Array 1 254440-252946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMP010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2407 NODE_2_length_778922_cov_45.0106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254439 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 254378 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 254317 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 254256 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 254195 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 254134 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 254073 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 254012 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 253951 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 253890 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 253829 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 253768 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 253707 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 253646 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 253585 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 253524 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 253463 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 253402 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 253341 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 253280 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 253219 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 253158 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 253097 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 253036 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 252975 29 100.0 0 ............................. | A [252947] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 272009-271004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMP010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2407 NODE_2_length_778922_cov_45.0106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 272008 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 271947 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 271886 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 271825 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 271764 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 271703 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 271642 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 271580 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 271519 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 271458 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 271397 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 271336 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 271275 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 271214 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 271153 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 271092 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 271031 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //