Array 1 127450-125713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLM01000069.1 Escherichia coli 1-182-04_S4_C2 e118204S4C2.contig.68_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127449 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 127388 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 127327 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 127266 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 127205 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 127144 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 127083 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 127022 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 126961 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 126900 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 126839 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 126778 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 126717 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 126656 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 126595 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 126534 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 126473 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 126412 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 126351 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 126290 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 126229 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 126168 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 126107 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 126046 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 125985 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125924 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 125863 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 125802 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 125741 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154398-153149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLM01000069.1 Escherichia coli 1-182-04_S4_C2 e118204S4C2.contig.68_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154397 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 154336 29 96.6 32 ....C........................ ACAATCACATATACGACGCGAGACGGAGATCG 154275 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 154214 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 154153 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 154092 29 96.6 32 ...........A................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 154031 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 153970 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 153909 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 153848 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 153787 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 153726 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 153665 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 153604 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 153543 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 153482 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 153421 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 153360 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 153299 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 153238 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 153177 29 86.2 0 .A.CC.......................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //