Array 1 309739-310308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFJU01000001.1 Pseudomonas aeruginosa strain MRSN18971 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 309739 28 100.0 32 ............................ CTGCTGGACCTGTTCACCCGCGACCAATACAT 309799 28 100.0 32 ............................ TTCAGGTCCCGCTGGCTGTTGGCGACGGCCCG 309859 28 100.0 33 ............................ CAGCAGAAGCCGCTATGGGTGCCGACCCACGCC 309920 28 100.0 32 ............................ ACGGGCGGGCCGTCGGTGCCGATGCTGACCGT 309980 28 100.0 32 ............................ ATGTCGATCTGCTGCTTGCGACGCTCCCGCAT 310040 28 100.0 33 ............................ ATGACCCTGCCGCCTACCGGGCCTCGTTCGTGG 310101 28 100.0 32 ............................ TGTGGCTAGAGAGTCCGATGGGGGGGCGCTAT 310161 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 310221 28 100.0 32 ............................ TGCGCCCTAAATCAGTGATCCGGCGAATTTGG 310281 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 153931-155493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFJU01000010.1 Pseudomonas aeruginosa strain MRSN18971 scaffold00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 153931 30 100.0 36 .............................. TGCAACTCAGGTAAGAAATGTTGCAAGAGCATTGGT 153997 30 100.0 36 .............................. GGTTGATGGCGATATGGCTAAGGTACGCGCTCTTGT 154063 30 100.0 36 .............................. AGCGCTATGCAGTAGGAGCCCAGACAGTCGGGATGT 154129 30 100.0 36 .............................. CTGATCAATGACCTCCTCGGTGGCCGCACACTCCGT 154195 30 100.0 37 .............................. AACGCCTTTATCGCCGCGAACAACGCTCCGACCTCGT 154262 30 100.0 38 .............................. ACTGCGACTCTAGAGTTGCGTGAACGACCTATTCTTGT 154330 30 100.0 37 .............................. ACCTTTTACTTGGAGAACGATATGAGCAAGCACACGT 154397 30 100.0 36 .............................. CTTCGGGAGAAGGCGCGCGAGGAAGGTAGCGGCAGT 154463 30 100.0 40 .............................. ATGAACGGGAAAGCTTTCGCGTCATCGCCGGTAACGAGGT 154533 30 100.0 36 .............................. CTGGGGCTCAAGGCGAAGAAGGTGGCCTGATGGCGT 154599 30 100.0 36 .............................. GCGCCAGAAGCCTCGCAACCACTGCGAACATTAGGT 154665 30 100.0 36 .............................. TCGACCGGCGAGATGTCGCGCGACACCCTCGGCTGT 154731 30 100.0 36 .............................. TCGACCGGCGAGATGTCGCGCGACACCCTCGGCTGT 154797 30 100.0 38 .............................. TCTTTGCGGACATAGTTGTAGGCGCCGGCGAGTGCGGT 154865 30 100.0 36 .............................. GCCGAGATCGAACCCTTCCCGTCCGCCGTACTGGGT 154931 30 100.0 39 .............................. ATCGTGAGCCGAAGCATGGAGCCATCGGCGAGATACCGT 155000 30 100.0 35 .............................. AGCAACTATCGCAAGGCCCTGCCGCTGCAAGACGT 155065 30 100.0 36 .............................. CGCTAATCCCGCGTCGCACTCGCCGCCACGATGGGT 155131 30 100.0 36 .............................. GGGGCAGCCCCCACCACCTGGCAGAAGATCGCCAGT 155197 30 96.7 37 .................T............ TCGCGCAGGGAGCGCTCGATGAACGAACGCACATCGT 155264 30 100.0 37 .............................. ACGAACACGGTTATCACCGGCGACGGTAACAGCGTGT 155331 30 96.7 38 ...............T.............. AGCCCCGGCCAGGTCGTAATGACCGCAGCCGGTGAGGT 155399 30 90.0 35 ...........T................CA ACTGCCGTTGTCGCGTGACGGCTATCAGGGAATGT 155464 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================== ================== 24 30 98.6 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGTCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTAGATAGCGCGCAGTGGACACTCCTTAAGCATCGTCTGTGCGACCTAATCAATCCGGAACAAGACAGCCTACGTTTCTACTACTTGGGCACGAACTGGCAACATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTAAATGGCCCGCTGATTCTTTAGCGTCGGCGCGAACCTAAAGCGACCGACCCAACCCTGAGGGGTTCGCAGCTCTCTAGCTGATTGATTTATCTACTCTTTTTTTGACGTTAGCAGTTTGATGGCGCGCGCCTTGCCTAAATAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAGTAAGTTATAAGTGGGCGGT # Right flank : GATGGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTTCTTCCCGGCTCAGAGCCTGGCCAGGAACTCTTGTGTCACAGTGTCGCGGCCCCAAGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCTCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATTGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //