Array 1 245429-246677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZVG010000004.1 Escherichia coli strain 53 Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 245429 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 245490 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 245551 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 245612 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 245673 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 245734 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 245795 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 245856 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 245917 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 245978 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 246039 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 246100 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 246161 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 246222 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 246283 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 246344 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 246405 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 246466 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 246527 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 246588 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 246649 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 272377-273380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZVG010000004.1 Escherichia coli strain 53 Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 272377 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 272438 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 272499 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 272560 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 272621 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 272682 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 272743 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 272804 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 272865 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 272926 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 272987 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 273048 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 273108 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 273169 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 273230 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 273291 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 273352 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //