Array 1 183792-185223 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHR01000006.1 Salmonella enterica strain BCW_5879 NODE_6_length_200326_cov_3.73891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183792 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 183853 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 183914 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 183975 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 184036 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 184097 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 184158 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 184219 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 184280 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 184341 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 184402 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 184463 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 184524 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 184585 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 184646 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 184707 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 184768 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 184829 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 184890 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 184951 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 185013 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 185074 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 185135 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 185196 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1112-2283 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHR01000014.1 Salmonella enterica strain BCW_5879 NODE_14_length_108491_cov_3.74227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1112 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1173 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1235 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1296 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1357 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1418 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1479 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1540 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1602 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1663 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1705] 1705 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1766 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1827 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1888 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1949 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2010 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2071 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2132 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2193 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2254 29 96.6 0 A............................ | A [2280] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //