Array 1 108593-108074 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNM01000011.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001373 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108592 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 108531 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 108470 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 108409 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 108348 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 108287 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 108226 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 108164 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 108103 29 96.6 0 ............T................ | A [108076] ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCCAGCGGGGATAAACCGTACGAATAAACAGATTTTTGCGATATCTCTG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 797-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNM01000106.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001373 contig00106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 796 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 735 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 674 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 613 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 552 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 491 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 430 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 369 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 308 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 247 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 186 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 125 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GCCTGGAATGGTTTAACGGTGCAATCCAGGATAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26-481 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNM01000126.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001373 contig00126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 87 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 148 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 209 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 270 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 331 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 392 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 453 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCCAACGCCTTTAGCCCATCCAGG # Right flank : GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAGGTGTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-382 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNM01000134.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001373 contig00134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 108 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 169 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 230 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 291 29 100.0 33 ............................. ACTTGCTTCATTGTACATGCCTGCCACTGCTCC 353 29 100.0 0 ............................. | C [358] ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCCGAACGCTCAACGGGGAGTGATCGAGAATCTG # Right flank : GCGCGCCATTGCTGAGGGTAAACCGGCGATTAGTGTTCCCGCGCCAGCGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 587-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNM01000006.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001373 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 586 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 525 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 464 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 403 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 342 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 281 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 220 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 159 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 98 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 37 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GCTACCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25-725 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNM01000070.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001373 contig00070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 86 29 100.0 33 ............................. TATGAGTTTTCAACATCACCAACTACGTCATGT 148 29 100.0 33 ............................. GCCAAACAGGTTGAGATAGGGCCTTCATTATGA 210 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 271 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 332 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 393 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 454 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 515 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 576 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 637 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 698 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGTTTGTCTCAACCATGACCAGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //