Array 1 84514-85605 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QVHX01000001.1 Streptococcus gallolyticus strain TM07-4AT TM07-4AT.Scaf1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     84514	    36	 100.0	    30	....................................	ATGCGTTTGAGTTAGTTCCAATTACGGAAT	
     84580	    36	 100.0	    30	....................................	ACATTTCGAGAAAAATATTTATTCTTTTTG	
     84646	    36	 100.0	    30	....................................	GCTGCGTGAAATGATATTCTTCACTTTCTT	
     84712	    36	 100.0	    30	....................................	CTCAAGGATGATAATATGTACGCCGAGTAC	
     84778	    36	 100.0	    30	....................................	CAAAATACATTTCAGAGCGCTTGTGGCACG	
     84844	    36	 100.0	    30	....................................	TGTTGACAGCGATTGGGTGTTTAAATACAA	
     84910	    36	 100.0	    30	....................................	CTTAGCGTGTATTCCTTAACCGCTCCATAC	
     84976	    36	 100.0	    30	....................................	CTTTTTGTAGGTGGCTAACCCCCACCAAAA	
     85042	    36	 100.0	    30	....................................	CTAATAACGTTGTTACTTTATCAGATTACA	
     85108	    36	 100.0	    30	....................................	ATAACTTCGCTTGTCACAATTTTTAGGTTC	
     85174	    36	 100.0	    30	....................................	ACTGGGCCCTTGATGAATACGAAAAAGAGT	
     85240	    36	 100.0	    30	....................................	TCTTTCTCGAGCATTGTATATGTTGTTTAC	
     85306	    36	 100.0	    30	....................................	CGCACCAGAGGATTTAGATGAAGTTATCAA	
     85372	    36	 100.0	    30	....................................	CTGATACAACGTGGTCTAACGAATACGACT	
     85438	    36	 100.0	    30	....................................	GACGTTTGAAGAATTAAAAGATAATTATCG	
     85504	    36	 100.0	    30	....................................	GATATTGCTAAAATTGAAACCGTTCAGGCT	
     85570	    36	  83.3	     0	............................TT.TGT.T	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.0	    30	GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC	                              	       

# Left flank :   GGATGACTATCTTGATTATTCTTCTTTCATAATTATTTGTAAGACTATTACACAAATGACTGAGAAATTTCCTAATTTTTATTGCACAATTTTCCCGTCAAATGAAAGTTATTTATACGTTACTAAAGAAACAATTGAACATGTTACCATTGTTTCAGACTTTATTGAATCATTGTTTGACTTAGATTTCATGTATGAAAGATTTATTGGTAGATACCCATCAAATAATATTCCAAGTAAAAGTGAGTTTTTGATATTACTTCAGAAAAATGCAAGTTATTTGTTTAGTGATCAGATTTCATATATTAGTTTAGGAATTTCAGATATGGTAGCCATCAAGATTTTAAATAGTTTATACCAGTATGATAAGTCTGTTGTATATCCAATACCTAAGATAGACCCGCTAGAAATAAGCTTTTTAAAGGACAGAGATTGACTTTTTTGTCTAATCAAACTATAATCGATTTGTAGGATACAAAAACTAAAAATGACGATTTGAG
# Right flank :  TTTATTATTTAAAATCGGTTGAAAGGGATTTTATGACTTCAAAAATTTTCTTTGGTGAGTGGATGAGGATGAAAAAATTGATAGCGCTTTTATCGATTTTACAGGAATCTCTGGTGTTATTGTGAATATGAAAGTACTCCTGATAGCATCAAATTAATTATTTTCACTGTTCAATAAGGTAATGGAGCAGGTTTATACTTATCAATTTCGCCCCATTTTTGAATAGTAAATTTGCTGACAATTATGAGTTAAACGGTTATAACATTAAACAATTGATTCTTGATGCGTATGCCAAAAAAGATATTAAGCACTGAGGGCGCTCAGGATGCTTTTAGACGAAATTATTTTATAATATTTAACCTTTTTACCATCTTATGATGCTTTTTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTTTAAGATGGATATTCAAGAATTAAAAAAA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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