Array 1 6505-4885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYJ010000003.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0233 NODE_3_length_396919_cov_108.441342, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6504 36 100.0 30 .................................... TGGGCGCAATGGGTTGTTAACTCAATCTTT 6438 36 100.0 30 .................................... ATTTGTTTTTGCCGGTAAAAAGCTGGATCG 6372 36 100.0 30 .................................... CTATGCTACACTATTTCTATACTAATTAAA 6306 36 100.0 30 .................................... GGTTTACATTCGATGTATCAATGCAATATG 6240 36 100.0 30 .................................... ATAATCGTGTTTAGCAGTGATATCCTTGCA 6174 36 100.0 30 .................................... ACTTAGCACAAACGAATTCTTAACGCACAT 6108 36 100.0 30 .................................... AAAAATGAAAATGAATGAAGTACAACTAAT 6042 36 100.0 30 .................................... TTACTACGCCATCAGGAAAAACGTTTCTGC 5976 36 100.0 30 .................................... ATATTCTGCATCTAATCGACCTTTTAACAC 5910 36 100.0 30 .................................... CTGATGAAAAGTCCGTATATCAGTCTCACA 5844 36 100.0 30 .................................... AAATAAACTTAGACTCATTTATTCAGCTCC 5778 36 100.0 30 .................................... TTTACCAATGAGCTGAAACAGCATGAGGAA 5712 36 100.0 30 .................................... AAAGGTGCAGGCGAATTACCGACACCGATT 5646 36 100.0 30 .................................... CATGTCAAAATAAGCAGTTACGAGCCGTTA 5580 36 100.0 30 .................................... CAAGCAAGCAAAAAATGCGGCTATCTCTCT 5514 36 100.0 30 .................................... TTTTAGATGGGAAGTATCTACAAGCTAGAA 5448 36 100.0 30 .................................... AGGACTTACTGAAAAAGCAGTGACGAAAGA 5382 36 100.0 30 .................................... AATAATGGAGTCATTACTGCCCTAATTAGT 5316 36 100.0 30 .................................... CGGTGGCGATTAGATGTATTTAACAGTCAC 5250 36 100.0 30 .................................... CCGTTTTCTGACGTCCGCGAGCCCATCTGA 5184 36 100.0 30 .................................... CAATCATCAAGCGGGGGCTACTAATAAGAA 5118 36 100.0 30 .................................... TCAGCCGAAATTGATGTATTCCCGTCTGTT 5052 36 100.0 30 .................................... GTTGTGTGTTACACGTCCTGCGTAATTCTT 4986 36 100.0 30 .................................... ATTTTTTAACGCTATTGTCTTAGGCAATAT 4920 36 75.0 0 .............A...........A.C..TGTTTA | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : GATAAGTTAACTGCAACAATTAGCGAGTTAATAGGTTACGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAAAAATTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGCTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGACCGGACGTTCTTTGAAAACAAAATATAGTTTAATTAACTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTCGGAGGACAGAAAAAATTCTACGAG # Right flank : AGAAACAAAAGTTTTTCATAAACCAGTTCTTAGTAGATTTTAAAAAGGAGACCACCACAATGAAAAAGGCATCAATTATTTTTATTTTTTGCGCACTCCTCCTCCTAATAGCGTGCTCAACCACCGAAAAACAAACACAAACCACCGAAGCAACAGGCACGATAGAACAAGTCGAGATAGAATCGATTTTAATCAAAAATTTCAAAGAAAAAAACAACCCAGAATCCAGCATACGTTTCCAAATCACAGACAAATACTACGACGAAGCGGGAGACAAAATAAAACTAACCGAACTAACCAAAAATGACAACCTAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTTCCCAGCCCAGATAGACCCAAAATACGTCCAAAAAATCATCGTGCTAAACAAATAAAACTCTCTCACCCGCAGAGAGTTTTTTCTTTCCCCCAAAAAATAAAATCAAAACCCTTGCCTTGGTGTGAACTCCAAGGTTTATAATTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1158459-1157849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYJ010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0233 NODE_1_length_1439256_cov_77.933975, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1158458 29 100.0 36 ............................. TCCTTTTCGTACCAGAGTTCTAAATAACCTTTCTTA 1158393 29 100.0 34 ............................. AACGTTTTCCGCATGCTATGCGTACCCAGATTCT 1158330 29 100.0 35 ............................. GTTTTAATTGATCTAATAATCAAGTTGCCACGTCT 1158266 29 100.0 36 ............................. TTGTATAACTCAACGTTAGACCTCGGCCCGGTTTGG 1158201 29 100.0 34 ............................. CCCCCTGTATCTCCTGTAATCAGCTCGTGTATAG 1158138 29 100.0 35 ............................. TAGCCCGCGACGGCTTTAATGTCTTGAATGCCTGT 1158074 29 100.0 37 ............................. ACTATCAAATTCAAATCGACGAGCAAACGAAGAAAAA 1158008 29 100.0 36 ............................. GAGGAATCAAAACTGATTGTTTGTTTGAGTGATTGT 1157943 29 100.0 36 ............................. ATTGGCTATAAATCAGTAGCTGATTTTGAAGTAACA 1157878 29 86.2 0 ...............C......CC....C | A [1157853] ========== ====== ====== ====== ============================= ===================================== ================== 10 29 98.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGAAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACCCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGACAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGATCCCAATCCAAGTCTTTTCCCCTACCACCTAAACCAACAAAACCACAACCAACGCCACAACCGCCGGCAAGCCCTGTTTCACTAAAATTCCTTTAGAAGAAGTCAGCCCGCCAAAAAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGTCCCAGCGAAAAACAATCCCCACACAAGCCCTGCCGTAAGAAATCCATTATAAAGTCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCAACACCAAATGTTTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGGAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTGAAAATAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1175374-1174564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYJ010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0233 NODE_1_length_1439256_cov_77.933975, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1175373 29 100.0 35 ............................. ATAGTTTTCGGGCATATTTGCAACCATAGTATCAA 1175309 29 100.0 37 ............................. ATGTTTTCATTGTAGGTATTGGTACAACATCGGAGGA 1175243 29 100.0 35 ............................. TCAAATCTAACGTAGTGAATATTTAATTGAAGTAG 1175179 29 100.0 34 ............................. GTGCTATCAATAAATAGTGTGAAAGGGACATTGT 1175116 29 100.0 35 ............................. CCTCGCTAACAGTTTCAGCATCAACTTCATAACAC 1175052 29 100.0 38 ............................. AATAGCAAAATCTTTATTGTGTACTGTGACACGCGTTC 1174985 29 100.0 36 ............................. TTCAATTGGTTTCGTTCACATAGCTTAAAGTTTTGC 1174920 29 100.0 37 ............................. TGGATTGTCCGAAACGGTAAAACGACGCACACGAAAG 1174854 29 100.0 37 ............................. CTCATTGAAAAAATTCAATTTGTCGGTTTCCAAGATG 1174788 29 100.0 36 ............................. ATTATTCAAGCACTAGATGTTGCTAAAAACGCATTT 1174723 29 93.1 39 ..........T...A.............. AATAGACCTAAGTGTGATATGATTTTTTTGAGGGGAAAA 1174655 29 89.7 33 .......T....C...A............ CCTGCCATCAGTTGCTTTATTCCTTGCGATTTC 1174593 29 79.3 0 AC.....T......A.A......A..... | A [1174569] ========== ====== ====== ====== ============================= ======================================= ================== 13 29 97.1 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTACTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGACCGTTTACAAAACTCCAATATTAAAGAAGTCATCACATCTGACTCTATTGATCTTCCAGAAGACAAGCAATTCGACAAATTAACAACCATTTCTATCGGTCGTATTTTAGGACGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAAGGGTTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTTTTGGTTGTCTGTCGACCTTTGGTAGCGTGAAAAATGCTGGGGATCGACAGAAAGGTGAGAGTGATTGGCGTGGCGGGAGTTTAGTGGTTTTTGCTTTTGAAAACCATGTCGGGAAGGAGGGATTTTCGTTGGTTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : GAGATTTGACTTTTAAAACCCTTACTCATCTTCCAACCCGAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCCCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCTGAACCTCCAACTACACCACACACTCAACCTATGCTAAACTCAAAGAGAAAGTCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAATGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACTATCACCATCCGAGCAGATTACAACATCCCGAAAAACATGGAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAACAAAGACATTGGCAAAGACGGCAACACCATTAGCGAAGTGGAAATCTTAACTTCCTACAAAGGCGACCTAGAAAAAGGCGATAAAATAGACATTTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //