Array 1 155024-154122 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYI01000011.1 Paenibacillus terrae strain GHS.8NWYW.5 scaffold11.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 155023 32 100.0 37 ................................ GTCGTATCGGTCTTCATCGACCTTCTTACGACTGAAA 154954 32 100.0 35 ................................ TGCTCGTCGTCCTTACTGCGGGTCATCATGAACAA 154887 32 100.0 34 ................................ CGATCCTGGGGCCGTGGAAGGTCGAACGCGAAAA 154821 32 100.0 36 ................................ TTCGCCACTCACCAAAATGCAATCCTTAACTATGAC 154753 32 100.0 36 ................................ CGTGGTAAAAAGATCAATTACGGCGAGTGGATTTAT 154685 32 100.0 35 ................................ TCGCTAGGTGGTCGAAGAATCAGTAACGCCATTGA 154618 32 100.0 35 ................................ TGGCCTAGGCGTGGTCGGTGTTGGTGTAGGCTGCG 154551 32 100.0 37 ................................ GTTAACGAATCCAAGCAGTTCGTGAAAGAGTCCAGCA 154482 32 100.0 33 ................................ GCTGCGTCGATCTGCTTGAGATATTTTTCCTGA 154417 32 96.9 35 ..........T..................... TCTCCTTGGGAGGCAGATTGTACAAATGCCTTGTC 154350 32 93.8 35 .........T..A................... TTCGCAGTATTTCACATAGGAAACTTCCAGCGCCT 154283 32 93.8 33 .........T..A................... ATTTTATTTTATGAATACAACCACCTACTAAAA 154218 32 93.8 33 .........T..A................... TCGCTGGATTTGTCTGTTACACAGGCGGTGTAC 154153 32 96.9 0 ..................A............. | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 98.2 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TAACACGCCAAACCATCAGCGAGCATGTACATACGCAGCGTATTAAAACCGCCATCTACATGCTGACCGAATCCCGACTGACGATTCGTGAAATTTCAGAGTATGTGGGGTATAGTGATGTTTCCTATTTTCATCGGATATTCAAACGGCTGACAGGCTGCTCCCCATCCGAGTTTCTGGATGAACGGTCTTCGATCGTTTAGGCGTGACTTGTACAGTGGAAAGAGAAGGCGGAAAAAGGTCCGAAAGGGTTGCGAAACTGCGTTTTTAAATGTATGTTGGATTCAACTGGATAGACAACAAATACCTCATTTTATAAAGTGCGAATGTGAAGCTCACATAAAAACCCCGGTTCCTTCGCACCTCGAAATTTGTCGAAAAAGGCTTGGATGGGTTGTAATGGGTGAATGTCAATGCTTGATTCAAGCCTTTTCGGCATCGTTTATTGCGAAGAAGTATGATATTGATACCATTAGGGTATAAATCACTGCATTTTCGCT # Right flank : CAATTACCGATGCCCCAGCGCTTCGATCACAAGTCGCACTCTGTATGGAGTGCGTTTTTCACCCCCTTACTCTCCGCTTCCATCGCTCGTCCTTTCCATTTCCATATGCATTAATATTCCAAACTTTACCTTTATGCATTAGTTGCATATAATATTGACAGATGGTTAATTTTGGAGAACAATAGAATGCAAGAATATAAAATTATGGCATTTTTATGTGAAGGGTGGTTTATGTATGAAAATCACACCTACGATAAGAGCTGAATTGGAAAAATATCTAAAACAACAAGATTTAAGCATGACCGAGTTTGGGCATATTGCAGGCATTAATAGGGGGATAGTAAGTGGCATTGTAACTGGTAATAGTCCTATATCTGTTAACCAGCTTGACCGAATCACTGAGGCTATGGGTTTACCGGAAGGCTACTTCTACGACTTATATGTAGAAAACTACATCATCGAACGCTCCCCCAATATGCGTCGAATTGAGCGGTTGCTAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 416367-416666 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYI01000002.1 Paenibacillus terrae strain GHS.8NWYW.5 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 416367 32 100.0 36 ................................ ACGCCACCAGCTGGAAAGTCCCTCCGGTTTGACTTC 416435 32 100.0 37 ................................ TATATCTGGCCAGTCGGATTTCTAAATCTTCATTGTG 416504 32 96.9 33 ......................A......... TTTGCTGTTATTCCGTTGTTATCTGCCATATTT 416569 32 96.9 34 ............A................... AAACCATTCAGCACTAGGAACAATATCATCGGGA 416635 32 93.8 0 .......................A.......G | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 97.5 35 GTCGCTCCTTATGTAGGAGCGTGGATTGAAAT # Left flank : ATGATTATATTGAAAATTATAATGACTTAAAAAAGAGCCTAACGGAGAAATACGGCAAGCCTAGCAGTGATGATACCCTTTGGAAGGGAGAGTTATACAAAGATACACCAAGCCAATGGGGAATGGCTGTAGCGACAGGTGAATTGCATTATCAGGCAGCATGGGAGACAGAAGATACAGAAATTTTGCTTGATTTACAAGGTGATAATTTTGAGCCCCAACTGAGTCTATTGTATGACAGCAAGGAACTACAGCATTTGAGTGAGCAACAAAAGGATCAGGAATTGAAAAAGAATTTATAACAGAACAAGGCATGGGTTTCATAGGCTTGAGTGCGAACCCCAAGTGCACATGAAATCCCCGGAACATTCGCACCCCGCGCCAGACAAGGGATATAGCGATTTTTGGGTGTGATTTTTAAAATTTATTGGTGAGTTGAAAAGAGATTCGCGAAAAAGCGTTTACAAAACCTTGCTGGGTAAGGCTTTGTAACGCGTGCT # Right flank : GCACGTATTTCTCATACCACACATGTAGCACAGTTATGACGTTCCTCATTTTTCTTTGAAATAAAAAAGGTTTGCCTAAGAACTTGGCAAGCCTTTTTTATGTTGGTTATAAAATGCTAATAAACTCATGATGAACTAACTTTTTTATAAATGTGGAACTGTTCGGACCACCGCCCTAAAAAGCTGAACACCAAAAAAGAAGCCCGTTTTAACACAGACCCCTTTAATGTATTCCCACGCTAACATGCACAAATCACGCTATTCTGTTTCTTCAAACTGCATTAACACGGAAATGTCCTTGATCTCCAGAGCATGGGCGATCTTTTCAAGCATAAGCAAGTTTACTTCTTGTCGGTCATCACTGCTTAGTTTGGATATCCTTGCCTGTGAAACACCAGATAGTTCTTCTAATTGTTTTTGAGTGATACCTTTTTTTTTGAGAATTTCCTTTAGCTTGATTCTGATTTTTAACATTTGGATTTCCTCCATATATCGTTGAC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 420811-421249 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYI01000002.1 Paenibacillus terrae strain GHS.8NWYW.5 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 420811 32 100.0 35 ................................ TCTTAAAACAGAACCACCTGTACCTATGAATCTTA 420878 32 100.0 36 ................................ TATACCTATATTTTTGCTAAAGCGCTTGGCCTGTAC 420946 32 100.0 36 ................................ ATACACCGATATAAAAAAGGTCTGATCCTGCGCCAG 421014 32 100.0 36 ................................ CGTATCGGTTAGCAAGCTTGAGGTTGTATACATTTT 421082 32 100.0 36 ................................ ACTATCTTGGGATAGATAATAATAGCTTCTGCGCTG 421150 32 100.0 37 ................................ GTATCAAAAGCGAGTAGCCAATTCCATGCATTTGTTA 421219 31 87.5 0 .....................-A.......GC | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 98.2 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTTCATCTTGTGCTAAGGGAAGCATTCCATCATTCACATAGGTAATTAAATCTTTTTTTACCGGATCGGTAGAGCAGGCTGCCAAAATGGAAAAGCAACATAATACCAACATAAATACGCTAAGTTTTTTCATCTGTATTCCCCTTTTTATGTATGTTATGGGTAATTCGATGTGCCTTTTAGTCAAAAAGAACTATCCATATCATTTTATTATATCGTATAAATAAGAGAATGGTAGGGTTTTTATGGTAAAATAGTGTCGAAACTAAGTTGATTGATCTGTTCATTAAAAATAGGTAACCATATAGAAGCCGATTCGGTGCGAACCCCAAGCGCACATGAAAATCCCGGGTCCTTCGCACCTCGAAACTTGTCGAAAAGTGTTGGATTGGTTATCTATCCGTAAAAGTTAATAGTTGATCCAAGCTTATTGGGCATCAGTTTTTACGGTAATGTGTGGAATTGATATCGTTAGGGTATGAATTACTGCATTTTCGCT # Right flank : CACAGCGCTCAAAATAACTTTTTACGTGTTTTGCGAAAAGTACATTATGTGCGCTCAAGATGTGTGCTCAAGTTTTTTAGCTTGAAACTCAAAGAAGGCTCCCTTTTAATTAGGGGAGCCTTTTTCGTCGTGATTTTTAGGAAAGAAGAGTAGAGAGAGAAAAGTGTAGGAGGCGAGTACACATAGTTCCGAAACGGTGACTTAATTATCACGGATTACAAATAAGAATATTTTAAGAAGTATATTCCATTAGAACCAAAATTGTTTTATGATAGTGGTAGATAGCTTAGAAGTTTTCCAGATGTATCTGGAAATAACGGAAATTTAGTGAAACATTTGAGAGGGGATTTCAGTATGAATAGGTTCAGAAAGGCAACTTCGGTGCTGCTAAGCACGGTGCTCCTGCTTTCTTTCGGGATGACTGCGAACGCGAGTCAAAGCACAGAGGCTAAAACGGATCAAGCGATTAAAGCGGAGTCCAATGTTCAGCTAACAACCGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 860-354 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYI01000032.1 Paenibacillus terrae strain GHS.8NWYW.5 scaffold32.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 859 32 100.0 35 ................................ TTATTGCCGATCTTGCAAGCGTCCGCGATGTCGAT 792 32 100.0 38 ................................ ATGCCTCCTTGTTAGACTGCGTTTATAAATTCCGTGAC 722 32 100.0 35 ................................ ATCTACAGGTAGAATATTAAAATTTCCCGGATGAA 655 32 100.0 39 ................................ TTCATTTTTGATCTTCTGATACCAGCCGCTAGGGATAAA 584 32 100.0 36 ................................ CAATATACGTTGAGTACCAATAGGATAGATTTTGCG 516 32 100.0 34 ................................ CTATACGCGAATTGAGAGGGCCAGCCGTGCCGGA 450 32 100.0 33 ................................ ATTTAACATATTGTTAACCTCTATTAAATCTGA 385 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 8 32 100.0 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAGTTCCGTATTCGTGTCAATGTCATCTATCCTGGAGCGATTTCGACGAATATTGACGAAACTACGGAGAAATCGGAAAGGTTAAAGCAGATTACTATCCCTGTCCAGTTTCCCGAAGGAGGGCAGCCGTTGGCTAATGGGCCCGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTCTTGGCTTCCGATCATTCGCGCCACATTACCGGTGCACAAATTGTGATTGATGGGGCGGAATCCTTATTGTTTTAGCACTAAAGAATTCTCTGTGAGGGAAAAATGTTTTGTGGTATCCTGAGTGTAACGTCTTGGTTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGGATTAGAATCCACTTTCTATAATAGAAGTCAAGGGTGGATTCAAGCTTTTTTAGCATCGTTTTTTGCGAAAATGTATGGAATTGATATCAATAAGGTATGAATTACTGCATTTTCGCT # Right flank : TTATTGTCCAAGGCGATTACATACGGTCGGCGGGATATGGATTGTCAACACTAAACTAGACAATTTTTTTGTGGTGCCTCTGCTTGAACTCAGCCGGACTCAAGTAATCCAGAGAACCGTGAATCCGAATATGGTTAAACCAGTGTACATAATCATGTAATTCTGTGGTTAGCTCAGCAAGACTTTCAAAATGACGTTTCTTTACAAACTCCGTTTTGAAAATTTTAAAAGTAGCTTCCGCAACGGCATTGTCATAGGGACAGCCTTTCATGCTCAAAGAACGTTCAATCTGAAAAGCCTCCAGCGCATCGTCAATGAGCTTATTCTTGAATTCATTGCCTCGGTCGGTGTGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 90451-89869 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYI01000016.1 Paenibacillus terrae strain GHS.8NWYW.5 scaffold16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 90450 32 100.0 41 ................................ TGTCTTAGCGGCATCGAGATGAGCTTCTTTTTTTGTCTTGA 90377 32 100.0 35 ................................ ATTAAGCATCTGACCGTCTTGGGTAACGCTGCTTA 90310 32 100.0 35 ................................ GTCTTGGTCGGGTGAGGTTTGCGGTGTGATGCCAG 90243 32 100.0 36 ................................ ATTACCCTTCTGTGACGTATGAGTATCTCTCACAGG 90175 32 100.0 35 ................................ TCACTAGCCATTTCAGATGTCCATATATCTCTAAA 90108 32 100.0 36 ................................ AAAAACATTCTACATAACCTGCGAGTTCGAAAACAA 90040 32 100.0 38 ................................ TTAACAGGAGGCGCTAGAATCGTCTGTATGACCTCTTG 89970 32 100.0 38 ................................ CCCTACCTGTATATCTGCCTGCTGTGGTGGGTCTGTTT 89900 32 87.5 0 ............G.....AT...A........ | ========== ====== ====== ====== ================================ ========================================= ================== 9 32 98.6 37 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ACTCCGTCCTGTACCACCTGACACATGAAGGCATAGACACCCGGACGCTGGAGGAAACCGATCATTTCATCATCATGAAACAATTTATGAACAACAAGGAAAAGATGATGCAGGAGCTATTCGAAGATCCCCAATAAGGAATGGGTGACCTCAATAGCAGCCGCTTGGATGAGGAGGAAACAGTATGAACCCTTTTGATATTCCATCCGATGAAATCCAGAACAAACATTCACCGGATCTGCACCTCATTATTGGTTATCATGCTCATTTATGGTATATGTATAAGAGGAAATAAAATGAGTATTCTGCTCTTATGGTGAGGTGCGAATGTGAAGCTCACATGAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAAAACATTAAATCAGTTTTCTTCAGTAGAAGTCAATGGTTGATTCAAGCCTTTTTGGCATCGTTTTTTGCTAAAATGTATGGAATTGATATCATTAAGGTATGAATTAATGCATTTTCGCT # Right flank : GCCAAGTGGAAGTAAGAAGAATGAATGCCTGTAGTCATAGTCAAATATGTAAGCTGAATTAAAAAATGTACATGGAAAACTTAATAGACGGAATGGGGCTGTGCAAGCGAAGCACCATCCGTCTGTGGAGTGGCACGATAGGTGACTTTTACGAATTGCATATAGCAGATTGGGGATCAAGCGCCTTTGCATGAAATTTAAAATTAGGGTTCTTCCAGTATTATACTGGTAGTTCCTTTTTTTGTGTATTGAATATAGAACGCATGTTTGTATATAATATATGCAGAAGGGTTATCTATGTGCTTCACGATGCGAAATGCAAGCTGTTAAGACTATTTCAGATTATTGATAATATTTAAGTGTGATTTATGATTGTTATTTGCTCGTGGGTCTATTAATATAGTGAAGAGTTTTGAACTAATAGTTGCAAAATAAGATTTTCGCATGCGAAATAAATAACCTTAGGAGGACAACACGCAACATGTCAGAATCACAATTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 404835-404595 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYI01000003.1 Paenibacillus terrae strain GHS.8NWYW.5 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 404834 33 100.0 34 ................................. ACCACGGCGACTATTATTTTGCCGATCATATAAA 404767 33 100.0 36 ................................. CTCCTATTAATTGTTTTGTTGAGAAAGTCTATCCCA 404698 33 100.0 38 ................................. GGCAATGAGTCGAAACCGTCTAAGGCCGTTACTCTTAC 404627 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 4 33 100.0 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CTCCATTTTTGTGGAAGTAGGTGTGATCTTGTTAATTCTAATTACGTATGATGTAAGCACAGTGGACAGGGAAGGCAGAAAAAGACTGGCCAAGGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTACAAAATTCTGTGTTTGAGTGTATTTTGGATTCGACCCAGTTTCGCTGCTTGAAGTATGAATTAGAAGAATTGATAAACAAAAAAGAAGACAGCCTGCGTTTCTACAATTTAGGAGATAACTATAAAAAGAAGGTAGAGCATATAGGGACAAAAGAAGCTTACGATATGGAAAGCCCGCTGATTCTGTAAGGTGCGAATGTAAAGCTCACATAAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAAAGGATTAGAATCCACTTTCTATAATAGAAGTCAAGGGTGGATTCAAACTTTTTCAGCATCGTTTTTTGCGAAAATGTATGGAATTGATATCATTAGGGTATCAATTTCTGTATTTTCGCT # Right flank : AGCAGCATCAACCGTATATTGCACGCTTGGAACCTGGATCGGCTACACTTAGTTGGACAATAAAAATGAGGGCTTGTAGAATAAACCTATCATCCTAAGGAGCGGATCTCTACAATGCCGAAACAACGACGTACGTTTACAGCAGAGTTCAAGAAACAAATGGTGCTACTCTATGAAAACGGAAAATCCAGAGCGGATCTGGTGGAGGAATATGGCCTCACCGCCTCGGCGTTGGATCGCTGGATTAAACAAGGCCAAACCACAGGCTCTTTCTCAGAGAAGGACAATCGCTCGCCAGAAGAAAATGAGCTACTTACTTTACGCAAAGAAGTTCAACGCCTCAAAATGGAAAATGATATTTTAAAGCAAGCCGCGCTGATCATGGGACGAAAGTAGCTATCATCCAGAATAATCGGGATAAATACTCGGTATCAGCAATGTGTAACGTCCTGCAAATGGCAAGAAGCACGTTTTACTACGAGGCGAGCGAAGATTCTCCG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 414285-413517 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYI01000003.1 Paenibacillus terrae strain GHS.8NWYW.5 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 414284 32 100.0 33 ................................ TTTTTGAATGTATCAAGCATGGCGTTTAACGGT 414219 32 100.0 34 ................................ ATATTGGCTACGAAGTGGAGCAAACATTGGAAGA 414153 32 100.0 38 ................................ TATCATGCCTAATTCCATTTTACGTTTCTGTATAAAAC 414083 32 100.0 36 ................................ CCCGTAATAGCGTTGATCCTCAAATACCACACGAAT 414015 32 100.0 33 ................................ AGTTTATCTCTTGGTTGATTACAGAGAAAGGTA 413950 32 100.0 36 ................................ CAGTGCCTTGCGCAGCGCATCCCGCTCTGTCCCGCA 413882 32 100.0 36 ................................ GTCAAGATTGACGTCAACCGCCGATAATGGACTGAG 413814 32 100.0 34 ................................ TTTTTCACAAGGGCTACGCTCAGGAAATTATGAA 413748 32 96.9 34 ...........................A.... TAATCCGCGAGTTGGACTGCCAGAGATTCAGGCA 413682 32 100.0 36 ................................ GTTACTACAATGGCCTAGCGGCTGAGTATAACTGGA 413614 32 100.0 34 ................................ TCAGCGGACAGGACGATTTGCTACTGATCTTTAC 413548 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 99.5 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TCGAAGTTCGATGAGTTCTAATTCCTCTGGAGTTCGGTTGTCTTTCTCTTTGAAGGATCCCGATGCGGAACTCTGTTTCACCCATTTATCTAACGATGAAGGATTCAAATCATATTCTTGAATGATATCCTTTCGTGGTTTGCCACTCTGATAGAGTTGAACCATCTGTGCTTTAAATTCAGTGCTAAAGGTACGTCTTTCCTTTTTATTCATGTCCGTTCGCTCCTTCTAGAGTCCATCTGTAGTCTACTATATTAGACCACAATTTTTCTGTCTAGAAGAGTGTAGCCGATCCAATA # Right flank : CGTGGAGGGTGTAAGCGATTAGGCAGTTGCATTTAATTTGGGTATACGCCAAGAATCCTCAGAGGGAAGCCTCTGGGGATTTTTAAATGCTTGATTCAGCTTAACTATTGAATTTTTCTTTTAATTTATTTTTTTGGAGGGAAAGGAAAATAAATGTCGAAAAAGTAAAAGTAAATATATCTTTGTTCCTTTTTTATCAATATATTGGTAAATAGGTACTGGTTCAGAAGAACCGTTAAGTAGAGTGTATAGCCGACATTGAACAAAAGTATGGGCATATTCAGACGAACACCCCAACCATTGAATAAGGAGATTAAAACATGCAATATATTGCCCACATACGGGAAAGTGACCAAGAGATTCAGACGGTAGCAGACCACCTGTTGGAAACTCAACAGCTAGCAGAATCTTATGGAGACAAAATAGGTATCCGACATATTACCGGACTCGCTGGTATGCTGCATGATTTGGGCAAATACACAGAAAAGTTTCAAGATTAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //