Array 1 325500-326904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCC010000007.1 Pseudomonas aeruginosa strain 185385 18-5385_ctg_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 325500 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 325560 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 325620 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 325680 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 325740 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 325800 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 325860 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 325920 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 325980 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 326041 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 326101 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 326161 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 326221 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 326281 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 326341 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 326401 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 326457 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 326517 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 326577 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 326637 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 326697 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 326757 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 326817 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 326877 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1694-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCC010000015.1 Pseudomonas aeruginosa strain 185385 18-5385_ctg_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1693 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 1633 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 1573 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 1513 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1453 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1393 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1333 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1273 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1213 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1153 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1093 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1033 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 973 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 913 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 853 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 793 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 733 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 672 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 612 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 552 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 492 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 432 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 372 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 312 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 252 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 192 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 132 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62995-62067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCC010000014.1 Pseudomonas aeruginosa strain 185385 18-5385_ctg_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62994 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 62934 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 62874 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 62814 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 62754 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 62694 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 62634 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 62574 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 62514 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 62454 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62394 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62334 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 62274 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62214 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62154 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62094 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //