Array 1 1314-1589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPC010000083.1 Leptolyngbya sp. FACHB-541 contig83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 1314 37 100.0 38 ..................................... ATGATTTGAGGTTTTTGTGGGAGGGTGGCGCTTACACA 1389 37 100.0 38 ..................................... CATCAAGCACATCAGCTTGCATCCTTATCCCAGTGCAG 1464 37 100.0 52 ..................................... GACTAAGGAACCTCCGAACGCCCTAGCATTTGTTAGGAGTTGCAATCGCCAT 1553 37 73.0 0 T...GC..TA......T.....C.....A......GA | ========== ====== ====== ====== ===================================== ==================================================== ================== 4 37 93.2 43 GTTGCGATCGGCATTTCGGCATTAGGCAGATTGAAAG # Left flank : AAACAACCACTTGTAGGAACTCCCCAAGAAAAAGCCAAAGACTTAGCGATCGCAGCCTACCAATCTCGAAAATAAAACTACTTGCAATCAGTTCAAATGTACTGTATAAATTAGATGCGCCATAGTTCATGCCAGAAATGGTCTCTGTGCTATTGCTAAAAGGCTAGTTTGACTATTGGAAGGTGGTCATGCTTTCTGGCTTTGGTTAACTGTCCACCTCGAAGTTGGGTGCGCTCCCAGCAAGAAGGTGCGGGTTTACCGCAGTGGTGGTTAACCGTTCTCACCTCCGAGCAAGGAGGAATCTACCTTAACCCTTAAAATTTGGCAAACCGAAGCAAGGGCAAAAATCCTGGAAGGTTTGACAGTTCATATTTAGTCAACGTTTCAAGGATTTTTCACCAGTTGAAGGCGCTTTTGAGTTTCTCAAAAGCCGACTTAGAAAGGAGGTTTGCCAAAAGCGTAGCTGAAAGCTTTAGTGGAATTGATTTTCCAGCACTCCA # Right flank : ATTGAGGTTTAGAAGAATTTGATGAAGCTGGTTTCTTCTAAGGGAAAACTTACGCTAAAGTTTTGTACAGGGTAGATTGAAAGGCGCACCTTGTTCGGGATTGTTAGCTTCAACTCTCAGTAGAGTTGGTCTCATGGCTGTCAAAAAGTACAGTGACAATAAAGCGTTAACGACCAGGTAAAGGTGTTTGACGACAGTAAAGTGTTAACAGTGACATGAATTTGCTAACGATGACATGAACTTGTTAACGATGTCAAATAAAGTGTTATTCGATGTCCATTAAAGAATTAATTTCCACTTTAAAGCGATAACTTCACTTTCGGAAGTGGGCGCATAATTAGCTTCAAAGCTCCATTCAATAAGGCTTTGAAGCTAATTATGCGTCTTTTTGTCTTGTCAACGATCTTTAAATCAAACTACTTCCCAAATTTGCAACCATCATTATATTCTTTAAATCAAACTACTTCACTTTTTATAGTGTCTCAGGAGGACTTTTAGGT # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:0, 3:3, 4:0.66, 5:0, 6:0.25, 7:-0.19, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCGGCATTTCGGCATTAGGCAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 22814-17371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPC010000083.1 Leptolyngbya sp. FACHB-541 contig83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 22813 37 100.0 36 ..................................... AAAGCCCTTTTGGTTCAGCACTCCTGCTGGGTCCTT 22740 37 100.0 35 ..................................... CTCGGCAAGCTTGATACAGGCGCAATGCTGATTGG 22668 37 100.0 35 ..................................... ACAGCTAAAGAAATTGCGATCGCCACTCACTACGA 22596 37 100.0 34 ..................................... TGCTGAAGCATCACAGTTTTCTCGCCACCAAACC 22525 37 100.0 33 ..................................... CCATCTCCAGTCTGAAGCGATACCAGTCCGGCG 22455 37 100.0 39 ..................................... AATGGGACAGTTTGAAGGGCCCTCGGTGGGAGTGATCAC 22379 37 100.0 34 ..................................... ATGCTAACAACTCAGCAAATGCGCGATCGCCAAA 22308 37 100.0 37 ..................................... ATGCGAAAAACAGCAACCTCGCTCAAAAGCGGCACAG 22234 37 100.0 33 ..................................... AAAGACCCTGCTGGCGTATTGAACCAACAAGGC 22164 37 100.0 34 ..................................... ACCTGAGAAACGCGGGTTTGAGTTAGACGCTGAA 22093 37 100.0 36 ..................................... CCTTCCATCATTGGTTGAGCGAAAAAATAGACAAGG 22020 37 100.0 34 ..................................... ATACGCAGGGTGGTGACTATTGCAATCGGCTAAC 21949 37 100.0 35 ..................................... ACTACTGCGAGGGTTAGAGGTTTTTTTGTCACAAA 21877 37 100.0 37 ..................................... ATTGGCGGTGTTGTCACTCGAATCGGATCTAATCCAG 21803 37 100.0 36 ..................................... ACCTTCCTCCCCAACTCTCCTCGCTCAAAGTCCGAT 21730 37 100.0 34 ..................................... AAGCCAAGTAGACAACGCTTTTTTTGGCGGAACT 21659 37 100.0 35 ..................................... CTTAGTGCGTAAGGAGATCGGTAAAATTACAGTGT 21587 37 100.0 35 ..................................... CCTGTTACGGGAATCGTTGGGGTCTGTGGTGTGAC 21515 37 100.0 35 ..................................... ATTTTTTGCTCCAAAAAGCTGGTCAAGTTTTTTGT 21443 37 100.0 34 ..................................... CGATTAAACTGAACTCAGGCTTGTTTTTGCTTAA 21372 37 100.0 34 ..................................... ATGGGATAAAGCTGCTAAAAAACGAGGCAGAGCC 21301 37 97.3 34 ................................A.... AATGTGCCAACGGCTTGATAGGGCTATCGTCGGT 21230 37 100.0 35 ..................................... TTTTAGGTCGCAGGTTGCTAGCACACCATTGGCGA 21158 37 100.0 36 ..................................... ACCACGCGGGAATACACCAAGCATCTACAACGCTAC 21085 37 100.0 35 ..................................... AACAACTAGTTGAGGAAGAACTTAAAAAGCCCGAA 21013 37 100.0 35 ..................................... GTCATCGGTCAAGGCGCTTCAGTTAGTAATTTTGT 20941 37 100.0 33 ..................................... CTTCTCTACCACTGAAACAGCCCAACTAGTTAG 20871 37 100.0 36 ..................................... TTTTCTCCCTCACCTGCACAAACCTGGCAACAACTA 20798 37 100.0 34 ..................................... TCCTCAAGTAAATGGTGAGCGGATTCTTTCATGG 20727 37 100.0 35 ..................................... TACTTACGCAAGCGTTGACGGGCTAAGAACACTGG 20655 37 100.0 35 ..................................... ATCAACCCCGATACCTGCCGTGCCGACGCTCTAGA 20583 37 100.0 35 ..................................... AACAGCTAGTGGGCAAGCCTACTCAGGCGAATCTG 20511 37 97.3 34 ............................A........ AAAAATGCATCGGCAAAGCATTGGATTTTATCTA 20440 37 100.0 34 ..................................... ATCTAATCTCCAAGAAGCTCTAAACAAAATCAAT 20369 37 100.0 37 ..................................... ACTAACCCTGTGATCTTTGATCCTGAGAATGCATCGG 20295 37 100.0 37 ..................................... CCCCTTACCTTAAGGTGTCACTCTAATGGCTGCTTAC 20221 37 100.0 35 ..................................... CATCTCCACACAGAATGGGTGCCCGATCGCCACAT 20149 37 97.3 35 ............................A........ TTTCGCGGTGGAGGGCAAGCGAGCCAGTTAATCTC 20077 37 100.0 35 ..................................... AAGCCTGCCCAACAACATCAACGATCCGTTAATGG 20005 37 100.0 35 ..................................... TCACCCAGCAAGGGTAAGGATTTATGCAACCTCTG 19933 37 100.0 36 ..................................... ATGAAAAGGCGCTAGTCTAGTCTATTGACCGTTCGA 19860 37 100.0 33 ..................................... AACAATTACTTACCTTTGCTGCACAGCGGCTAG 19790 37 100.0 35 ..................................... ATCCACTGATAACAGTTCTCTGCAAACACTCCAAA 19718 37 100.0 34 ..................................... TACACAAGGCTAGAATCAAAGCAACGAATTGCGA 19647 37 100.0 36 ..................................... CCTTTACCGAGCCTAACTGAAGAAATCATACCCGTC 19574 37 100.0 33 ..................................... AAGCCATTGACTGGTAGGGATCATGTGGCGCAG 19504 37 100.0 33 ..................................... CTCCACCCGTGCGATCGCGTCGGCAAGCTGCGC 19434 37 100.0 35 ..................................... TCAGGCATCAATGGGGAATTGAGGCTAGACCGCAG 19362 37 100.0 35 ..................................... AATATCTGTATCAACTAGCTCATTACTACGCTTGT 19290 37 100.0 35 ..................................... CGCAATACAGTCATTTAGTTCCCGACAATCCTATA 19218 37 100.0 36 ..................................... TCCATTACTTCAGGGATGTGGGAAATATGCGGGAAG 19145 37 100.0 34 ..................................... CATTTGTCCATTACAAACGGCTGCAATTGCGGTT 19074 37 100.0 35 ..................................... AAGCGATCGCTGCGCTGAAATCGGAACAAGTACAA 19002 37 100.0 35 ..................................... ATCCCTGATTTGCTCAAGATAGCTAGGGCATGGGA 18930 37 100.0 36 ..................................... CCTAGTTGCGATATGCGCGGCGCGCCAATGGTGAAT 18857 37 100.0 35 ..................................... ATGTGGCGGGTGGTGGATTCACCTGGTCACACGCT 18785 37 100.0 35 ..................................... ACGGGCGATCGCAACGTTGTAGAAGCAGCGATCGC 18713 37 100.0 35 ..................................... CCCGCTTTAGAGTGGCAGATGCAGATGACTGGCAA 18641 37 100.0 35 ..................................... CCGAAAGTGCCCCTAATACAGCCAGATGCAGCAGT 18569 37 100.0 35 ..................................... TCGTTCCGGATGCCGCAACGATCGCTAAATTCCCG 18497 37 100.0 36 ..................................... CATTCCACCATTGGCTATCAGAACGAATAGAACGAG 18424 37 100.0 35 ..................................... CATGTCAAGGCGATCGGCTGATAGCCCTTCACCTC 18352 37 100.0 37 ..................................... AGGGAAGACAGATGAGATTGAACGACTGGATCTAAGG 18278 37 100.0 36 ..................................... TCTAGAGTCGAGGTAAAGCTTTTGGCATCCCGGAGC 18205 37 100.0 35 ..................................... AATTTCCAGAATGGAGGGCAACGCGATCTTAGATG 18133 37 100.0 34 ..................................... CGATACGCTTGGCGGATTGGGCGATCGCCGCAGC 18062 37 100.0 36 ..................................... TATGCTTTCGGGTGTATCTCCTCGCAGTTGTGCCCG 17989 37 100.0 36 ..................................... AGATGGTTTTGCCTCATGCCCTTCAAAGGGTCAGAC 17916 37 100.0 35 ..................................... AGAAGGATGCAAATCGATAGCTGTGATGGGTCTAG 17844 37 100.0 36 ..................................... ATCTCCATCTTTCGCCAGAGTAACTGATTGGCTTGA 17771 37 100.0 36 ..................................... AGCTATAAGCCATGCCTCAATCCTAAGTTGGCGGAT 17698 37 100.0 36 ..................................... AAGCGAGTCTCTAGCTGAGATTCGGTGCGGACGGCT 17625 37 100.0 35 ..................................... AGTCTGAAGTGCTGTTGGCATGATGATGATTTCTC 17553 37 97.3 36 ....T................................ CTAGTCAACTGTTAAATCTGTTACAGCATCCACTCA 17480 37 97.3 36 ..........A.......................... TCTGGACAGCGCCGTTGGCACGGGTTTGTCAGCCAG 17407 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 76 37 99.8 35 GTAGCGCCCAGCTTTCGGGCTGGGTGAGGATTGGAAC # Left flank : ATCAACCATTCATTCAACGCTAACCTCTCATTCTTGTGAACATTATTGTTGCTTACGATGTCAATACTGAAACACCAGCAGGTAAGCGCCGCTTGAGGAAAGTTGCTACTGTCTGCAAAAATTATGGACAGCGAGTTCAGTTTTCAATTTTTGAATGTCAGATTAACGAAGCTCAATATGAAACATTTCAGTCTCAGTTAGTAAAGATCATTGATCCAAAACTTGATAATCTCCGCTTCTACAAACTGCCAAATCCGAGAGAGCAATACGTAGAGTGTTACGGAATAGATAAGTATATTGATTACAATGACACGCTTATTATCTAACTTCAGCGCGAACCTGAAGCGATGTCTGAAAAGCAGTAGGGTTCGCGCCCTAGCTCTGACAAGACTTTCAAGCGTTTTTGGCAGATATGCAAAGGGCAAATATAGGTAGATCATTCAAGGTTCGCGTTATTATGCTCCGAATCTTGCATCCAGTAAGGGTTTGATACAATCGCC # Right flank : AGTAATCGCAAACAATATTTAAGGTAATTCTAGATAGGCTCAGCTTTAGGCTGGGTGAAAATTGAAATGGCTTACAACCAACTAGAGAGGTGCCAAACAACTTTGATGAGAGTTATTTACTTTCACCAATTTGCTTCTTAATGACAGCACCACATTGAGCATGAAACCAATCACAAGCTATAGAGAAATTGCGATCGCTCCCTAGATAAATTGCTCCCATCAACGCCTCAAACATTTCTCCAAACATATCTCCCTGCCTGTCTCTATCGCTGATTCCATTGCCCAAAAAGCAGACTCGGTTTATCCCCACAGCATGAGCATATAAAACCGCTCCTTTTCGCTCTTTCAGTGGTTGAGATTTCTCAGTGAGAATACCCGCATCATCATTTAGAAACTTGAAAAAAAGATAGTCCGTAACAGCAGTATTCATGATACCGTCGCCCAAGTGAGCTAAGCGCCTGTGTTGTACAAGCATCCAACTTCGTTCTGTCGGGTCTTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCAGCTTTCGGGCTGGGTGAGGATTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.90,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 37845-38182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPC010000131.1 Leptolyngbya sp. FACHB-541 contig131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 37845 35 100.0 37 ................................... AAGTAAAGATGAAATGAAAGACGAGGGGATAGAGTCC 37917 35 97.1 46 ...........................G....... TTTGTCAAATGGGGTTCCGCCAGTTCATACACCTTTGTGGCAAAGG 37998 35 100.0 38 ................................... AGAGCGATCACCAGGCGTTAGAGAGAGTCCACTTGCAA 38071 35 94.3 42 ...............T..........A........ GCGGAAGTCCAAACGCATTTTTCATAGCTTAAGCCAGTTAAA 38148 35 94.3 0 ..................T...............G | ========== ====== ====== ====== =================================== ============================================== ================== 5 35 97.1 41 GTTTCAAACCCCATTCCCCGCAAGGGGACGGAAAC # Left flank : TTACCTTACAGTCTTGTCTGGACTTGTCCAAGGGACTTGACCAAATTATTAAGGATGGTCAGACTACACAAGTGAAGGTAGCCGCCAAACTAGAGAAGCTGGGACTGATCAAGCGGCAGGGTAATTTGCTTAAGCTCAGGTGCAAGCTCTATCACCTTTACTTTAGCGACCATTTGTCTCTCTTCTGCCTTTCTTGATTAACCGCCATCATCACAAAAATTGAGCCAATTCCAACCTCTTTATCCCTTCCCCTATTTCACCCTGCGAAGCTTGACGATTAAAGTCTAAGCGCGTTAGGTGCAGCGTTGGAAATCGACGCCCCCCCAGAACCTCGAAAACCGTATAATCTCGTTGACGTGTGTCGATCCCTCTCTCCATAAGGGTTTCGACGAATTTAAGCAGGCTTGATTCTCAATTAGATCTGCTTATTGACCATCAAATTGGGGGTGCGTCGATTTGACCGCTGAAACCTAGTCTGGGCAATGCTTCCTGGACGAGGG # Right flank : GTCTAGGTATAAGCGATCGCACCTATTTTCAGATCGTCTCAAATCCTCTTCCCTACAGAAAGATAGAAACAACTTTTCAGGAAGCTTAGTTAATGTTTGGAGAATGCGTCACACGCACCCTAAAGTTTCTGCCTCCTTGCAAACGGTCGGCTACACTTGAGGGGTAAACTCGCCGCATCAACCCACCCCGTGATTTTGGTAAGTTTAGCTTTGAAGGTGCAAAGCGCTTAAAAACTGGACTTTTAGAATCGCCGCGATAGGTAATTCCTCTGTCGAACTCACGGAATCACCCCAGCGTGTTACGCATCGACCTATGACCAACTTAGAAAAACGTAAGCTATTGTCAGCCCTTAGTCATGGTGCTTTGGTCCTGAATGTCGCCGTTTTGCCAGTCTTAATTCCGATCGCCGTTTTAATTCTCTCGGATGACTCAATCGTGCAGCAAAATGCGAGAGAGGCAATTAACTTTTGCATCAACATTACTGTCTATATCTTCATTT # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCCCATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 111455-111230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPC010000148.1 Leptolyngbya sp. FACHB-541 contig148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 111454 27 100.0 45 ........................... GGTTAGAAAGGCGAAGGAATAAATGTCCGTGCGAAGGAATAAATG 111382 27 100.0 46 ........................... GGTTAGAAAGCATTCGGTTTCAATGCTCCAGCCCTTTTGCGGACGA 111309 27 96.3 26 ...........T............... GGTTAGAAAGTCCAAGCCTTGAGATG Deletion [111257] 111256 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================== ================== 4 27 99.1 39 GTTTCCATCGACTCCTTGGCTAGAGGT # Left flank : GGGTTTCCATCGTAAGGTGGTTCTTTTCGACCCTGGTAGTACAACTCTTTTAGAGTTCGCCTGCACCTGAAGCTGCCTAGTTAGGACAATTGTCTCAATTAGAGACGTGCGTTGAGATTAGGGATTAAGTGTACGAACGAATTTCCGATTCTATTAGTATACGTAGGTCGCTCCCATGCAAACAAGGTGCAGTTCTCAGAAATGGGGACAACTCTCAGAAATGAGGGTAGGGACTGTATCCTAAGGCGGCTACTGAATACGCTTACTGGGCTTGCTCAGTGAGTATCCACCAAGCCTTCACCTGACAAACCGAAGCGGGGTCTAAACCCCGGTGGGTTTGCCAAATTTGTTCAAACCCTTACGTAGCTGGCGATTTGTCTATTTTTGGCTTATTGGATACTAATCACAGAATGAGTAAAAAGATTAGTATTTATGCAGATGAAAATACTTTGCAGGATTACGTGAATAACTAGCTTACAGTAAGGGCTTGAGCAGCCGGG # Right flank : AGCAGAGGGATTTCATGAGTCTAAGAACGCTAACCTTGATATCTCAGTTATTCCATAGACTTTGAGCTATTGGCACAAACTGCACGAATTGAATGAGTTATCCATTTTCCGCTTCAATCCTCGAAAACTCCGGCATCAACAATGGTGGATAGAAAGGCGCACTTCCTTCGCATAGCAAGGACTTAGGCAAACTGCTTCTTTCTAAAGTTAGGCAAGAGCTTATAAGGTCAAATCCTCAAGAATCGATGCTTCAGAGATTATTCTCTGACAAAAGCCATGAAAAACTGGCTTTTTGTACTCAAAATAGCGACAGTCTTCAGGCAGTAGCTTGAAACGCTTGGAAATTCGTTCTTCTAAATATTCTTTGACAAGAGCTATAGAAAACTGACAAATAGCTCTGGAATGTACACTTGCAGAGACCGCTTTTCAGGAGTTTTAATCGTATGGGCGATACTGGATTTGAACCAGTGACCCCTTCCGTGTGAAGGAAGTGCGCTACC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCGACTCCTTGGCTAGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 7739-7412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPC010000043.1 Leptolyngbya sp. FACHB-541 contig43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 7738 31 100.0 45 ............................... CACAAGCCCTTCCCGCTGGTTTTGTGCCAACTCTGCCGCCTTTCA 7662 31 100.0 44 ............................... GATGAAAAAGACCTATCAGTAAAAGCCATTTGGGAAGTCTTTCA 7587 30 96.8 42 ...............-............... AACATCAGCTTTCACGTCATCCACTAACAGTTCAGGCTTTCA 7515 31 100.0 42 ............................... GAACCATGAGGCATCAGGGCTAGGGTTTCCATTTTTCTTCCA 7442 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================= ================== 5 31 99.4 44 AACCCTCTCAAGCGGAAAAAACCGTGGCGAC # Left flank : GAATCAAAGACGGAATGAGATAGAGCGATCGTTCCTCACATTCAATCTGTTAGTAATCGCGCGGGTGTAGTTTAGTGGTAAAACCTTAGCCTTCCAAGCTAATGATGGGGGTTCGATTCCCCCCACCCGCTTAAATGTCCTTTTGTCCTTTAAACGATTATTTGTCCGCTTTTAAAAGATTAGTGTCCAAGTCCAACGAAGATGCGTACTTCTCAAGGTCAAAGGCGTTTATCGTCACTAATTCTGTGCGTTCCAAACGGTTTTAAACAATTAATGTCCAAATCCCTTCAACGGAAACATTCAGGCAGTCCAAATTACGTGTTTGGAGTGACAAAATATTGTGAAAACCTTGGAAGGCTAAGGTTTCTTTCAATCCTCTAAAAATTAAGCCTACTACTGTAAGGGATTAAGAGATTTAAGTCAGCATTTCACATATCAACCAGTTGAAGCTGAAAGAGCCATAGTGGTTGCTCAGCAGGGTTTTGTTCGCCATGCTTTCA # Right flank : TCTAACCGCTAAATCCCCTACGCAGCCGACTGTTCCAAAGCTGTTTTGGCAAAGGTCTTCAATCTAAAATTCCTTTTTTCAAGGAAAATACAAATTTTAGACCTGAAGGTTCAAAAGTCTTCAACAGCAGGGATTTCACTTTTGGCAAAGGTATTGGGGATTTTGTCCTCACTTCGGTTTGCCAAAAATATTAGAGGATTCCTCCTTGCTCGGAGGCGATTTAGTAGCTGCCACGACACGTATGACTGTATCCTCATAACTAATGGCTCACAACCACTGCTATGAAAACATTGCTTCTTGATGCTAGGCGCGACCCTGCACCCTATTTGTAGAGAAACTCTACAAAAGAAACGGACAACTACCTGGAGCGGAAAGCAATTAAACTGCTCCATACTTTACACCTGTCCTCGAAAGACCGGCGCGCTATTGGGAAAATATTACATTGTCAAGGTTCAAGATTCTGTCAAGTTCACAACGCTGGGAGCCGGTGAGCAGACATT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACCCTCTCAAGCGGAAAAAACCGTGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //