCTCTTCGGGGAAGCGGAATTAATGGAAACTTCTTGTCGTACTTTTTAATGTAACGGGTTGTTATGCCCCCGTCGCTTCTCTTCGGGGAAGTGGAATTAATGGAAACTCGGTCAGATGCACGCTGGGCTTAACTCACTGAGCGATCGTACTCATATTTAACTCCTCCACCCATTTTTTTTCGCGGATCACTAGCTGTTTTTGCGAACTCAGCAAAAAATCAGGCTACAACCTTTACGGCACCTAGCTTTGAGCTATTTTCACTAAAAACGGCATCCGCGAAAACGCCAAAAACCTTATGCAGACTAATTTGTAAGCATTTTTATCATGGGGCAAACTTGACAGGCGATAGCTGAAACAGTACTTTTGATGAAGACCCGCGAATTTGGTGGTTGTAAGTCTTGTATTTCAAGCCTTTCAAGTGCCAGCT # Right flank : CTCATCAACAAAATCATCCTGGTTCGTAATTGCTAACTAGAAAGAAAATATACCCGACTTATTCTGATAAGTCGGGTATTTCTATTTTATGATTCCGCAAATTACTATTCTTGAATTTAACTTTTGAAAAATTTTACAACAACCTGAACGGGGCTTTTAACAATAGCAAACGAGGGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGTTTTATAGGACTTCCCACCCCCCTTGCAGCGGCAGTTGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGAGACCTAGCTGAGTTTATCCGACAAGTGTCCTCAAGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGCAGGATATGGAAAACTATGATCCTTATGCTGATAAAATTGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGTTCGAGTTGATGGATGAGTTGGGAATAACATTTCTGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGTGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTATCAATGTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 13538-13002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000045.1 Aulosira sp. FACHB-615 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 13537 35 100.0 37 ................................... ATTCTTGTTTCCAAAGCTCTTGAGTAGCGACATTGGA 13465 35 100.0 37 ................................... GCTTGGGTATCTGCGTCATCGCTCTCTCTATCTAAAA 13393 35 100.0 36 ................................... CAAGACCACCCTTCTGGTGTTTTGAAACCATCAGCA 13322 35 100.0 35 ................................... AGAAATGTTATTCCCAACTCATCCATCAACTCGAA 13252 35 100.0 39 ................................... AATTTTATCAGCATAAGGATCATAGTTTTCCATATCCTG 13178 35 100.0 35 ................................... TTGAGGACACTTGTCGGATAAACTCAGCTAGGTCT 13108 35 100.0 37 ................................... AACTGCCGCTGCAAGGGGGGTGGGAAGTCCTATAAAA 13036 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 8 35 100.0 37 CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : ATATGTTGAGGATTATCGAAAGTTTTGGTTGTAAGAATATAGAGTTATAGCTGTTTATTGGCATCATTTTTACCAATCAAATCCCGCTTCACAGCAAGAGCATATCACTCGCCGCAAATACTTCACTCGTTCTTGTGCATTAAGCGATCTCATTACTCAAATATATTCCGACTCTCTGGACGGAGACAGTCAAAAATCTGTTGCAGTCTTCGGGGAAGGTCAATCGGCCTTATCTGACGGCGGTGGAGGAGAAACTGTTGAGTGTTGTGGAGGCTGAAGTTAAAGATAAAACTTAACTGTTGATTCATTTCGGGGCAAAAGTCCGAAGCTTCAAACCCTGATTCTTTCGTTGACAGCCCCGGCAGGCTTATTTAGTAAGGGTTTGAGGCTGTGTTTTTCCAAGTTAATTCTCGATTGAGGCTGTTGATTTTGATTAAATTTGACAAGCCCCGAAAATTAGCTGTAGGATTAGCCCCAGGTAAGGCTTTCACAGCCTAGCC # Right flank : CCTCGTTTGCTATTGTTAAAAGCCCCGTTCAGGTTGTTGTAAAATTTTTCAAAAGTTAAATTCAAGAATAGTAATTTGCGGAATCATAAAATAGAAATACCCGACTTATCAGAATAAGTCGGGTATATTTTCTTTCTAGTTAGCAATTACGAACCAGGATGATTTTGTTGATGAGTTTCCTTCAATTCGCCTCCACATTGTTAGTGGAGACTGGCGAGTGGCGAAATTCTGGAGTTATGCACAGACGTTTCCATTAATTCGCCTCCACATTGATAGTGGAGACTTCACGAGTTTAGCCATTGGATATGCAAATCTTCTTGTTTCCATTAATTCGCCTCCACATTGATAGTGGAGACTCCTGGTTCTTCCACAGGTAGCTTCTGCTACTCCAGAAGTTGTTTCCATTAATTCGCCTCCACATTGATAGTGGAGACGCCCAGAATATTCGCTGGATTAAAATTAGAATTACCTCTGAGTTTCCATTAATTCGCCTCCACATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 4 26183-25567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000045.1 Aulosira sp. FACHB-615 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 26182 35 100.0 40 ................................... TTAATCCAGCCGCCAAATCCCCATCTGCATTAGGATATTT 26107 35 100.0 39 ................................... AGGAATCGCCTTGCTCGTAAAGAGCAGCAAGAACGATTT 26033 35 100.0 36 ................................... AATTCGGATATAATGTCATTTACTTGGTATTGTTGT 25962 35 100.0 39 ................................... TATCTAGATTTTGGCGAGTGCTTTCTAAAAATGTTTCCA 25888 35 100.0 39 ................................... AACAAAATAAACGTTTGAGCGATGAACTCGCATGTATGA 25814 35 100.0 35 ................................... AACATTAGCCATGTATCGTCTCCTGATACATTAAG 25744 35 100.0 38 ................................... TACGAACTGGGTATTGAAATAGTAACCGCCGTTTCCAT 25671 35 100.0 35 ................................... CACTTAGAGCGTAGGCTTGAAAGTGCTGAACATTT 25601 35 94.3 0 ..........T.......................T | ========== ====== ====== ====== =================================== ======================================== ================== 9 35 99.4 38 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GTTTCGTGCGTTAGTTGTTGATTCTCTAGTTGTATATTTAACAAATCGAAACTTATTTACAATTGAGGATTTTACCTCTCCAGATGAGCGCAATGGGGTGTATTTTCAACCTCATGCGCTGAAAAAATTTCTCAAATACTGGGAAGAAAGGCTACAAACAGAAGTAAATCATCCTCATACAGACTGTAAATTACCTTACCGCCGTTGCATTGAGTTGCAGGTACGAGAGTATATTTCTTGTTTGATGGGTGAGGTTGAAATATATCGACCGATGATTTGGGATAAGTAAAACTTAACTATTGACTCGTTTCGGGGCTGAAGCATAACGGCTGAAACCCTGATTATTTCGTTGACAGCCCCGGTCGCTTTGTCCAGTAAGGGTTTTAGCCTATGTTTTTCCAACTGAATTTTCAATTTAGAGTCTCCATTTTGAACAAATTTGACAAGCCCCGAAAATCTGCTGTAGGATTGCCTCTAGGTAAGGCTTTCAGAGCCTAGCC # Right flank : AGTAGTTTATGAACCCTGGCTAATTTCACAAGCCAGGGTTATTTTTAGCCTAGAATTTTGTCTGGTTAATCAAGTTATATACTGAGCAAAACTTATATACAAAGTTATATACAGAATAATCTTATATATATAGTTGGATATATATTCATCTGCGAGTATGTAATTAAGTAAAAGCAAAGACAAAGAACAACATTTTTATCTTTAGTTTTTACTATTAAACATTTACTTAATTCTAGTTATGACTACAATTTACATCACTGAACAGGATGCAGACCTGAAAGTGCAATTCAATTACCTAAAGGTATTTCATGAACAAAAACAATGTGTGAGTATTAGGATTAATAATGTCAGCCAAATTATCGTTTTTAGCAATATTAAATTGCCAAATGAAGTAATAAAAGCTGTAGTAGCGCATCAAATTCCAGTCTTGTATATCACTCCATTCGGTGAAATCATTGGCAGGTTAGAGAAAACCTCACAACGACAATATAAATATTTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 34560-33433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000045.1 Aulosira sp. FACHB-615 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 34559 37 100.0 34 ..................................... AATACATTCCAGAAAGATACTCAATAAAAATCCC 34488 37 100.0 34 ..................................... ATAGATTCACTAGATAAAGAAGGGGATACTATCG 34417 37 100.0 35 ..................................... TAACTTTTGAAGATTTGGACAATGCCGAAGATTTG 34345 37 100.0 35 ..................................... TCCACGAAAAGACTCTAAACTTGGTGAGACTAAGA 34273 37 100.0 34 ..................................... TAAGCGCACACATCCTTTGGAGGGATACGAGAAA 34202 37 100.0 34 ..................................... ATGATAAAAGAAATTTTTCCTTTTTGTTCGCTAG 34131 37 100.0 37 ..................................... TTTGCGCCGTTCGGCCGGAATACGTCAATTCGCTTTC 34057 37 100.0 43 ..................................... ATAATTGCTTCTCGCCGCAGTATTGGCGCGGGAAAATTTTGTA 33977 37 100.0 35 ..................................... CAATGAGTGTTAACTTATTATTCTCAACCCTCAGC 33905 37 100.0 36 ..................................... CCTTCAACACCTTCAAAGGTTATTAACTTTCCTGTG 33832 37 100.0 34 ..................................... CGAGTGCAGTTTATACAATGGTGAACTTGTCCCT 33761 37 100.0 38 ..................................... GATGTTACTAAATTAAATGAGATATTATCTTCACTAAC 33686 37 100.0 34 ..................................... TGTCATAAAATGACAGAAAACGGATTCGATAGTA 33615 37 100.0 34 ..................................... CACGAACGTCAGCACAACGATTTACGGAAGCATC 33544 37 100.0 38 ..................................... CTGCCCTGCGCTAAAGACTGAAAAACGTGAACGTGGCG 33469 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 16 37 100.0 36 GTTTCCATTAATTCGCCTCCACATTGTTAGTGGAGAC # Left flank : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAACCTTTTGTAAGTCGTCTAACTGTTATCGTATTGTCTTCTTTAAACTTCTTCGGAAGTTGAATTAATGGAAACTTGTTGGCGTTGCTGCCTCCACCACCATTTTTATTGACTTTAAACTTCTTCGGAAGTTGAATTAATGGAAACTGAGTCTGCGGACTGTTTCAGTCCGGGAATGATTATGTCTTTAAACTTCTTCGGAAGTTGAATTAATGGAAACGAACGGAGGAGGAATGGTGCTAAAAGTCGGCACCAAAGGGCTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAACCTCGGTTGCCATTGTTAAAAGCCCCGTTCAGGTTGTTGTAAAATTTTTCAAAATTTAAATTCAAGAATAGTAATTTGCAGAATCATAAAATAGAAATACCCGACTTATTCTGATAAGTTGGGTATATTTTCTTTCTAGTTAGCAATTAAGAACCAGGATGATTTGGTTGATGA # Right flank : TGTTGGCACTTGAAAGACTTGAAATACAAGACTTTTAACTACCAAATTCGCGGGTCTTCATCAAAAGTACTGTTTCAGCCATTACCTGTCAAGTTTGACCTGTGATAAAAATGCTTACAAATTAGTCGTCATAAGGCTTTTGGCGTTTTCGCGGATATCATTTCTAGTGAAAATCGCTCAAAGCTAACTACTGTAAGGGTTGTAGCCCGAAATTTTACTGAGTCCGCAAAAACAGCTAGTGATCCGCGAGAAATGCTGGTGGGAAAGTTGACAAATTGACCAGTGCATCTGTATTTCCCTGGCAAATCCAAGCTCCCCAGTAAAAGGGATGTTTTAAGGGAGTGTCATCTTCTTGACAGTCAATTAAACTATTTTCTGATAACTCTGTAACTGCTAAAAGTTCTTTTAACACTTCCAGACCCAAAACTGATTGGCGCAATTGTTTAACAGTGATGTTACGTATATAATTCTGAGCGTCATGTAAAGCCTCCGCCCGACTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCGCCTCCACATTGTTAGTGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 35995-34734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000045.1 Aulosira sp. FACHB-615 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 35994 35 97.1 38 ..........A........................ TGGATACGTGGTCAATCATGTAGAAAACGATGAGAGCC 35921 35 97.1 36 ..........A........................ AGGCGGTACATTCCGTACCTACACAGATTTCCACGC 35850 35 97.1 37 ..........A........................ AAAAAAGAAAATGCAAAACGCGAAAGACCGTCCTACC 35778 35 97.1 38 ..........A........................ TGCATCATAAATCTTTCCTGAAAAATCAAGAACGATTC 35705 35 97.1 36 ..........A........................ TTCACATTTTATTTCAATAAAACTGCTATTAACTAC 35634 35 97.1 38 ..........A........................ GAAATAGTATTCCCCATACAAAGGCGATGATCAAAAGC 35561 35 100.0 36 ................................... CCTGTTGCCAAGGCGAAGGATATATAGCCAAAATAC 35490 35 100.0 38 ................................... CAATTTAAGAACTCGACGTTCTCGGCATAATTTCTTGA 35417 35 100.0 35 ................................... GATCGCTGGCCCCTTTCAGGGATTCATCAATAATT 35347 35 100.0 36 ................................... CAGGTGCTGAATTTGTTGCTCTGCTTGCAATTTTTC 35276 35 100.0 38 ................................... AAACCTTGTATCAAATAGCTCACGAGCAAAAGCATCTA 35203 35 100.0 38 ................................... AAAAGCTGGTTAACTTCCTTGTGTTTCCACAATGATAA 35130 35 100.0 36 ................................... AGAAATTTATTTTTTCAAGCAGGTCTTCAATCTTGC 35059 35 100.0 36 ................................... CTTTTGTAAGTCGTCTAACTGTTATCGTATTGTCTT 34988 35 100.0 37 ................................... TTGTTGGCGTTGCTGCCTCCACCACCATTTTTATTGA 34916 35 100.0 38 ................................... TGAGTCTGCGGACTGTTTCAGTCCGGGAATGATTATGT 34843 35 100.0 40 ................................... GAACGGAGGAGGAATGGTGCTAAAAGTCGGCACCAAAGGG 34768 35 97.1 0 ..................................A | ========== ====== ====== ====== =================================== ======================================== ================== 18 35 98.9 37 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : ATGGTAGGATTTCACCGAAAATGTGAGATTGCGCGATCCGGTTTATAATCGCAGATATAGCTGATGCGCCAGATAGCACCAATACCCACAGAGCGCACCCTCACCCTCAAGTCATCAAAGTATGTTCCCAAGCGATTACTGAAGCGCGTTCAGCAGATGGAGCAAGAGAAGGCGGCAGTTAGGAAGATTTTAGGGTTGTTTGTGGTGATAATCGGGTTTCTAGAAGAGTTTGTTTACCCACCGATTAAGCTACTATAAGCGTAGATTGGTTAGATTAGTGATAAGTAAAACTTAACTGTTGAGTCATTTCGGGGCAAAAGCCTAGAGCCTCAAACCCTGATTATTTCGTTGACAGCCCCGGCAGGCTTATTCAGTAAGGGTTTGAGTCTGCGTTTTTTCAGTTTAATTCTCAATTGAGGCTCTTGATTTTGAGTAAATTTGACAAGCCCCGAAAATCTGCTGTAGGATTAGCCCCAGGTAAGGCTTTCACAGCCTAGCCC # Right flank : CCTCGGTTGCCATTGTTAAAAGCCCCGTTCAGGTTGTTGTAAAATTTTTCAAAATTTAAATTCAAGAATAGTAATTTGCAGAATCATAAAATAGAAATACCCGACTTATTCTGATAAGTTGGGTATATTTTCTTTCTAGTTAGCAATTAAGAACCAGGATGATTTGGTTGATGAGTTTCCATTAATTCGCCTCCACATTGTTAGTGGAGACAATACATTCCAGAAAGATACTCAATAAAAATCCCGTTTCCATTAATTCGCCTCCACATTGTTAGTGGAGACATAGATTCACTAGATAAAGAAGGGGATACTATCGGTTTCCATTAATTCGCCTCCACATTGTTAGTGGAGACTAACTTTTGAAGATTTGGACAATGCCGAAGATTTGGTTTCCATTAATTCGCCTCCACATTGTTAGTGGAGACTCCACGAAAAGACTCTAAACTTGGTGAGACTAAGAGTTTCCATTAATTCGCCTCCACATTGTTAGTGGAGACTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : CTTTAAACTTATTCGGAAGTTGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 126715-128899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000005.1 Aulosira sp. FACHB-615 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 126715 37 100.0 38 ..................................... TTGAAATCGATGAAACCGCGATCGCTCCAGCTAGTAAA 126790 37 100.0 41 ..................................... GTAAATAGTTAATCTTGCTTGCTCGTAGGCATCGGATGTAG 126868 37 100.0 34 ..................................... TAGCTGGAAACTTGCCTTTAGCTGGAGCAGTTCG 126939 37 100.0 39 ..................................... GCAGCTAGTTTCACTACGATCACTACCTCTGGCGCTGCA 127015 37 100.0 40 ..................................... TTAACGCAGAAATACAAGCCATGCTTGACTACAAAGATGG 127092 37 100.0 39 ..................................... ATCCAGGACGACCGGGCAAGGATGGAAAAGACGGTAAAG 127168 37 100.0 34 ..................................... CCAATAATAGTATTTCCCTTTTTCCTCCCATAGA 127239 37 100.0 34 ..................................... TTATTGATGAACAAAATATAATACTGCGGCGATC 127310 37 100.0 35 ..................................... GTTGTATTGGGAATCGGTTAAGCTAATGGTTAAAG 127382 37 100.0 36 ..................................... CTACCCTCCAATTGATGCTATAATTAATGGCAGTTG 127455 37 100.0 42 ..................................... CTTTAAGTTAACCCCAGCGATATCGCGGTGTAGGGTGGTTGC 127534 37 100.0 37 ..................................... CCGTAGCCACCAGATGAGAGCATACCTACCGCAAGGA 127608 37 100.0 39 ..................................... TTCCAATTACCTGTTTGCCAGATATCCCGATTATGAGAT 127684 37 100.0 34 ..................................... GAACAACCATTGAATCCTCTCTGAAACATCCTCT 127755 37 100.0 34 ..................................... ACGCGCCGATCTTTCTTTACTTCCCAAAAAACAG 127826 37 100.0 35 ..................................... GTTACCATTTAAGAGTTTTAGATTATCCCCAAAAT 127898 37 100.0 38 ..................................... ACATCAACTTACACTGCCTTATGAAAATTTTGTCTGTA 127973 37 100.0 41 ..................................... ATCTACCAAGTAAAACAAATCACAGGGAAAGCGACTTGGAA 128051 37 100.0 34 ..................................... CAACCTGTAATATCCACGCTTGCAATATTCCTTT 128122 37 100.0 32 ..................................... ACTTGCTCCATTCAGCAAATTAAACAATCTGC 128191 37 100.0 39 ..................................... TATCACAGCTTTCCTTTTCATTTCTGCACCTCTGGTAAC 128267 37 100.0 35 ..................................... ACATCATCACGATTGTCAGCGTTATTTGCTTATTT 128339 37 100.0 38 ..................................... TTATCCTTAATTAATTGGTTGGTTTGTTTTTTAGCAAC 128414 37 100.0 38 ..................................... GCACCCTAGCCACACCCATACAAAATAAGCCATTTTGC 128489 37 100.0 37 ..................................... TTTACCATTGATACCATCAAAACCATCCCTACCATCT 128563 37 100.0 41 ..................................... AAGCCCAGTCCTGAACATTGGGAAGAATGGCGAACGGCTAA 128641 37 100.0 37 ..................................... TCAAGGTTCCGTTTTTTTGGTAGTACAGTGCTACTGG 128715 37 100.0 37 ..................................... TCAGCTTCTAAATAATCCATATCTGTACAAGGATAAG 128789 37 100.0 37 ..................................... GTCTTGACCGCGATCGCAAAATACATCATCTTCAAAC 128863 37 89.2 0 .C.......T.......C..............A.... | ========== ====== ====== ====== ===================================== ========================================== ================== 30 37 99.6 37 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : ATGGACTGTTTCTGTGGTGGCTTTTAAGATGTGATGCGTCATGAATAGAGGAATCAAGTTTGATTTCTCAATTTACTTGTGTATGCAGGGCGTAGGGAATAGGAAGTGGGGAGAAAATTATTTACAAAAATTTTTCTACTTACGCTTGACAGGTATACCGCCAACCCCAATGAAGTCATGAGTATTTTAATCCGCCAAATCTTGATGTAATATCTAGATCCCCGACTTTTTCAAAAAGTCGGGGATCTAAACAGCACGACAAAATTGGTCAAAATGCGCGGATGGGTAGGTGTACAAAATCGCCCTTAAGCAAGAATGGCTGGATTCCTTGGAGGGTAAGCTTTTGCAGAAAAATTTAATTAAAATTGTCCGCGCACCTTACATAGTGAAGGTTTCAGCGATTTCATGTAAATCAATTGACATTCCACCATGTTAGAATTATCCCATCCGCGAAACCGCACCTTGAAAACTAAATACACCAAGCTTTTCCGGCTCCCGCA # Right flank : CCATCGATTTACTCTGTATTTATTATATGGGTCGCCCGGGATTCGAACCCGGAACTAATCGGTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCGACCCTTTTGCTTTGTTTGCAACTTTGCCATCATAGCACAAACACCATTGGATTTGTAAAGGGGTTTTTAGAAAAAACTTGCCGTCAATCTAACAGATGCTTGATAGCTGGCTCCTGGCTCTACCACAGTCAAATTTTCGCCTGTGTTTAGAGAATTGCGCGGCGCACTCCAAGGTTCCAAACAATAAAAGTCTTTGCCCTTGAGCGTCCAAAATACCACGATGGGATATTCATCGCCGTAATCTAAAGTCAATTTTAATTTACGACTGTTGTCTGTGACTGTAGCTGAATTAGCAGTTAGTTCCTTAAAGGCAACATCAATCTCATCCAAATTGAAATCAAAATTCCCACCAAAGAATTTTCTTTCCTTAGTTCTCTGGTCTTGATACTCACCAGCCGGAATCGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 24683-25384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000052.1 Aulosira sp. FACHB-615 contig52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 24683 37 100.0 38 ..................................... ATTGGATCAATAGGGGCTTTTCCTGTTGATGGATCTAC 24758 37 100.0 34 ..................................... TCAGCAAATCGTCAGGATTTACTGAAAAAGTTTA 24829 37 100.0 43 ..................................... TCTCTATATATGATGAGAAAATTGATGCTCCCCGCCTTACCTG 24909 37 100.0 36 ..................................... TTACGCTGGTCTGATACAAAGATAGTACAGTATGAC 24982 37 100.0 36 ..................................... ATTTTACGATAATGGTCATCGAAAGAACAATCAAGT 25055 37 100.0 35 ..................................... TCAACGACTGGATTCTAGCGATCGCCAGAGAAACA 25127 37 100.0 38 ..................................... TCTCTATGTGTAAGTCCATGTTTTGTAAAAGTAGTCTA 25202 37 100.0 35 ..................................... AAACCATTTATCAACCCCATGCCCTAAGTCATTAA 25274 37 100.0 35 ..................................... ACTTCATCACGTCATACTTGAGCCAATTCGTAAGA 25346 37 94.6 0 ................................T...A | AA [25377] ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 99.5 37 GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Left flank : AGCGAAATGACTGTTGGGGTGCAGCATCTCAAATCTTATGATTACTTACCCCAGGAATGTCAGCAGATGCAGGAGATATGCGATCGCATCACACGGTTGCAGGAGAGCGAGAATTTGGAAGAAGCTGGTAGGGCTATGTTGAAGTATTTGGGGGAACTGAAGCGATCATATTTGACTGATGTGGAAGAAAAGCTGCTAAGTGTGATTGAGCAAGAATATGGGGTTACGGATTGATCTAAAGTGTAAAAAAACTCGACAATAGAAAATACTCATCTTATGATTAGGTAATCAGCTTGATGTTTGGCAAGTCGAAGCGGGGTCAAAAACCCTGGAGACTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCACCAATCAGGGAAGTTGAGAATGAGTTGCAATAATAGCGGCTGAAATCGACTCTTTTTTGAGGTTCGTCAAATCGCTTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGCTTCGAGCA # Right flank : AATTCCAACGCGATCGCGCTCTGCCATAAGTCCCCGAATGGGGATTAAAAAAGAAGCAAACTCTTAGCTTGCATCGCAAAGCTCTTGAATCACTTGTGAAAACTCCTGGGTCAAAAAGTCGGAACCACCTGCACTATAAACTTGCTGCAACTGTTGGTAAAACCATAATGTTCCTTCCCTGCCAGTCTTAAACTGTTGCCAAATGCTAGTGCCATGTTGTCGTAAGTCTGCCAATAATGACCTCGCATTGTGCAGCTTATCTGCCAAAGATACCCGCCGGATTGAGGGTGAAGCACACCGCAGATTTTCTAAATACTTTTGCTTGCGTTCTTGCCAAGGTGGTTTAGGGTATGTGTCAGATTCGGTGCAGCCATCAACTATTGCAACGACTGCATCACCGAAACGCTGGCGGATTTCTTCACGAGTGGATTTGCCTCCTTGGTCTTGTTGAACTAAGCCAGAGAATCGCTTCTTCTTCAGTTCCGCCAGCTTCCAGTACG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 348308-345782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000007.1 Aulosira sp. FACHB-615 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 348307 37 100.0 36 ..................................... TTATACTTATACCCTGGAGCAAATAAAGATAGTCCG 348234 37 100.0 39 ..................................... TTGTTGATAGTAATCTAGTAAAAGGTAGACGCAATTTAA 348158 37 100.0 36 ..................................... ATTGAAACTGAATAAGGCGTATATTAGCTCTAATTT 348085 37 100.0 35 ..................................... TAATTTTTCTAAAACTTGCGGTATTTTTGTTTTTA 348013 37 100.0 35 ..................................... AACCAAGGACAGTTTCTAGGGAGAGTGATTCACGA 347941 37 100.0 35 ..................................... GCAAAGGATTCCACGGTTGCCCGTCAAACAATACT 347869 37 100.0 34 ..................................... TTGCTACTTCCAAAAAAGCCCGTTCTGGTGATCG 347798 37 100.0 36 ..................................... TAATGAACGCAATCAAGTAATTAACAATCAGGCGCA 347725 37 100.0 35 ..................................... AGCAAAAAATTCTCACTACAAAAACAATTATTGAA 347653 37 100.0 39 ..................................... CTCAAATCGGTAAGGATTTTCAAAAACAGATTTTAGATT 347577 37 100.0 37 ..................................... AACATTTCAATTGTTCAGAGTTTGGAAATTGTGGAGT 347503 37 100.0 31 ..................................... GCGCTGCTGTTTCCTGGTGACCCGGTAAGAG 347435 37 100.0 35 ..................................... CCGCCAAATAAAGATAATTGACCTTCATTGGAACG 347363 37 100.0 37 ..................................... CAAAGTATTCAACCACTACAAGTTTTTTACCTCTAGG 347289 37 100.0 40 ..................................... GATTTAGGCGGCGCTAAATGCCAAATAGCCTACGAAAAGA 347212 37 100.0 36 ..................................... ATTGATGACGCGGAAAGATATGGTAGGGCTAATGGA 347139 37 100.0 37 ..................................... TAGCCGAAATCGTAGCACCTGCGGCGTGACTCCTAGA 347065 37 100.0 38 ..................................... TACAGCGATTTTATATATGGGTTAGGCGAGTTTGTCAC 346990 37 100.0 36 ..................................... AGATTGATATCTTTGTGCTGCTTTTCTTCTAGGTGG 346917 37 100.0 36 ..................................... TTATGAATTTAAATCCTTACCAGACTCAGCAGTTAG 346844 37 100.0 35 ..................................... GTCTGTGCATAGATTACAAAATCCTCCGCTGTAGC 346772 37 100.0 35 ..................................... AATGAATTAGGAACCTATAAGAATGGAATTCCTAG 346700 37 100.0 37 ..................................... CTGTGCCTTTTGCGGAAGCCGCTAAACCTACATAAGC 346626 37 100.0 35 ..................................... GTGGATTAAAGAGGGAACCGTAAACCAGGAACTAG 346554 37 100.0 42 ..................................... AGCCACGATTGAACTACGCGAAAAAGAGATAGAACCACTAGG 346475 37 100.0 35 ..................................... ATTTGTATATTTGTACAGCGATCGCTGATCTTTTT 346403 37 100.0 38 ..................................... CAATGCTCATACGAGTTTCGCCCGACTCCGCCACGATA 346328 37 100.0 37 ..................................... AGGTGGGAATTGGAGGGTGGTAGTGCTGGATTAAGAT 346254 37 100.0 34 ..................................... TACTTTTCTCAACTATAACAAAGGGATACGATTA 346183 37 100.0 40 ..................................... TTACCGAAGGCGGATTACCAAAAGGCAAACAAAAGTCGAA 346106 37 100.0 33 ..................................... TTTGACACAAGCGATCGCCGTGCCACATGTAAT 346036 37 100.0 41 ..................................... CCGCCATTTCGCTGGTATTAGGCTTATCTGTGCGTACCGCA 345958 37 100.0 34 ..................................... TGCATTTTCACCCAGTAATTTACCTGCCAGCGTA 345887 37 100.0 32 ..................................... CTGCGATCGCAAGATAGCTTCGTCTCGTTCGG 345818 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 35 37 100.0 36 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : AATACATAATCCTCTATCTTAAGAGAAGTTGAGGCGATCGCTTTTGCTGAGTCTTTGTTATTGCAAGCCGCTAACCACCGCCGCCGCGAAAGTTAACTCAGCAGCAATTGTAGGAACTGGCTTGATTTTTGAAATTATCTTTAAAGGCTGGGAGTAGGAAAGAGGATTTTTTTGGTGTACTGTATTTTTTATGCAAATCCAATGTTGTTCCTAATAGATCACCGACTTTTTGAAAAAGTCAGGGATCTGAACAGTACTACAAAATTAGTCAAAATGCGCGGATGGGTGGGTGTACAAAATCGCCCTTGAATCAGAATGGCTGGATTCCTTGGAGAGTAAGGTTTTGCAGAAAAATTTAATTAAAATCGTCCGCGCACCTTACGCAGTATGAGTTTCAGCGATTTCATGTAAATCAATTGACATTCCACCATGTTAAAATTATCCCATCCGCGAAACCGCACCTTGAAAACTAAATATAGTAAGCTTTTCCGGCTCCCGCG # Right flank : ATTATCGCTCATGGAAATTTTCAAGAGTTAGTAAATGATTGCAATTTAAACGATGAATTGTCTCACACAGAGGCACAGACGCGACAAGGCGTTTTATGTTTGAGTCCATGAAATTTCATCTCTTGATTCAGCAATGCCAAGTCTTTATTAGTCAGACGATGGAGTTAATTATTCAAGGTGTTGGCAAAAATTAAAACGGGATAGGCGAACCTATCCCGTCAACATATACTAGCGTTTAAACTTTAACGCTGAGTTTAAGTTCCACTAGTCCAAGAGTTGATGTACTCAATTTGATCTGGTGTCAAGCTATCGATATAAATGCCAATAGCTTCCAACTTCAACCGCGCAATTTCTTGATCTACCTCAGTAGGAATCGAGTGTAAACCAGGTTCCAATTTACCTTGATTCTTCACCAAGTATTCACACGCCAAGGCTTGGTTTGCAAAACTCATATCCATTACCGCGCTAGGATGTCCTTCGGCGGCGGCGAGGTTGACTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 61335-59842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000006.1 Aulosira sp. FACHB-615 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 61334 37 100.0 35 ..................................... ATCAATGCAGTTTTTATAGATCAGGTGCTTGTAGT 61262 37 100.0 42 ..................................... TGCACCACGCCCAGCGCCGCCGCCTCCAAAGCACTCCACTTC 61183 37 100.0 40 ..................................... GTAGGCGCGTATGGTAGGAGCGATCGCCCAAGGTGGCGAT 61106 37 100.0 35 ..................................... AAGTGCAGCTTCTTTGTCTAGCCTCAGTGGTGTTT 61034 37 100.0 38 ..................................... TTTTTCCTAGTGTTCCCGTGATTGGTGGTTGCGATTCT 60959 37 100.0 34 ..................................... ATTTCCAGAGATGCTCTGCACTAGTCATCTCTTT 60888 37 100.0 35 ..................................... CAAATGTATCTTCACATTTTAATTGTTTTGGAGCA 60816 37 100.0 34 ..................................... ATTAGATTATAACTTTTATGCTAGAAAAAATCAA 60745 37 100.0 36 ..................................... TCACCTAACTTTTTACCGATAAGTGGTGCAGCAACT 60672 37 100.0 35 ..................................... ATGATAATGATGTATGGCTCTCTAATAGCTTTATA 60600 37 100.0 39 ..................................... TCAAGATGCGCCCCGGTTGTTCTAGCTCCAGAATTACCA 60524 37 100.0 34 ..................................... CCAGACTTCTCAGGTTTATTGCTGTTCTATACAA 60453 37 100.0 34 ..................................... AACTATAAACAGCAATGCGCGATCGCTCATAAAG 60382 37 100.0 35 ..................................... GTTATGGCTAAATTAAATGCCAAAAGCTAAAAAGG 60310 37 100.0 33 ..................................... ATCGCTCTGTTCAGCCTCCGCGATGGGGCAACT 60240 37 100.0 34 ..................................... CTTGGCAGAGTTGCGTAAGCTTGCCAAGCAGTAC 60169 37 100.0 33 ..................................... CAGCAAGGTTTATTGGTTTATCAGGGAATTTTT 60099 37 100.0 35 ..................................... GAAGCGGCAAAAAGTTATTGCGTGAAAACTACAAA 60027 37 100.0 39 ..................................... CTTGACAAATGGATGGATTAAAATATTGTCGGTTCTCGT 59951 37 100.0 36 ..................................... GTCAGACTAATAAAATTTCCTTCATCATCAAGCCAA 59878 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 21 37 100.0 36 GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Left flank : TTACTTTTTGGTAAATGGCGTATTAACAGCGAGTGGGAAAAAATTTCGATTGAGTTTAAAGATGATATGACTTATACCCAAACCAAAACACAGACATATATTTTAGCTAAACCTAAAGAATTATTCACTGGTGATAAATTTACTGGTGTATGGTATGTCAATTATGGCAGATTATTTTTAATTGTTAAAGCTGCGCCCCAATCTATGTTTAACTTCAGTTTACCAATATTACATAAAATTAATTTGGCAGATATATTAATCACTTTCATCTCTTTGTTTACGGCAGAAAAGTATGAAATAGTTAAAATTAATCAGACTGAATTGATTATGAAAGATGAAAAGGAATCAATTATTGGGAAGAAAATAATTAGGAATGCAAATTTTTAGAGTTATACTTCATTTAATGTAAAGTTTCACGTATATTGATCCCCCTAAGTCCCCCTTTCTAAGGGGGACTTTGAAGCATTTTCCCTTGTAAATGTAAGTCCAACTCTAAACTC # Right flank : TGCGGAAGCCGGAAAGCTAGTGTTTATTTGGTTTTCAAGGTTCAGTTTCGCGGATGGGTTGATTATAACAGTATCAAAAGTCAGTTGATTTGAGGAAAATGGCTGAAACCGTTGCTGTACAAAGTGCGCGGGTGATTTTAATTGATTTTTTCGGCAAAAGCTTGTGCTGAAAGGGAGACAGCTATTTTTCCTCAAGGCGAATTTTTTACACCTACCCATCCGCGAATTAGGCAAAGAAAATGCTTTCGTCGCGGGGTTGTTCGCCACCGATGCGTTCGATTTTATCAAAACAGCAGGCGCAGAGAAAGTAAAAGCGGATGCTGTCGGTATCTGGTTTAATGAGTTTGTGCAAACGCGATCGCAATTTGGCATATTGAGTCTCGGTAAGCTGGCACTCAAACACACTGTACTGCACCCACTGTCCATAAGACTTTAAAATTTTATGGATTTTGGTACGGCGTTTATCTTCTGGGACATCGTAAGATACAATGACTTTCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 163582-161922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000006.1 Aulosira sp. FACHB-615 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 163581 36 100.0 37 .................................... AAAAATCAGACGGAGACTGATTCATTTTTAAGAGAGT 163508 36 100.0 40 .................................... ATGATTTTTTCATATTTCATGGTGCTGACATCAATGGCAG 163432 36 100.0 42 .................................... AGACTGGTGTCCTGTTCCAGAACAACTAATCGGCGATCGCCG 163354 36 100.0 44 .................................... AGAGCAAGCAAGGCAGTTGGCGTTGGTATCTAATGCCAACCGTT 163274 36 100.0 35 .................................... ATCAAGATTGGTGATCCGTCTTGCGGACTCTGATG 163203 36 100.0 35 .................................... AAGAACGCGTTCCTGAAGATACTTGAGATTGATTC 163132 36 100.0 38 .................................... ATAACTTATCAGAGAAATTAACCATGTCTAATCTATCA 163058 36 100.0 34 .................................... ATAGCTGGAAACTTGCCTTTAGCTGGAGCAGTTC 162988 36 100.0 44 .................................... AAGATTTCAGCAACTGATTATATCTCATTGCGTAGGGTTATAGA 162908 36 100.0 35 .................................... ACATAATCACCATCCAATTTGCCGGAAGCGACTAC 162837 36 100.0 34 .................................... CCACCAGCAAGCGATCGCAGGTCAGAAATCATTC 162767 36 100.0 40 .................................... CTATCACACTCCTTGTGCCAAATAAATGATATCAAATCCG 162691 36 100.0 37 .................................... CGGCACACTACCGTTTTTCCTTGTATACACACACCAG 162618 36 100.0 34 .................................... CGAGCAACTAAATTTGTTTTAAATTTTAAAATGT 162548 36 100.0 38 .................................... CTCATCAATTTTTGTTGGTGTTTTTGGTAATCTATAAA 162474 36 100.0 35 .................................... CGATATTAAGGTAAAACCAACGCCATCCAAGGGTG 162403 36 100.0 36 .................................... CCTGTAGCTGCTAATTGCAAACGGTTTTACTTTTAA 162331 36 100.0 37 .................................... CGCATAGCGAGTGGTGACTTTGCTCAGTAGTAGAATT 162258 36 100.0 37 .................................... CAAATGTAACTACAACAGGAGAGTTATACATATACAT 162185 36 100.0 38 .................................... CAAGGCGCATAATATTGATTAACACTGGCAACGCGATT 162111 36 100.0 42 .................................... CTATTAAAAACTTATCTTTATCAATTTTGATAGCCTCATAAC 162033 36 100.0 40 .................................... CTCAACTACATTTTGAGCTATTAACAGCAGGCGATCGCGC 161957 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 23 36 100.0 38 GTTAAAATCTCACTTAATCCCTATCAGGGATTGAAA # Left flank : TTTCCATCTGTAAGTTGAATAATGGTATCAGGTGTGGCAACCTTGAGGGCTTGGCTAATGGTTTTAAATGGCGCTTGCTGGCTACCAGGGTTGGTACTATTGCCAGTTAAAGGATTTACGTAAAATTTTTGAGGCATATTTATACCGCTAAAACATAGTCATACTATTAGCTCTAACTGGTAAAATGGCTAGTTATTGCTAAAATTTGCAACATTGACTACCAAATTTAACGGCTAAATTCCTGAAATTCCCAGATAGACAAACTTACCCCAAACACGCGGATAGGTAGGTGTACAAAATCGTCTTTGAGGAATAACGGCTGGATTCCTTGGAGGGTAAGCTTTTGCAGAAAAATTTAATTAAAATTATCCGCGCACCTTATACAGTCTGGGTTTCAGCATTTTCATGTAAATCAACTGACATTTCATCATGTTAGAATTATGCCATCCGCGAAACTGCACCTTGAAAACTAAATACAGCAAGCTTTTCCGGCTTCCGCA # Right flank : CCTTGTATTACTTGCTTGCTGTTGCCCACAAGGATGTTTCTTGTTTCGCGCAAAGGCGCAAAGACGCAAAGAATCAATATTTACTCTCTGCTAAAAACCTTAATTCATCCCGCAAATAAGCAACGCTCAAAAATTACTATTTCACATGAACCGGAAACACACCCAAAGCAATTAATCTAGCGGGTAAATCGCGCAAAATTGGTAAGCGTAACAATGCTGGCGGTTGAAAAGTCTGATTAGCAGATAATACAGGTGCAAATACTCGCTTTTGAATAAATGTCTGAAATGCTTGAATAATGCGTGTCGGTAACTCTCGCTGACGCTGAACTTTGGCTAAGTCACTCAGCTTGACTTGGTGATTTTGCAGAGGTTGGCTGAGGACATTAGCGGCTACGACTGCATCTTGAATGGCGTAGTTAATCCCCACACCGCCAACGGGAGACATAATATGAGCAGCATCACCAATGAGTAACAACCCTGGAAGATACCACTGTTTAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCTCACTTAATCCCTATCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 303184-302710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000006.1 Aulosira sp. FACHB-615 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 303183 37 100.0 35 ..................................... AATAAACGTTTTGGGCTTGGCATTCCTCCGCAGTA 303111 37 100.0 35 ..................................... TCTAACTGCTTTTGTTCTTGCTCGGCCATCTGTTG 303039 37 100.0 38 ..................................... ATTCAAAATATAACTGTAGCCCAGATAGCTAATAACTA 302964 37 100.0 39 ..................................... GTTTAAAGATACGCTGCAAAACATCGGGCATGACTTTAA 302888 37 100.0 34 ..................................... GAAAGGGCTATCCGGTGATTTTGAATCCTACATC 302817 37 100.0 34 ..................................... CATTAACACCGCTAAAAAGCAAAATGATTATGTA 302746 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 100.0 36 GCCGCTTCTATTCTTTAGGGGCGGAATTATTGGAAAC # Left flank : TGACAAATTCGCTTTTTATCTTCTCGCTAAAATTGGCTTTTTATTGAGAATTAAGAACGAAGTAATCAGGGTTAGAAAAAGCGTGAGTGAATACTCTCATAAATGTTGAGAAAGATCCGGGTAATGGATAGCTTTTTAAGGGGGATTTAGGGGGATCGAAATATGTGCAACTTCACATTAAATTGGTATCAGGATGATGGCGATCGCTATTTTTATCTGTAATCTGACTGCACAGTTGACATACTCACTGGCGCGGATGAGTGGGTGTTTAAGAATTTGAAGCAATTTTTGTGGTTCAAAGGCTGATGCTGTATGGCTTTGAGGTGGATGGCTACAATATGGAGTTCCGCGCAATTCCTAGAAGCTTTGCCTGTTATGCTTTTGAGGCAATTTACAAAGGTGATGTCTTGACGAGCCAACGGCTAAAATGCTACTTTCTTTCTAGTCCCGCGCAAAGTGGCTTTAAAACCTTTGCAATATCAAGGTTTCAGAAGCCCGCA # Right flank : GTTGGCGCTGATAAATGTTCACTTTTCGACACCACTCGCTAAATCCCCAAAACCCTATACTTTTCGTTGAGTGGTGTCGATTGCTTACTGGGTAAGGATTTGAGCTATGTACTTGGTTAAATTTCGCCCAACATTTATAATGTTCTTCAGAGTGGTGTCGATTTGGCGGCTGAAACCCTTACAGGGTAAAGGCTCCTAGACGAACTCTTTACCGATTAACTCAAATCGGAATTATTGGAAACAAATCTTGCACTTCCACTTCAAAGGGAATACTCGCGCCTTTACCGATTAACTCAAATCGGAATAATTGAAAACACTTCTACTGGCTGTTGTAGCGATATATCTCGCCGAAAGTGTTTTGATTCCTCAAATCAGAATTTGAGCGGTTCTCAGTTGGATGAAGTACATTTCAACCCCACCCCCAACCCCTCCCCCGAAGTTTGCTCAACGGGGGGAACCCCCGCACGCAACTTCTCTCCGCGTGCGGAGAGGGGAGCGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTATTCTTTAGGGGCGGAATTATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 311646-311325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000006.1 Aulosira sp. FACHB-615 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 311645 36 100.0 36 .................................... TTATTAACTCTTGTAACTAGCCTTACGCTATCGTAA 311573 36 100.0 37 .................................... ATTGTGACCTTGAAGCCGTCGGCCGTAACGCCGGACA 311500 36 100.0 35 .................................... CGTCGTGGGAACCATGTACTGATTCGATGACCACG 311429 36 100.0 33 .................................... CCGGAGCCGTGCTGCTGAAGCCACTGGTCTTGA 311360 36 91.7 0 ...............T..............C.T... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 98.3 36 CCCTACCGATTGGGTCAAATCGGAATAGTTGGAAAC # Left flank : CAAGTAACAGGACGTTCTTTCAACCCCATTGAAATTACTCTCAAGCAGCAGTTCCGCAAATAGATTAGCTAAATTTTTGTAAAATTACTGTTATATCTAGTAGTCTGCCAAGATAACTTTGCGTGGTGGCTGGCAGAGGGGCAGAGGGGCAGAGGAGAGAGAAGAGGCTTCGGGGCAGAGGGGCTTCGGGGCAGAGGGGAGAGTACCTTCATTCTCCCCTGCTCCCCTGCTCCCTTGCTCCCTTACAGGGTCTACACAGCAATATTGGGTTGGTGGACTACTAGGTTTGAGGCGTTTTCACAGAGTTTTTTATTGTTCATCGACACACCTCGCCAAATCGCCGAAACCCTATATTTTTCGTTGAGGTGTGTCGATTGCTTACAGGGAAAGGGTTTGAGCTATGTGTTTTGGTCAATTTTCACTGATGATTTATAATAATTTCAGAGATGCGTCGATTTGGCGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : TCAAAACTAGAAGCTTAAATTTTGTAGTTTTGATAACTAAAAAAGAGGTTAGATATATTAGTATCTAACCTCTTTTATTTCTCTATTTTGGCGTTTGGGATTTGATTAAAGATTACGCCTGATTTTTAGCGCCGTCATTTTTGGGGAAAACACCGTTTCCACTGGTATGCAATAGTAAAACTGTTGTTGAACGATCGCAATTATCTATGCACAGCTACCAAATCCGTTTAGAAGGCGAAGTTTTACGAGTAGGATTTAATCGAGTTTTACCAGCGCAGGGCGATCGCATTGTGCGCGACGCTCTAGAATTATTAGAACAGATGATAGATTCTGGGCAAATTCCTGGGGGAAATCGCCTATTGATTGACGGGCCGCAATCTGTACCTGTAGCTTATGTGATGGCGCATAAACTATCACATTTATATCAGGCGATCGCTGTTCTAGATCCCAAAATTGGCACACCAGGATACAAAACTTATATAGTCACCATTTCCCACGGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTCAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 37034-36344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSE010000018.1 Aulosira sp. FACHB-615 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 37033 36 70.3 39 T....C..CC......A..TA.-.....GT..T.... TTGGTGCAGTGTGGGTTAACTCCTTATTCCTGGTTGTAA 36958 37 81.1 33 G..C...CC...T.C..............C....... CTGAAATATGTCTGCTGCTAGGGTAAGATTTTG 36888 37 94.6 34 ....T.....................A.......... TTTAGTAACCACAGCATTCAAGCTTGTGAAGGGA 36817 37 100.0 36 ..................................... CTTTTGCTCCGGTGAAATTAGCAGCTACAACAAATA 36744 37 100.0 36 ..................................... TATTAACTGCCAATTCGCATCAAGGTGGATTGGCTT 36671 37 100.0 35 ..................................... AGTTGAGCTGGTTTTTGTGTGGGGAGATTGAAGAA 36599 37 100.0 35 ..................................... CCCGATGACTTTGCCATATTTCGGGACATAATCAT 36527 37 100.0 38 ..................................... TTCGCACATACTGGCGAGGCATGAAGATAATCAGGCTG 36452 37 100.0 35 ..................................... TGACTAATTCGCCAGTGGAGGACGTAACCGGAAGA 36380 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 94.6 36 CTTTCAAATTACCAACTACCGTCAGGGTTGTTGAAAC # Left flank : GTGCTGCGATCGCACCGCAGAGGTCAGGGGTTCGAGTCTCCTATTCTCCATTGTTGTCCATTAAATTATTATTGTCAGTTTTAAAGAATTATTGTCCAATTTTACCAAGTGAAGGGGCATAAATTGCCTATTTTACAGACTTTCAGCCATCGAGATAGCTTTAAAGAATTATTGTCCAGAGTTGAAACCAGTTTTAAAGAATTATTGTCCAAAATTAGGACGCACAATATTGTGGAATTTAATTTTGGAAGATTAGGGCAAACCTATTGGTTATTAAAATAAAATTTATTAAACCTTTTAAAGTGGCTCAAAACCTGCTGTGCAAATTAATCTACCTTTCAAAAGATTCATTTGCAGCCTAATGCCAAAAATTTATTACCTTTTTGTCTACAACGGCTGCGTCTTATTGTGCGATCGCAGCACTCCTTTCAAACTACCCTAATAAATCAATATACGACAAAAAGATAAATTTAGCTCACTGAAAAATAGGTAAATCATGT # Right flank : ACTGACGTTCAAAATCTTTACTTGCACTGTGTTCCACAGGTGCTTTTGGCAAGTCTATATTAAAAGCAATTTTCTACAGCAGCTAAATAAACTTAGATTCACCTTGAGAAGTATGAAACCTAGTTTAGACAAGATTTGTAGAATTTTGGCAGCACCTTGGGGATTTTGCCCTCGCTTTGACTTGCCAAAAATAAAAATTAGGGGGTAGTTAGTAGTTCAGTAGCCACCGTGACGGTATACCCGTACCCTTACTTTGTTATAAACTAAGAGGTATAAGTTCCTTGTACAACCAAAACCAAAGATTCTAGTCATACAGGCCGCTCTGGCACCCAACACCAAGCTAAAAGAGTCTGATGTCAAGAGCTAAGGTTCTGGGCTGTTTGAAACCCTAACACCTCATACTTCCCATGCGTCTCGGTGCGAGTCCTTTCTCATCTAACAGCAGCATTTGCTTACCCAAACAACTACTGCTAACAAACACTTAGATGAACGCATAGGTA # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTACCAACTACCGTCAGGGTTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //