Array 1 1150802-1150115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072117.1 Cohnella sp. LGH chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1150801 33 100.0 32 ................................. TCCACAGCACATGGAGATCTATGAGTCTAAAA 1150736 33 100.0 33 ................................. CGTTATAGGAGGTAAATTAAATGACTCAATTAG 1150670 33 100.0 33 ................................. CTTAGAATCGACCACCTGTCATGATTTTTTATA 1150604 33 100.0 32 ................................. GCGAAAAATAAGGCAGCTAATCTGCTAGCAAA 1150539 33 100.0 32 ................................. TCGTGACTGACTTGGGAGTTAGGATCAATTAA 1150474 33 100.0 32 ................................. TCGTGACTGACTTGGGAGTTAGGATCAATTAA 1150409 33 100.0 33 ................................. CCAGCCCCATGATCGTTCCCGCATACAGCCCAT 1150343 33 97.0 32 ................................C CTCCCAGGGCGACCGCAGCCGCCTCTATTGAG 1150278 33 97.0 32 ................................T GGCGGCAATGTGGCGGCTGAAACAATCACCTT 1150213 33 87.9 34 ..........C.AT..................T TGCCGCTCCTGTCAGAATACCAGAGCCCTCCCCA 1150146 32 69.7 0 ....T.....C...AAC...A..A.C-.....G | ========== ====== ====== ====== ================================= ================================== ================== 11 33 95.6 33 GTCGCATCCCTCGCGGATGCGTGGATTGAAATA # Left flank : CCGTTAGAGGTGCAGTTGGTGGAGATTTTGGAGTTGTAAGGGTCTGACGGACCGTTAGAGGTGCAGTCGGTGCAGTTGGTGGAGATTTTGGAGTTGTAAGGGTCTGACGGACCGTTAGAGGTGCAGTTGGTGGAGATTTTGGAGTTGTAAGGGTCTGACGGACCGTTAGAGGTGCAGTTGGTGGAGATTTTGGAGTTGTAAGGGTCTGACGGACCGTTAGAGGTAGAGTAGGCGTAGTTTTTGGAGTTGTAAGGGTCTGGTGAACCTTTAGAAATAAATTGGTAGGGATGAATCCAAACGGTCCTTAGATTATTGTTAGTGCGAATTATGGTGCGAATGTGAGGCTTACATGATTTTCCGGGGGGATTCGCACCAGAAAAAGGCGAAATCCCTTGGTGGAAATTTACATTCTGAGTGTGTTAGGCTTGGATTAGATTGTATTTTTGCGTATTTTGGGTACAAAACGGGTGGTTTCTACGTTTGTAAGTCTCAAAATCGCT # Right flank : CGTCTGCATCATCGCCAGGAAAACAAAAAAATCCCGAAGCCATCGGTTCTGATGACCTCGGGATTTTTTTTATCTTCTGACAGTTATCACTCGCAAGCGACTCCGTCGCCGTCCCTGTCCAGCTTGAGGGAGTAGCCGGGATCTCCTTTGCGAAGAGGCGATTTACCGGCTTTGCGTACTTCGGCACAGCTTGAGTAGACGACGGGTTCCTTTGCGGGAGACGATTTGGCGGGAGGGTTCGCTGTTGCGGGGCTAGGCTGATCCGGGAACAGCTTTTTCGGCTTTTCGACGATGAACAAAACCTTCGTGCCGTCCTCATAGCCCGATAGTTGATGCCCAACCCAGCTTCCCGCGCCGCGATTGTCGCGAGATTCCACGTAGGCGACGCTGGCGCCTTTGCCGCCCTCTTGGCACATAGCCATCGGCCACTCGTCCCGATCGTATCCTTTGCGTGTATCGATGCCGGCCAGCGATTGCTTGCGGTTGTCCTCCGCGCCGCC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2137658-2139455 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072117.1 Cohnella sp. LGH chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2137658 32 93.8 34 ..........T......G.............. CTTGGTTATGTCGAGAACCGTGTGCTAGAGCGGA 2137724 32 93.8 33 ..........T......G.............. GCCCGAGCGAACTCTTCCGTCAGATAAAGCTCG 2137789 32 93.8 33 ..........T......G.............. TCGTCCGGCCGGAAGATTGCAACCCTACGCTGC 2137854 32 93.8 33 ..........T......G.............. ATGATCCGCAAAGAGCGCTAGAGCCGATCGAAT 2137919 32 93.8 33 ..........T......G.............. GCGCTTGGTTATCCTGGATGGACCGTGCGTAAG 2137984 32 93.8 32 ..........T......G.............. ATTGCGGGAATTAAGCAATACACTCTCACTGA 2138048 32 93.8 34 ..........T......G.............. TGCGAAGCGCTCCCCCCCCCAATGCGGGCGACAG 2138114 32 93.8 33 ..........T......G.............. GCTCGTATAGATGCCGTATTGATCCTTACGCTG 2138179 32 93.8 33 ..........T......G.............. CTGACTTGATTTCGTTTGCTAGTTGAGTCATAT 2138244 32 93.8 34 ..........T......G.............. CATCGATTGTTGCTGCATCATCGCCTGTTGTTGT 2138310 32 93.8 33 ..........T......G.............. GGCATGGATAATGCCGCCGGCGCGACGCGCCGT 2138375 32 93.8 34 ..........T......G.............. ATACTTTTTACAGCAAACTCGACATTGTTAACAA 2138441 32 100.0 33 ................................ ATGGCCGTCGACTACGATGCACCGACTAGTGAT 2138506 32 100.0 34 ................................ AATCACTTGGAGGTAAAGCATGAGCTTACTTAAA 2138572 32 100.0 33 ................................ TCAACAACGTGATTGACGGTAAGAATGCCGAGA 2138637 32 100.0 33 ................................ TCCTCTACGGCTATTAATGCTTCTCTGTACCAC 2138702 32 100.0 33 ................................ ATGCGGTTATACATGAGTTCCGAGTCCATGAGC 2138767 32 100.0 33 ................................ GTTTGTCTACCGGCTGCGCGATGTGTGTCAATC 2138832 32 100.0 34 ................................ GTCGCGGAGATCCGTGCCGAAGTGGAGCGTGCGG 2138898 32 100.0 33 ................................ GTCCGTCAGGTCCATGCTGCTTACGTCCACATT 2138963 32 100.0 34 ................................ TCGAGACGCTCCGGACGAAGCGCCTTATCGGTAC 2139029 32 100.0 33 ................................ GTCACTGTACACGTTAATACTTGAAGTTAGGCT 2139094 32 100.0 33 ................................ TACCAATTTCGACATGCTCAATCCCCCACTCCC 2139159 32 100.0 34 ................................ TGGAATGTCGACGGAAAACCGTGGGTCACAGCTC 2139225 32 100.0 34 ................................ TTTGGTGCTTCCATCTGATTCAATGTCTTAGCAG 2139291 32 93.8 34 A...........G................... TCCTTAAAAAAGAAGGGGATCTTAACCATTTGTG 2139357 32 96.9 35 ............G................... GAGGGGATAAAGTATCTCCCAAACACCCATAAATA 2139424 32 84.4 0 ............G..A....A..AC....... | ========== ====== ====== ====== ================================ =================================== ================== 28 32 96.5 33 GTCACTCCCTATACGGGAGTGTGGATTGAAAC # Left flank : CGGCCATGTTCAAATCTGGCTCGAACCAAAGCCGGAGACGGTAGATTTGATTATTGTGAACGATGCCCAAAAGCTTGTCGGAAGCGATGTCCATCTGCTGTTTAACCGATTCTATACTGCGGATCGTACCCGATCCTCTCAAGGATCGGGATTAGGGCTTTCCATCGCCAAAAGCTTGATGAACAAAATGAACGGCTCTCTGACGGCCAAGCTGGACGGGGAAAAACTAACGATGACCTGCAATTGGAAACGGTAGTTTCATTTTTGCTATTAACCTGTCTAGCTTAAAGTATTGGAGAATATCATCTCCTGATCTATACTGAAAATATCTGGTGCGAACCCTAGGCTCACATGTTTTTCCCGGGAGATTCGCACCTCTTACGACACAAGGGTTTTCGGCATTTCGAGCTAATTTACCACTCGCTTTTCCCCATCAAAAATGCTGAGTCGCACTTTTGGGCTCTAAATCCCTTGCCCAGCAAGGGCTCAGCATGCTCGCT # Right flank : CTACGCCGACATAGTCTCATCTCCTCATTGTCTGGTCACCCGCTATGCTAAAGAGTAACCCCAACTATCGCCCACGATGCCACACACCAAAACAAAGAGCCGACCGACAGGGCGCCCGAAGATCGGGGACTGGCGATCGGCTCTTCTCACTAGTCGGCGGAGACCGTCTCTGGGTCTCCGTACAACCATACTTTAACGGCGACGTCGGGCTTCGGATCGCCTGTGAACTTGGCGCTGAACGACAGCGTCTGTCCGCCGTGACGGACAGTCGGTGCTTCGGCGGAGGCTTCGACGACGTGGAGCAGGTTGCGGTTCGAGTCGTAGACGCGTCCGGTCCGGGTCCCGTCGCATTCCAGATACTGATTCGCGGCGATTTCCGTATCGAACGTCATATAGACGCCGTCGGTGTAGAAAGTGGGCCGCTGCACCGCGGCGTCCTCGTTGCCGTAGGATGGACGTACGCGCATGGTGAAGCGAAGCGGCTGCTCGGCGTACTTGTT # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTATACGGGAGTGTGGATTGAAAC # Alternate repeat : GTCACTCCCTTTACGGGGGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.90,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //