Array 1 111017-111466 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRDT01000002.1 Acinetobacter baumannii strain AB2828 LV35_contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 111017 30 96.7 30 ............................T. CCAAGTTATTTAAGATGGTTGGTCTTTTAG 111077 30 96.7 30 ............................G. GTTCTTTCATAACGTAGGCTTTAATGCCTG 111137 30 100.0 30 .............................. CGTTTCCGCAAATCTGCGAAATACTCGTTG 111197 30 100.0 30 .............................. TATAGTGGCATCTTCGAGAGTTAAAGGCGG 111257 30 96.7 30 .............................T CAGAATTTTGTTTACAAGTTCTAAGCGGGA 111317 30 96.7 30 .............................G TTTGAACATCTAATAATTGAGCTGTAATAC 111377 30 93.3 30 ............................GC CTCCAATTGATCCAATTGATCAACCTCCAT 111437 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ============================== ================== 8 30 97.1 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGAAAGCATAATGGTATAGATCGTCTCCAGAACANNNNNNNNNNNNNNNNNNNNTAGAAACAAACGTGGGTTACATCTAGTTGCCTGAGGAGGTTCATGGCGGCATACGCCATTTAGAAAAATAAAAGATAGTGAACTAGTACACATAATTCGTTCATGGCGGCATACGCCATTTAGAAAATATGGTGGTTGTTATAAACCGCCTAATGATAGTTCATGGCGGCATACGCCATTTAGAAAATTAGAAGACGTGGACTCCCCCAACCTTTCAAGTTCATGGCGGCATACGCCATTTAGAAATTTGCGCTCTTGCGGTTATTATCAAAGACCTCGTTCATGGCGGCATACGCCATTTAGAAAAGCATGTGCTAAATCAGGGAAAAGAAAAGCCAGTTCATGGCGGCATACGCCATTTAGAAATAATTATAATCGCAATAGCTTCAATACTCCTAGTTCATGGCGGCATACGCCATTTAGAAAAGTGCGTGAACATTATTC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 111560-114170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRDT01000002.1 Acinetobacter baumannii strain AB2828 LV35_contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 111560 30 93.3 30 ............................AA TAAAAGATAGTGAACTAGTACACATAATTC 111620 30 96.7 30 ............................A. ATGGTGGTTGTTATAAACCGCCTAATGATA 111680 30 96.7 30 ............................A. TAGAAGACGTGGACTCCCCCAACCTTTCAA 111740 30 100.0 30 .............................. TGCGCTCTTGCGGTTATTATCAAAGACCTC 111800 30 93.3 30 ............................AG CATGTGCTAAATCAGGGAAAAGAAAAGCCA 111860 30 96.7 30 .............................A ATTATAATCGCAATAGCTTCAATACTCCTA 111920 30 93.3 30 ............................AG TGCGTGAACATTATTCTTTCTGCATCAGCT 111980 30 93.3 30 ............................CG GTACGTTCAACGGTCAGCAGATTTGTGTTA 112040 30 96.7 30 ............................A. TAATAGTAATCGTAGTGGCGGTGTGTCAAT 112100 30 100.0 30 .............................. AACTTGCTTACGGCCAACACCTGTAATCAA 112160 30 93.3 30 ............................AG CCAACTTAATAGTAGAAAGGTAATGCCCTT 112220 30 96.7 30 .............................A CCAAACCAATCAGCAATGGAAAAACCACCG 112280 30 96.7 30 .............................A TAAAACGCGCAAAAAAATATAAGGGACGTA 112340 30 100.0 30 .............................. AAACTGATTTACAAGCTTGATCAGTAGGCC 112400 30 96.7 30 ............................A. CATGAAGCTTATTAAATGACTGACATGGCT 112460 30 93.3 30 ............................AA AGATTCTAGCCCCCTCAATTGAGAAGTTAT 112520 30 96.7 30 .............................A TTTAGAAAGCTTGGAAAATAAAGGTGACTG 112580 30 100.0 31 .............................. TGCCGATGCGTGCAAACATTTGCTCCGCTTC 112641 30 100.0 30 .............................. ATAGATGGCTTTAACTGACTCCCAGCCCAT 112701 30 100.0 31 .............................. ACCAGATAGCAACTCTCTAGGTCAGATAGAC 112762 30 93.3 29 ............................CC AGACTTGATTTTTATCACCATTGAAGATT 112821 30 96.7 30 .............................C GTTGCTACGCGCCACGGCGCACCCATCGTT 112881 30 100.0 30 .............................. GAATCGGCCGCTTTGCGTATAAACACCACC 112941 30 96.7 30 .............................A AAATCACATCAGGGAAGTGAAGGCGAGCTA 113001 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 113061 30 96.7 30 .............................G GAAGTCATGAATGTAGGTGTTGAGGATGGC 113121 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 113181 30 93.3 30 ............................GA CCCATAAATCAAACAAGCCAACATAATTGA 113241 30 100.0 30 .............................. CCTCAACTGACATTTCCAAATAGTAGAGGC 113301 30 93.3 30 ............................AG TAGTTGCACCAGACTCCGCACAATCTAAAA 113361 30 93.3 30 ............................AA GAGAACGAACGAAAGTTCATGGACATGTTG 113421 30 96.7 30 .............................A AATGTGATTATTCAAGATAAGCTAGGCAGT 113481 30 90.0 30 .........A..................GA CCAATGGAGCACGATAACCCCATGGTTTAT 113541 30 96.7 30 .............................A AGTTAATTAAGGGTGTGGCTATGGTTGCAG 113601 30 93.3 29 ............................AA AATCACAAATACATAAATCATTTTTTATC 113660 30 96.7 30 ............................A. AAAGCGCACAACCCATTGATTTGTATTTTT 113720 30 93.3 30 ............................AG CAAATAGATCAACTGGTGCGCCCTGTGAAT 113780 30 93.3 30 ............................GA GATTCAAGTTTCACCGGATGGCACAAGTAA 113840 30 96.7 31 ............................G. AAAAAAGAGCATTTCCAGCAAAAATTGACGA 113901 30 100.0 30 .............................. TAAAGCTAAATGAGGGTTAAACCTAAGAAA 113961 30 90.0 30 .......T....................AA CGTGAACAATTGTTTTAGCTTTGAACATTA 114021 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 114081 30 86.7 30 A......A.........T..........A. TTTGATCTTTACTTATTCTCGCTTCAAACA 114141 30 73.3 0 .......A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 44 30 95.0 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GATGGTTGGTCTTTTAGGTTCATGGCGGCATACGCCATTTAGAAAGAGTTCTTTCATAACGTAGGCTTTAATGCCTGGTTCATGGCGGCATACGCCATTTAGAAAAACGTTTCCGCAAATCTGCGAAATACTCGTTGGTTCATGGCGGCATACGCCATTTAGAAAAATATAGTGGCATCTTCGAGAGTTAAAGGCGGGTTCATGGCGGCATACGCCATTTAGAAAATCAGAATTTTGTTTACAAGTTCTAAGCGGGAGTTCATGGCGGCATACGCCATTTAGAAAAGTTTGAACATCTAATAATTGAGCTGTAATACGTTCATGGCGGCATACGCCATTTAGAAAGCCTCCAATTGATCCAATTGATCAACCTCCATGTTCATGGCGGCATACGCCATTTAGAAAATAAGAAAGCATAATGGTATAGATCGTCTCCAGAACANNNNNNNNNNNNNNNNNNNNTAGAAACAAACGTGGGTTACATCTAGTTGCCTGAGGAG # Right flank : TAAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //