Array 1 1359325-1355523 **** Predicted by CRISPRDetect 2.4 *** >NC_010424.1 Candidatus Desulforudis audaxviator MP104C, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1359324 37 100.0 37 ..................................... TTTCTTCGGCGTCCGCGACCAGCCGGCCAGCGTCGAA 1359250 37 100.0 37 ..................................... TTCTCCCCCTTTCTTACCCTCCCCGCAATCCCCGGCT 1359176 37 100.0 35 ..................................... GACGTGTGGTCAACCCATCCCCGCAGAGCAGCTTG 1359104 37 100.0 39 ..................................... ATGAGAAGGGCGGCCAGGTTTTCGAGGCCGCCCTGGACG 1359028 37 100.0 35 ..................................... CTTGTGTATCGCGGCGAGCGTTGCAAACCAGGTGA 1358956 37 100.0 37 ..................................... GCCAGCACCTGCAAGTAAGGCCGGCGATTGCCGGCGC 1358882 37 100.0 39 ..................................... GGCCGCGGGTTAAAATTGCCTTGTAGTAGTCCGGTATGC 1358806 37 100.0 34 ..................................... CCAAGGATTACGTCGTCGGGGACAAGGCGGTGCG 1358735 37 100.0 39 ..................................... GGTAATTGGGCAACGCCCGTACCGCCGGCTCTAGAATCG 1358659 37 100.0 36 ..................................... GTTAAGACGGCGGACGAGTTGTTGCATGCCGGGTCC 1358586 37 100.0 35 ..................................... CAGCATGGTCGTGGTCGGCTGGCCGAAGATCGAAG 1358514 37 100.0 37 ..................................... TGTTGCCTTCCGCCTTCGCACGAAGGCGCTCCTCGTA 1358440 37 100.0 37 ..................................... GTTCTACGAGGGGTTGGCTGGTAGGTGTCCAGAAGCG 1358366 37 100.0 35 ..................................... TAAAGAACTTGCGGAGTATGTCGCATGGGACTGGT 1358294 37 100.0 39 ..................................... TTCCGTACAACCACAAATTTGACAGATAAAACCAATTAA 1358218 37 100.0 36 ..................................... CCGAAACGAAACGCACTGCCGCTGGGATTTGTAACA 1358145 37 100.0 37 ..................................... CGCCAGCAGCCGAACCGTCAATGTCCTTGTCTCGGTT 1358071 37 100.0 38 ..................................... GGACGGCTTTGCTCCGGCCCCGGCATCCTGCGATTATG 1357996 37 100.0 36 ..................................... CTGAGCAGACACACCTGGGCCGGCAACTTCGTGCGC 1357923 37 100.0 37 ..................................... TCCAAAGCGGCGTACTTGTAACTGGTTTCAGTCAAGC 1357849 37 100.0 37 ..................................... TTTGAATTACTACCCTGGCAAGAGAAGATCGTCCGCG 1357775 37 100.0 37 ..................................... GAGCCGGAATCTGGCAGCCCGCGAAAGGCGGGAGGAA 1357701 37 100.0 37 ..................................... ATGCCACCTTCCCAGTGCTGTGTGTATGCCTGGGCCG 1357627 37 100.0 34 ..................................... GCACCACGATGTCACAACTCCGCAGCGCCGACAT 1357556 37 100.0 40 ..................................... GCCGTAGTATTCGGCGGATCGATCTCGACGCGCAGCCCCT 1357479 37 100.0 37 ..................................... GCCATAGGAAGGCATAAGTAGCTTGGTCTCCTAAAGT 1357405 37 100.0 37 ..................................... CCATTATCGTCGCGCCCGCTGGCGCATCCACCAGGCT 1357331 37 100.0 35 ..................................... ACTGGTCAGATCGATCCGGACCGTATGGAGTTACT 1357259 37 100.0 37 ..................................... ATCATTGTTCTGCTCTGCACTTCCATTGCGCCGCCGA 1357185 37 100.0 38 ..................................... CGAACACGCCGGGCCAGAAGGTGCTTGCGGCTGAACGG 1357110 37 100.0 37 ..................................... ATTTAGTTCGTAACATTTGCGACTACAATATGCGTTC 1357036 37 100.0 36 ..................................... CGCCCCGTGCTTCTTGCGCTGCATAAGCTATCACCT 1356963 37 100.0 38 ..................................... TTTATTTTTGAGATTGAGCGAAGTTGTGGGTTGTATCC 1356888 37 100.0 37 ..................................... GGGGTAGGTTCAGGTCGAACACGAAGAAGTGCGTGCT 1356814 37 100.0 35 ..................................... TTCCCAGTCGGCACTCAAATTTTAATTCAGCAACT 1356742 37 100.0 38 ..................................... GTTGACCGTACCGGTTACGGCGATCCGTTGCGCGTTGT 1356667 37 100.0 34 ..................................... CGTCAAACGCTTTCAGGATTGAGGATTCATCGCA 1356596 37 100.0 37 ..................................... ATTACCTCGGCGACTTGAGGAACTACGGCGTTGCCGA 1356522 37 100.0 37 ..................................... TTTATTTTGTCCGACAGCGTGTTTAGGCCGATTCCCA 1356448 37 100.0 36 ..................................... CGTAACACGGATTGTCGAACCATCGGTTGCAGTGGA 1356375 37 100.0 36 ..................................... GGTACTGACACGAACGCCGACACCTGCCCCGGCACC 1356302 37 100.0 36 ..................................... GGATGTTGTTACCGGAAATGGTGTAGTCTGCTCTGT 1356229 37 100.0 39 ..................................... TCGTATACCACATCGGCGTTGATATAGCGGTAGGCCCCG 1356153 37 100.0 36 ..................................... ATCCAAGCATCCCCGATCCGGGATGCGGCACCAGCA 1356080 37 97.3 38 .................A................... CTACCACCCCAAGGTAGTGTGTTGCATTTCATGCAACA 1356005 37 100.0 40 ..................................... TTTCCCTGACGCACCGCCATTCCTGCAGGACGTACCGCCT 1355928 37 100.0 35 ..................................... GTGCTTCCTGTTATGGCAGGCAGCGCAAACGCTCT 1355856 37 100.0 39 ..................................... CGACAGGTTGCGGTTGAAATGGTAGGGGTCGGTGAGTAG 1355780 37 100.0 35 ..................................... CGGTTTTTCCGGGGCTTCTAAAAAGTCACGGCACC 1355708 37 100.0 36 ..................................... GCGAAGCTTCCCCCGAACGCCGTTGCCTGATATGTA 1355635 37 100.0 39 ..................................... AATCAATGTTCTCCTTGTCTGGCCCACCGGCCCACCTGC 1355559 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 52 37 99.9 37 GTTTCAGCGACCGACCCGACGAAAAGGGGACTGAAAG # Left flank : TTCACCGATTGACTACCACCGGCTATGCCCTCGTAATGGAATCCCTTTATGAATTCCCGGTCAACATCGGCTGTCTGGTTTACGGCAGTTTCCGGGGTGACCGGCTCATCATCAACAAGGACTTGCACATAATTGATGACGAACTCCGCCAGTGGTTTATCGAATCGCGGGATGAAAAAGCCCGCATGGTTTACGAAGAGATTGATCCCGGTTTTCCAGCGGAATGTTATCAGGGTTGTCATTGTTATGCAGCCTGCCATGGGTAGTTTTTCGAAAATGGACTCTTAGGCATAGGTTGGGATGGTCTTGGATGGCACCGTCCCCAGGAAACGATCCTGATGGATCAGCGCGATCACTGTGCTACAGGCGGATCAGAGGTTTTCGCAAAAAGAGGGTGATTTTGTGCAGGTAACCCAGTTTCGAAGAGACTGTGTATTTTGCTCCTTGTGCGTAGGCTGGAACCCTTGCAGCGCCTGGTTTCTTTTTTGACGCCAGGGTCT # Right flank : TGATCGTTTTGGCAAGCAAGCGTGGAAGCGACTTGCGGTTTCAGCTACAGGTACCTTGTTAATGCCTCAATATGCTTGCGTTTCGCACATCCAGGAATATACTGTAGTAGACAACCTTCCTTAATAAGGAGTGTGCGCCGTGATCAGAATGCGGCCGGGGCGGGTTGTGGAAGTGGCAGAGCAACGCCCGGGGGTGTCCGAGGTGCTGGTGGATGTCGAGGGCCGGGTGGAGCGGGCGGTCAACTACGACCTGGTCACCGGGCCGGTGGGGGTGGGGGACCGGGTGGTCCTGAACACCGCGGCGGTGGCTTTGGGGCTCGGGACCGGCGGCGTGCATTTCGTGATGGTGAACCTGGAGCGGCTGGAGTGGGACGGTCCGGAGGCGGGGCACATCATGAAGCTCCGGTACACACCGTTTCAGGTGCAGGTGCTGGCGGTGGAGGAGGAGGCGAGCCCCCACGCGGATCGGTTGCGGGACTGTGCAGGGCTGGACGGGCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCGACCGACCCGACGAAAAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1900896-1898301 **** Predicted by CRISPRDetect 2.4 *** >NC_010424.1 Candidatus Desulforudis audaxviator MP104C, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================== ================== 1900895 30 93.3 63 T.......A..................... AACTTCCAGGGGGTTATGAGATTCGGGCTATCTCCGTTTCCAGCCTACCTTTTTCGCCTCCTG TA,GA [1900883,1900889] 1900798 30 100.0 36 .............................. TCCTGTCAGCCCCCCTTGACTTGGTTTTGCTACGAG 1900732 30 100.0 37 .............................. GTGATGGTGAAAATGAAATGCTCCGCGTCCCGGAACA 1900665 30 100.0 35 .............................. TTTGGTGGAAGGCACCGTGCGCGTGACGCACGCGA 1900600 30 100.0 36 .............................. GCAAGTGCCTAACCCGGCTTTATCCATATTGGCCAA 1900534 30 100.0 37 .............................. CTTGTTGAGTAATCCCGAACGTTATCTTGCTAATGGG 1900467 30 100.0 38 .............................. TTAATTCAGGCCCTGTAGTATAGATATTCTCAAATTGA 1900399 30 100.0 36 .............................. TAAAACTGACGATTAAGAGGGAGGATTAACATGTTA 1900333 30 100.0 36 .............................. CAGTCACACTCGCGGGTACTGATACTGATAATGCTA 1900267 30 100.0 36 .............................. TTCCTTTTGTGGCCAGGATGAGGGGCTGGCCACAAA 1900201 30 100.0 37 .............................. TGGGTCTTAAAGTGCGCTGGGCACATATAAGCCCACG 1900134 30 100.0 37 .............................. CTTTCTGACGGTGAAGGGATGTACTCCGGAGGCATAG 1900067 30 100.0 36 .............................. GAAACACCGATGCCGGCAATCCTTGAGCCAGCTGGA 1900001 30 100.0 35 .............................. CCCGGAGGGTTTGAATCCTATTCGTGATGCCCTCC 1899936 30 100.0 37 .............................. TGCTTTCACCCTCAGTAGTCACGATATCCACTGTCAC 1899869 30 100.0 36 .............................. AATTGCTTTTGTCGTTCTTGAAGAAGCGGTTGAGCA 1899803 30 100.0 38 .............................. AGTGTCGCAGTATCTAAACGATGGCTGGACACTGGAGG 1899735 30 100.0 36 .............................. GGTCCCGCGCTCCTCCTTTGCCAGCCGGAAACACCG 1899669 30 100.0 40 .............................. CTAACATCCGCCGGTTTCTGATCGGCCCGGCTGCGCGACC 1899599 30 100.0 36 .............................. CCGGGAAGAGGAGGTCAAGCGTAGCAGGATCACGCA 1899533 30 100.0 37 .............................. GGGCCGCTTCCACCGCCACCTGCGCCGAGGACGTGGT 1899466 30 100.0 37 .............................. GATTACGGCGTGCCGGACAAATTCCAACCTGGCCCTG 1899399 30 100.0 38 .............................. TTCTATTGCAGGTTTACGATGATTACCGTAATTTAAAC 1899331 30 100.0 38 .............................. TGGAACCAGCGGGCGCCTAAATTCGAGGCTAGGTTCAG 1899263 30 100.0 37 .............................. CCTGCCCAAAGTCCATAGCCAAACCCACTGTGGACTT 1899196 30 100.0 38 .............................. GGGTGAGGGGCTGGCCACAAAAGGAAAAGCCCCTCCGG 1899128 30 100.0 37 .............................. AATTTCGGCGAATCTTAGTTTGTTGAATTCTCCTGTC 1899061 30 100.0 36 .............................. TGGACTTTGGGCAGAGCGGTTAGCTCTGCCGCAGGG 1898995 30 100.0 37 .............................. GGCTCTTGCAGATGATCTGCCCGTTGAGGTTCTTTAG 1898928 30 100.0 37 .............................. CGAGCCTTCAAGTTCAAGTACGTTGACCGGCTACCCG 1898861 30 100.0 36 .............................. GACAAATTCCAGCCTGGCCCTGAACGTATCCACCTG 1898795 30 100.0 36 .............................. CAGTACGGGAGGAGCTGGCTCTTTGACTTTGCGAAG 1898729 30 100.0 38 .............................. GTGGCCACCCGGTTAGCCCGCCCATCGGTGCCAAGGGA 1898661 30 100.0 37 .............................. GCGGAACTCCAAGGATTTCACGAATGACAACAGTGAA 1898594 30 100.0 36 .............................. TGGCTTTGGGGAACTCCTGCCCGGTGCGGCGGCTCA 1898528 30 100.0 36 .............................. GAGCGACGGTAACAGCGATGCAGAGCGGTTTAAGAA 1898462 30 100.0 36 .............................. CTATGAAAGCAAACACGCTGGCGGCTGGCATAAACC 1898396 30 100.0 36 .............................. CGAAACAGAAGTGGTTCTGGCCCGCGGCGCTGGCCG 1898330 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================================== ================== 39 30 99.8 37 GTTTCCAGCCTACCTACGAGGGATTGAAAC # Left flank : CCTGACCGAAAGCACGGAACGCTTGGTGACCGAGTATGACGTGATGATGGGTAACCCCCCGGACCATCAATTGCTCATTCCAGGAATTGCGGAGCACATCCACCGCACCGGCCGGGTGCCAGAAGGTACCGCTACCGATCGTGGTTTCTGGAATGCCGGTAACGAAAGCGCCTTACAAGCTCTGGGTATACGTAAAATCAGCCTGCCTTATAAAGGTAAACGCAGTCACAGTCGTACCGGACACGAGCGCCAGTCCTGGTTTCGGCGGCTGCAACGCTGGCGAGCCGGTCAGGAAGGAACGATCAGCGTGCTGAAAAGGCGATATGGACTCAAGCGAACGCTATACCGCGGACTGGCCGGATGTCGCCGCTGGGTGGGCGGGGCCGTCTGGGGATACAACCTGAACCGAATCGCTAAGTTGATCTAAGCCCAGGCAGGAACGTTAAACCATGATCAAATTGTCAAGGATCAACTGCCGAGAAGTAGTCGGCAAAGTGCTT # Right flank : GAGTGCGCCGGACTCTGCGCAACCCCTTCGGGGGTATCACCCTCTTGTTGCGTTGTTTTTAGTCCGGGCGAATAACCGCAGAGTGCCAGGTGGCCGTGTGGTTTTCCCAGGCGGTCGTCGTGCTGTGGGGAAGGCCGATGGTGCATCTCACCTACCCGCCGTTGCTGGGCTGGGGGGTGAGCGGGGTGGTCCTGACGTTCTGGGTGCTCCGTAATATGACCCTTTCCGTGTTTGAAGTTCTGCATCTGTAGGATTGGTTTGCTGTCGGGATGGGCGTTTGTGAATAGCTGAATTGTGTCGTTATTGGAGGGAGGATGTGGCGGTGGCGAAGGCCGAGGCGAAATCGAAAGTGATGGTGGTGCTGGTAAGCGAGCAGCGCATGCAGAACCTTATCCCATGCTTTCAGAAGGACAGTACAATCACGAACGTCCACCTCGTACGCTCCAGCGATGCCGATAACCCGGATTCCCGTCTGGGCAAGGCCTGGTCCGACACGAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 3 1904413-1902591 **** Predicted by CRISPRDetect 2.4 *** >NC_010424.1 Candidatus Desulforudis audaxviator MP104C, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1904412 30 93.3 36 T.......A..................... CGTTCCTAAAACGACCTATTACCGACGAATAAGAAG TA,GA [1904400,1904406] 1904342 30 100.0 36 .............................. GGTGTTACTACAGTAATAAGCTCCAACCTCGGCTGT 1904276 30 100.0 36 .............................. TAGGTATAGTACACCGCTTGCTTGCAGCGAATGCAG 1904210 30 100.0 35 .............................. GGTGTTTGCGAGCCTTAGACCCACGGTTTCGGCAA 1904145 30 100.0 36 .............................. GAGTTTACAGGGGAAGGGTACAGATCGGGAGATTTA 1904079 30 100.0 36 .............................. GACGGGAGCGGGTGGTGCCGCCGAGAGTCCAGGTGG 1904013 30 100.0 36 .............................. CCAGCGAGGACGTGGTTGAAACACGGCGCGAATGTG 1903947 30 100.0 36 .............................. GGAGCGGCGGAAGGGGTGAGGTAAATGGAGTAGATA 1903881 30 100.0 36 .............................. ATGGTGAGAGCGATTATCGAGGGCCGGAAGACGCAA 1903815 30 100.0 37 .............................. GGTCTAGGTTGCAGGCACGGATAAGTGCATTGTTGAG 1903748 30 100.0 36 .............................. CACAGGCGTACCACGCCGTTTATTTAGCACAATTGT 1903682 30 100.0 36 .............................. TTCCCCGGAATCGCTTCCAACCGCTGTGACAAAGCA 1903616 30 100.0 37 .............................. AGTAGTAGTACACTTGACAACCACCTTTAGTATGTGG 1903549 30 100.0 36 .............................. TTTTGCAGAGGCCTTCGCGCGAAGCGATGGCTCTGA 1903483 30 100.0 36 .............................. GTTCACCTTTTGCCCCTTTGCCCTTTTGGGTGCTGC 1903417 30 100.0 36 .............................. GGCGGAAGAAGGCCCAGTACATCCAGGGTAGAGTGT 1903351 30 100.0 36 .............................. ATTCTTTGTAGCTAAGTGATGACATGGTTTGCCCTC 1903285 30 100.0 36 .............................. GCGAATGAAAGGAGGCCCCGATATGCCCAAGGTTTG 1903219 30 100.0 38 .............................. TCCCACATAGGTTGCCGCTCTCTATATTCACAGTCAGG 1903151 30 100.0 37 .............................. CATTGGTGGTGTCCCCCGGCGACCGCCGAAGGAGTTA 1903084 30 100.0 36 .............................. AGTGCTAGACAAGCACTGGCCCGGAGTGCCGAAATT 1903018 30 100.0 36 .............................. GGGAGATTGCGGACATCTCCATCGGACTGTAAAAGC 1902952 30 100.0 36 .............................. ATTCGTGTGCGCATTGCAGTGGATACTGATGTAACA 1902886 30 100.0 36 .............................. AGGAGGCATATATCTTTGGTAACATCAAGCACCGAT 1902820 30 100.0 38 .............................. AGTGACTTTGTAGAGCGTGTTGCTCACGATCTGTTGAG 1902752 30 100.0 36 .............................. GTTTTTAGACCGGAGGGGAAGTTGGGGGTTAGGAAA 1902686 30 100.0 36 .............................. GTGGGATCCGAGCCGGGCGGCTAGGAGTTCAAAGGC 1902620 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 99.8 36 GTTTCCAGCCTACCTACGAGGGATTGAAAC # Left flank : CCGGATTTTAGTCAGGCTGGAGGGATGGGGCACCGGCTTATTCCAGGGAATGCGACAAAACCGGCGCCAGCTGATCCGATCCTTAACCAGAGCACAGACCTGCCGGTCGCTGAGTCTGTACTGGTGCTTGAGTGCTGTCATACGCAAATAGGTTTCCGCCGGTACGGACGGTCGCCCCAAACACCGATGGTACTTGTCCTGAAATGGTTCGAAGAAGCGCTCATCGTCCAACCAGGCGTCGAGTTTGGCCAGATCTTCCGGGAGTTCAAGCACCTCCGGCGGCAATATGTAGTCCAAGAATGATACTTGTCGACTTTCTTCCTGTCGGAGGCATAGCATTACTGCTCACCTCCGCAGGAACCGAAGTTTTTATGTTGAACCATGATCAGCATAGGGATTCCCTCCTGGTGTTTGTTTTGGTTTGGTCACCTTAAACAATTCGCCACGGAGACCGGAATCCCTTGATTTATCTAGGTTTTCAAGGATCTTTATGGCTGAGT # Right flank : TCCCTTACCGATCGGGAGGACGGCTGCTCTTCCCGAGTTTCCAGCCTACCTAGATTCTGCTGAAAAACTCAGCCATAAAGATCCTTGAAAACCTAGATAAATCAAGGGATTCCGGTCTCCGTGGCGAATTGTTTAAGGTGACCAAACCAAAACAAACACCAGGAGGGAATCCCTATGCTGATCATGGTTCAACATAAAAACTTCGGTTCCTGCGGAGGTGAGCAGTAATGCTATGCCTCCGACAGGAAGAAAGTCGACAAGTATCATTCTTGGACTACATATTGCCGCCGGAGGTGCTTGAACTCCCGGAAGATCTGGCCAAACTCGACGCCTGGTTGGACGATGAGCGCTTCTTCGAACCATTTCAGGACAAGTACCATCGGTGTTTGGGGCGACCGTCCGTACCGGCGGAAACCTATTTGCGTATGACAGCACTCAAGCACCAGTACAGACTCAGCGACCGGCAGGTCTGTGCTCTGGTTAAGGATCGGATCAGCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 4 1912125-1906154 **** Predicted by CRISPRDetect 2.4 *** >NC_010424.1 Candidatus Desulforudis audaxviator MP104C, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1912124 30 83.3 18 T.......A.......G..A.........G AAATTGCGGTCAAAATGG TA,GA [1912111,1912117] Deletion [1912077] 1912072 30 100.0 35 .............................. TCTTAACCGGCCAGGTCCTGATCCGGGTCGGCATG 1912007 30 100.0 35 .............................. GCTTCCTCGCCGCATGCTTCGCACGGTCCATAGTA 1911942 30 100.0 36 .............................. GCTACTTTGATTATACTACACTTGTCGTTTAGTGAG 1911876 30 100.0 36 .............................. CCCGCAATCAAAACTTCACCGTCCAGCGGATCATTA 1911810 30 100.0 35 .............................. GCCGATTCTGGATGCCGCTCTGGGTGACGAGTGGA 1911745 30 100.0 36 .............................. GGCGCGGGTGAGTTTCTACATGTAGAAACTACAGCG 1911679 30 100.0 36 .............................. ATTTTTTTCGGCTTGATACAAGGATATTACAAGCGT 1911613 30 100.0 36 .............................. AACTAACACTCTAGTTCATGTTCGTTGGTTCGTTGG 1911547 30 100.0 36 .............................. TCGGGGAGGACTAGCTCGACAGTGTTTTTCTTGTCG 1911481 30 100.0 35 .............................. GAAAAAGATCAGCAGCGCTAAGGCTTTCTTTAGCC 1911416 30 100.0 35 .............................. ACTAAACCAGCACTAAAAGCAAGGGGGTGACAAGA 1911351 30 100.0 38 .............................. GGCTCTACACGAACTAGGATCACAAGTGGATACAAAAA 1911283 30 100.0 35 .............................. AGTCTTCACACCTCTAATGCTGCCCCAGCGATCTC 1911218 30 100.0 36 .............................. ATTCTTTGTATTTCCATTCTTCGGGATAGGATAGTC 1911152 30 100.0 37 .............................. TGCCGAATCTCGGCGAATTTTATTCTGTTGTATTGAC 1911085 30 100.0 36 .............................. CCCTCCGTAGGTTTTACTCCCGGAGGGGTTGGGGTG 1911019 30 100.0 40 .............................. ATCCGGGGCTTTGGGCAGAGTGGTTAACTCTGCCCGAAAA 1910949 30 100.0 37 .............................. TGCCGAATCTCGGCGAATTTTATTCTGTTGTATTGAC 1910882 30 100.0 36 .............................. CCCTCCGTAGGTTTTACTCCCGGAGGGGTTGGGGTG 1910816 30 100.0 37 .............................. TTAGGCAAACCGTTCCCCTAACCGTTCCCCTAACCGT 1910749 30 100.0 36 .............................. CTTCTGTCTGCCTGCTTGCTTGTCGCTCCTTTCACC 1910683 30 100.0 35 .............................. AGAGCTAAAGGCTGCTATGAAATATGGCCTATCAC 1910618 30 100.0 37 .............................. AGGGCAATCAGCCGGTACAACTCATCATCGGGCAGCT 1910551 30 100.0 35 .............................. CAACGTACAGCTCTGTACCCAACGGGATCACCCGG 1910486 30 100.0 35 .............................. GAATTATTCCGGCCGAAATACTCTCCTGCACCTTC 1910421 30 100.0 35 .............................. GCAGCCGGCGGCAGCACTCCAGGTCCTCGCGGAGC 1910356 30 100.0 37 .............................. AGGTCTTGGCCCGCTTCAAGCCATTCATGATGGCCTC 1910289 30 100.0 36 .............................. CGTTGCTGAGTTAGAAGCCACCTGCGCGGCGCTACG 1910223 30 100.0 36 .............................. TTCGGGACATTAAGTTGCTCAACTCACTTTGCAAAA 1910157 30 100.0 36 .............................. CTGGAGACAAGCGGGGGTACTGCTGGGGAAGCGCAG 1910091 30 100.0 36 .............................. TTCGGGACATTAAGTTGCTCAACTCACTTTGCAAAA 1910025 30 100.0 36 .............................. CTGGAGACAAGCGGGGGTACTGCTGGGGAAGCGCAG 1909959 30 100.0 36 .............................. TAAATCCCGGCAGGAAGAAGTAAAGAAGGAAAGAGG 1909893 30 100.0 36 .............................. CATAGTAACATAAGAGCTCCAGTCACACGAAAATAC 1909827 30 100.0 35 .............................. CCTTTTTAAGCAATTTGCTCATCACTGCCACCTGT 1909762 30 100.0 36 .............................. TAATCTCGGTCCTTCACGCCGCCGCGCGCGAGCACC 1909696 30 100.0 37 .............................. AGAATAAACGCGCCGAACAGGATCAGCATCCCGGATA 1909629 30 100.0 36 .............................. CTGGAGACAAGCGGGGGTACTGCTGGGGAAGCGCAG 1909563 30 100.0 37 .............................. GGACCCGGTGCGTCCGGCTAGGAAAACATGCTCATTG 1909496 30 100.0 40 .............................. TAAATCCCGGCAGGAAGAAGTAAAGAAAGAAGGAAAGAGG 1909426 30 100.0 35 .............................. ACTGCTCGTAGAACCGGCCGACGATCCCGTGGGAA 1909361 30 100.0 35 .............................. TCAAGCACTTCCACCCGCAAAAATGCAGCATTGCA 1909296 30 100.0 36 .............................. GTTTGCAAGGAGGAGTTATTTGCAGAGGATTTCCGG 1909230 30 100.0 36 .............................. AACATCTGGATCAAGGTCTGGCTGAAGGGCCAGGCC 1909164 30 100.0 36 .............................. CCTGATCTGCCGCAGGCGGCCGAGAGGTGAAGGAGG 1909098 30 100.0 36 .............................. AAGAGGCGGCAAAAGTGGCACTGAAGCAGGGCTAGC 1909032 30 100.0 37 .............................. TCAAGAATCCGGGCACCGATCATTGAATCCCCTTTCA 1908965 30 100.0 35 .............................. GTTTTTGTTTTGCCAAGGGTTGTCTGCCCCGTGCG 1908900 30 100.0 37 .............................. ATCCCGGCCAGGTTGTGGGCCCAGTTGCCCCGCCATC 1908833 30 100.0 36 .............................. GTCAATCGGTCTCGCTGACCTTACGGCCACTTCTCC 1908767 30 100.0 36 .............................. GCAATTCGTGCATGCGCCCGAACCTGCTCGATCACT 1908701 30 100.0 37 .............................. GCCGCCAAGGGGGATGAAGGTCATCGTTGCCCAAATC 1908634 30 100.0 37 .............................. TTGATACTTCCCCAGCGATCTTTTAACATTTTTTATC 1908567 30 100.0 36 .............................. TGGGTGCGGTGCAGGACGTGATAGACTGAACGGCAC 1908501 30 100.0 36 .............................. GCGCCTGCTGAATTACACGTGCAGTCTGCTGGTTGT 1908435 30 100.0 36 .............................. GGCCAGCGACCATCGTGGCCCGGGATCACGGGGACC 1908369 30 100.0 36 .............................. GTAGCTCCAGCACCACCATTACTGCCAGCACTTGCA 1908303 30 100.0 36 .............................. AATCGGTCAGAATGTCGGCCGCCGAAGCCGTGCCGT 1908237 30 100.0 37 .............................. CAAACAGGTCGTCCAGAGGCGTCGGAGCCGGAACCGG 1908170 30 100.0 36 .............................. ACACGAACGACGGGTCCACGTTCAGCGCCCGTCCGG 1908104 30 100.0 36 .............................. GCCCAAATCCTCGGCATTTCTTCACCCTCCTTTCCA 1908038 30 100.0 37 .............................. GGTACAAACTAGAAAAGGTTTCCAGACTTATAATTTC 1907971 30 100.0 38 .............................. GCATTTGCTCCACCTTCTCACAAGCCATCCCTGCTCGT 1907903 30 100.0 38 .............................. TGCGGCTTCTGGGAGGAAGCTACGCCGACTTTCGGGGT 1907835 30 100.0 36 .............................. ATTCCCCCGGCTAGATAGACAACTCTCGGTATAAGG 1907769 30 100.0 37 .............................. AGCGGTATCTTGAGCTTGACGCACAAATTGCAGAACT 1907702 30 100.0 36 .............................. GGATAGGATGCCGCCCGCGTTCAGTACAATAGAACA 1907636 30 100.0 36 .............................. GTAGGCGCACCTTCGTTCTGGCTGCTTTGCGGCGCA 1907570 30 100.0 36 .............................. GAAACAGAAACCGAAACCAGAAACAGAAACCGAAAA 1907504 30 100.0 38 .............................. CTTGATTCTAAGCCTAGCACGTACCACCCCCCGCTGTC 1907436 30 100.0 35 .............................. ACAACAAGCACATCTCTGTGGATAACCCCACAAAA 1907371 30 100.0 35 .............................. CTTGGTATGTGCTTGTGTTTCGCGCCCTGGTGTTT 1907306 30 100.0 37 .............................. CCTTGACCGCCACTTGGTCTCTCTTACCCCAACGATC 1907239 30 100.0 38 .............................. TTGCTGGGCAGCCTACGTAACCCATTCTTCCACCTCCT 1907171 30 100.0 36 .............................. CAGGTCGGTTCACTCTCTCACTCCTTACCCGCCAAC 1907105 30 100.0 36 .............................. ACGTAGGGTCGGGTGCAGATCACGGGCTATGGCGGT 1907039 30 100.0 36 .............................. CTAGCACGATCTGATGGAAGTGGTGCGTGGGTGTCT 1906973 30 100.0 36 .............................. CATCTAAGCATGATCGATTACCTCGATGTTGATAAT 1906907 30 100.0 36 .............................. ACACTCTACCCTGGATGTACTGGGCCTTCTTCCGCC 1906841 30 100.0 35 .............................. CCTCAAATTAATGTTTTCAAAGAACAAGGAACCAA 1906776 30 100.0 36 .............................. GTTCGACAGAGTTTTTGCCGGTTTCGCTGGTTTTTG 1906710 30 100.0 36 .............................. GTGCCCACTTTTGGAGCGTTGCTGGGACTTTAGCTT 1906644 30 100.0 36 .............................. TTGTGCTATGCTTTTAGATTTCCCACGATAAGTAAT 1906578 30 100.0 37 .............................. AATCTTAGACCCCGCTGAATATCCTGAAAACGAATTC 1906511 30 100.0 35 .............................. ATGCTAATGCCTGCGCCTAAAACCCTGCCTATCGT 1906446 30 100.0 35 .............................. TAAATACCGCCGCCGTGCGGTTGGCCGCATAGCCG 1906381 30 100.0 37 .............................. TTTGCAATGGGATACGACTACCGGCGGATATTCGGTC 1906314 30 100.0 35 .............................. GTGCCCAGACTGCTGCCAGCGAGCAGCCAAGCTAG 1906249 30 100.0 36 .............................. GATCCACTAAATGCCATAATGCCGCTGGAGACAACC 1906183 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 91 30 99.8 36 GTTTCCAGCCTACCTACGAGGGATTGAAAC # Left flank : CCGGATTTTAGTCAGGCTGGAGGGATGGGGCACCGGCTTATTCCAGGGAATGCGACAAAACCGGCGCCAGCTGATCCGATCCTTAACCAGAGCACAGACCTGCCGGTCGCTGAGTCTGTACTGGTGCTTGAGTGCTGTCATACGCAAATAGGTTTCCGCCGGTACGGACGGTCGCCCCAAACACCGATGGTACTTGTCCTGAAATGGTTCGAAGAAGCGCTCATCGTCCAACCAGGCGTCGAGTTTGGCCAGATCTTCCGGGAGTTCAAGCACCTCCGGCGGCAATATGTAGTCCAAGAATGATACTTGTCGACTTTCTTCCTGTCGGAGGCATAGCATTACTGCTCACCTCCGCAGGAACCGAAGTTTTTATGTTGAACCATGATCAGCATAGGGATTCCCTCCTGGTGTTTGTTTTGGTTTGGTCACCTTAAACAATTCGCCACGGAGACCGGAATCCCTTGATTTATCTAGGTTTTCAAGGATCTTTATGGCTGAGT # Right flank : TCAATTCGATAAGCCGCTGGCGGAACAGCTCTTGAGTTTCCAGCCTACCTAGATTCTGCTGAAAAACTCAGCCATAAAGATCCTTGAAAACCTAGATAGATTCTGCTGAAAAAAGCACTTTGCCGACTACTTCTCGGCAGTTGATCCTTGACAATTTGATCATGGTTTAACGTTCCTGCCTGGGCTTAGATCAACTTAGCGATTCGGTTCAGGTTGTATCCCCAGACGGCCCCGCCCACCCAGCGGCGACATCCGGCCAGTCCGCGGTATAGCGTTCGCTTGAGTCCATATCGCCTTTTCAGCACGCTGATCGTTCCTTCCTGACCGGCTCGCCAGCGTTGCAGCCGCCGAAACCAGGACTGGCGCTCGTGTCCGGTACGACTGTGACTGCGTTTACCTTTATAAGGCAGGCTGATTTTACGTATACCCAGAGCTTGTAAGGCGCTTTCGTTACCGGCATTCCAGAAACCACGATCGGTAGCGGTACCTTCTGGCACCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA //