Array 1 49661-50054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOPG010000004.1 Lentilactobacillus sp. IMAU80584 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49661 29 100.0 32 ............................. GAGACAGGAGATGGTCAAATGCATGACCCAAA 49722 29 100.0 32 ............................. GAGATATTCAGATTTTAAGCGGTCAGTCGAAA 49783 29 100.0 32 ............................. TAGATCGTAGCTTTTAGCTAGGGTTATTTTTT 49844 29 96.6 32 ............................C AAACAAGGTATTGAATACCGCTTGCAAAACCC 49905 29 100.0 32 ............................. GCGCCAGCAAGCAAACAGCCAAATAGTCGACA 49966 29 86.2 32 ...........A.....A...A....T.. AGGCTTCGATGGGCATTAAGTCCTTCATAATT 50027 28 72.4 0 .....TT..-.A.G....C.....C..A. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 GTATTCCCCACGTATGTGGGGGTGATCCT # Left flank : TATATTGCGTGGAAACGTGTTGAGGCAATATACGCGCATCAAATAAAACCGATAGATTGCGAGGAATTTATATGAACAAAATTTCTATTCGTGGCAGTTTGCAGACGAAACAAATCGTAGGTAGTTATTCAGATGTTGAGAAGAAGATTATTGCGGATTTAGACTCCGTTCAAGAAAAGGATGGCAAAAAGCCATTTTCAAAGATTGCTGATGAAGTGGTTGTTGAGCCATACCGGGACGGGGCGTATGCGTACCACGCATTATTAACGGAGGCGGCAAAGATGTACGATTTGTCGCCAGAGATTCAAAAGAGTGCCAATGTTAGTGATGAATAGTTTGATTTGGGTCATGGTGAAGACTTCCTGTTAGCTTGTTGTTGATAGGAAGAAGTTGCCATGGCCTATTTTTATGTCGTTAAGTTGTAAGGGTGTTGATCATAAAGTGATTGGAAACAGACATTTGCCGAATTGAAAATGCCGATTTAATAGGGATCGTTTAGT # Right flank : TTAGTATATGGGACATGATTCAGTATTATTGAATTTGGATAATTATTTGTTAGTAAGTAATAAATTATATCGTAGTTTTCTTAACAAGGATTTAGATTATAATTGATTTAGTTGAAGCTTAGGGGTAGATGAACTCAAACGAAGGGAAACTAAAACAATGAAATTGCATAAAAACGTAACCGCTTTATGGGCCAAGAAAAATTTCGAACATGATGAGCAACTTTGGCTGCCTTTGGTGATCCATCTGACGGATGCGAAGAATACCATTAACTGGTTGTACAATCATTGGCTCAGTGACAGCCAAAGGCAGTTATTGAAATATACGTCGCCTGATGAGACTGATGAAAGATCTGATGAGGATGTGCAAAAACTAGTCAAGTTTCTTGGATTTACCAACGACATTGGCAAGGCAACTCCTGCATTTCAAAAGAAGCGTTCTTATATCCGTGACGATTATTTAGATGATCAACTGGTGGAGAAATTAATCAGAAGCGGTTTTT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59752-60451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOPG010000004.1 Lentilactobacillus sp. IMAU80584 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59752 29 96.6 32 ............................C CAGGCTCGCCTGTTTTTTTCTTCAAATTAAAA 59813 29 96.6 32 ............................C GTTGCTTCGCGATACTTTTGATCAATTTGTTT 59874 29 96.6 32 ............................C AACGTCCAATCATTAGTGGCTAAATCATTGCG 59935 29 100.0 32 ............................. TCTACTTCCAGAAAAATGTGCAAAAGATTGTT 59996 29 100.0 32 ............................. AGCCCCCCTTGATGCAACACCTAAATAACTAG 60057 29 100.0 32 ............................. TGGCGGCTTGGTGGTTGGTGAAGTAACTGGCA 60118 29 100.0 32 ............................. GACTACTGCGATCAATGTGGCCAGAGCTGCAA 60179 29 100.0 32 ............................. AAATTGATCACATTTGTCCCGGATTTTTGAAG 60240 29 93.1 32 ..................T.........C GGGTATGGTCCAGAAAGCTACTATGATTTAGT 60301 29 89.7 32 .............A.........A....C TATGAATTCGTTTTGGCACACTTACTTCAGAT 60362 29 93.1 32 .............A..............C GACGGCACCGCTCTTTGTCGGTGCTACAACGA 60423 29 75.9 0 ..........T..A......TT.A..AA. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.1 32 GTATTCCCCACGTGTGTGGGGGTGATCCT # Left flank : ATGAAGGACAAAATTATCTCGATTGGTGCGATTAAAAGAACTAAGAATGGTGAATATGACCAATTCGATCAATTGATTCAGATTGATTGTGAAGTTCCGAAGAAAATAACAGAATTGACTAATATTTCTTCAGAACTATTAGCAACCGATGGAATCGATTTAAGCTTGGCTTTGCAAAAGCTCAAGGATTTCGTTGGCAGTTCAACCGTCATCGGATATAATTTGCGGTTTGACCAGGAGTTTCTTTCGGAAGCCTTTCATCAAACTAATCAATCTGATTTAACTAATGAGATGCTGGATATAATGCCGATGGTAAAAAAATCAAATCAGTTTCTTGATAATTATCGATTGAATACCGTTTTAAAAGCGTATCAAATTGATAATTCAACGCCGCATCATGCATTGGCAGATGCAAAGGCAACATTGAACCTAGCAATCAAACTCATTGAAAAAGGCCATTTGTAAATTTGAGAATGCCGTTATAGCAGGGATCCTTTAGT # Right flank : TGGATATCCAATAAGGTAGTACAGAGTAACAAATGTCAAAGAAGAATTGAGTTTCAGCAAAACTCATGAAGTGAGTTGAAAGCAATATTCTTAAGGTATAACATAACGTTAACAATTATTTTTTGGAGGCATTTTTATGACGACCATTGGTTTTTGCTCACCGTCGACACCTATTACTGCAATCTCACCGATTCGTTTTAAACGAGCGCAGAAATTTTTGACCAGTAAAGGGATCCAGTTGATTGCCGGCAATTTAACGGCTAAAAGAGATGCTTATCGGTCTGGTTCAATTCGGCAAAGAGCCGACGAGGTTAACGAATTAATTCGTAACAATCGTGTGGATATCATTATGACAACGATTGGGGGAACCAACACCAATTCAATTTTGCCTTACGTAGACTATGATTATCTAAATGATCATCCCAAGACGTTCGTTGGTTATTCCGATGCGACAGCATTGTTACTCGCAATTCAAACCCATGCCCCCAATTGTCGGGTAC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 320-1204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOPG010000015.1 Lentilactobacillus sp. IMAU80584 Scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 320 29 96.6 32 ............................C AATTGATGCTGCTCGAACTACCAAGAATAAGA 381 29 100.0 32 ............................. CGTCCGTTTACCAATTGGTACTTGGTAGTTCA 442 29 96.6 33 ............................C CTTATCGCCTTTGTTAATTTGATTAGGCCGATT 504 29 96.6 32 ............................C AGTATTCGTTTGAGGTGCGTTGCCAATTTGTT 565 29 100.0 32 ............................. CAGCGGCCAGACGGATCATCACCTGACCACGA 626 29 100.0 32 ............................. TGATTGTTAAGGAGCTGAGTCAAATGGATAAC 687 29 100.0 32 ............................. AAGAATAATCCGATTACCAAAAGTCAGTACGC 748 29 100.0 32 ............................. AAATGTGAGCCTTTAGAAATCTATCGGATATA 809 29 100.0 32 ............................. GTAATTCATTTTGTAACCCCCTTCCTAGGTTA 870 29 100.0 32 ............................. GATATGCGGGTCGCTAGCCCGTTTAATGACGC 931 29 100.0 32 ............................. AATACCATAGTTGCGATTAAAGAAAATATTTC 992 29 100.0 32 ............................. AACCACCTTCAATGATGTTAGCCCCGGCAAAT 1053 29 100.0 32 ............................. ATAAGTTAGTTGCTGACATTTCAAGTTGGCAA 1114 29 100.0 33 ............................. CACCCCAGAAGCTGACTATGAGTTAGCCCCCCA 1176 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTATTCCCCACGTATGTGGGGGTGATCCT # Left flank : TTAGTTTCGCTGTTAACAGCAAGCTAAATGGTTAAATTAATTAAAATATGCCCTGTGATACCAAGGGATCAGTCTGTCTTCATACTTTCAAGTTTCAGTAAAATGATTAGGGATTTGAGATGGGGTCTTTGTGAGTGGTCCACTATTTACCATTTCAACAACCCAATTTTCGTAGCATCAGCAAATATTTTTTGTTATTCTTAAGGTGGCCAATTGGTTAGGAGTATGGATTGGTGTAGGAAGGAACTTTCGAGTCCAAACTAATGAAAAACAGCTGGATTGGAATTTTCAAATGCCGAGATGACAGGCTTTCTTTAGTG # Right flank : TTTATAACCGCCACAAGACCTACTTTAAGCAATTGCATCAATCACGTGAGGATATTAATCATACTTATTACAAATATTAATCACCAGAGACTGGGAATAGGCATTTTGATTCCGGCCTTTTTCTTTCTTCAATTCGGTTTATGAAGGTAAAACAAAAGCCGCTGATTTAAGCGGCGGAAATGGGTTTGAATTGACAGTTATTGCGGAGGCTGACAGTTCATATTTAAAAAATACCTTATAGCTAGACAACTTTTCCTACTTACCCAGTTCAAACAACTGGGCCATCATGCCCGAGCCATCCGCGTGGAAACTAAATGCTGGCTCGCTGTAAGTTGCCCATTTGTTTAATTCAGTGTCTCGATGTTCCTGATCACAAGTCAACAATTCGTTGCTGGCAGTTTTGGCGGTCTTCTTGTATGAAACGAGGCCGTTGGTGTTGTAGACCAGCATTGCTCCTAGGCCGGTATTGGTTGTAGCAATTCCTGTCGACAAAAAGTAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //