Array 1 258869-260581 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCS01000001.1 Aggregatibacter kilianii strain MELO_83 NODE_1_length_413688_cov_62.4942, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 258869 32 100.0 36 ................................ CGGCGATTGCTCCGAAGATTTGTCATTAGATGATTT 258937 32 100.0 36 ................................ TTATTATTTTATTTGGTATCCGGAACCGCTTTAGCA 259005 32 96.9 34 ..............T................. AAACCCAATTACCACTAATAGGTGATTTTGGTTT 259071 32 100.0 32 ................................ AACAGTTGGCGCTCCACCTCGCTAAAACTCAC 259135 32 100.0 35 ................................ GGATGTCGGCTCCAACACCGGGTGGTTGCGATAAG 259202 32 100.0 37 ................................ ACCAACAATGCTGTCAGAAGACAAAATTTTTGAACGG 259271 32 100.0 36 ................................ ATTAAAGACCGCATAGAAACAACTTTTTTGATGTCC 259339 32 100.0 35 ................................ ACAATAAGAGAGACCCTAGGCAATGCCTAGGGTTT 259406 32 100.0 36 ................................ AAAGGGCATCGGTTTAATGAATCAACGTGGCGACTT 259474 32 100.0 34 ................................ GCGCGGATAAACAAGCACCATTACAGACTTACCT 259540 32 100.0 35 ................................ CAACCATGCCAAAGTCAAAAATAGAACGAATCACG 259607 32 100.0 35 ................................ TAAGCCACGCAAGCGCACCATCATTTCCTGACGGC 259674 32 100.0 34 ................................ TCCCTATATTAGCCCGCTTTAGCGGGCTTTTTTT 259740 32 100.0 35 ................................ AGAATCGGCGAATTGTGCGGCAGAATATTTATGCT 259807 32 100.0 35 ................................ CCCAAGTACGTGATCGGGAAATAATCGTTGTTTAT 259874 32 100.0 38 ................................ GACTATGACCGCGTCCGAACAGCTCGAAGCCATGAAAG 259944 32 100.0 36 ................................ ATTGCTCGCTTAAAATTATCAACGCGCAAAAAATAA 260012 32 100.0 36 ................................ AAGTATTGAAATTATGCCGAACTTTCGCAATAGCGG 260080 32 100.0 34 ................................ GTTCGTCTCGCGGTCTGAACCCGGTGCGGTCAAC 260146 32 100.0 35 ................................ TCATCAATAAGACGTTGTGCATCTGAGAACAAGGG 260213 32 100.0 35 ................................ TAAACAAAAATAGGAGAAACATAATGAATCAAGAA 260280 32 100.0 37 ................................ TGGCCCCCTTTGATTGAATTGCATTAAGTAGCTCCAA 260349 32 100.0 36 ................................ AAGTATTGAAATTATGCCGAACTTTCGCAATAGCGG 260417 32 100.0 34 ................................ GTTCGTCTCGCGGTCTGAACCCGGTGCGGTCAAC 260483 32 100.0 35 ................................ TCATCAATAAGACGTTGTGCATCTGAGAACAAGGG 260550 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 26 32 99.9 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCATATCGCAAAACATTGCTTAGATTACGGCGTACGCGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTCATGTTGAAAAACAAACTGTTGGAGACCTACGACCCTACATGTGACAGCCTGCGTTTTTACCATTTAGGCAGTAAGTGGCGCAATAAAGTGGAGCATCATGGGGCAAAAGGGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGCTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATAAGTTAATTTATTTGTATAACGGCGGTATGGCCGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTAGCTAGGGA # Right flank : CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTTGAAACTCATCAATAAGACGTTGTGCATCTGAGAACAAGGGGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACGCGCCGTGCTCAATCTTGGCAGTGCAGACAAAGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACGGGTGTAACAGAACGCCCCGAACTTCTTCGAGCGGCAGCCGCCTTCGGGTGGCTGTGTGTTGAAACGCCAAAGGTGACCGTGGCAAGGCACATGAAATCGCGCAGCCGCCTTCGGGTGGCTGTGTGTTGAAACCAGTATTTAAGTTAAGGTGTTTAAATTTTATAAACCAGCCGTCTCCGCGCGGCTGTGTGTTGAAACAGGGTACCACACCACCCCGCCGTGCCAGCCTTTATGCAGCCGCCTTCGAGCGGCTGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 260727-261154 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCS01000001.1 Aggregatibacter kilianii strain MELO_83 NODE_1_length_413688_cov_62.4942, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 260727 32 100.0 32 ................................ GCGCCGTGCTCAATCTTGGCAGTGCAGACAAA 260791 32 100.0 34 ................................ GGGTGTAACAGAACGCCCCGAACTTCTTCGAGCG 260857 32 90.6 35 ..........T..G.T................ GCCAAAGGTGACCGTGGCAAGGCACATGAAATCGC 260924 32 90.6 34 ..........T..G.T................ CAGTATTTAAGTTAAGGTGTTTAAATTTTATAAA 260990 32 93.8 35 C......T........................ AGGGTACCACACCACCCCGCCGTGCCAGCCTTTAT 261057 32 93.8 34 ..........T..A.................. TCAAAGTAGATCACAAAGGTGGTGAGCATACCGC 261123 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 95.1 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : GCGGCTGTGTGTTGAAACTAAACAAAAATAGGAGAAACATAATGAATCAAGAAGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACTGGCCCCCTTTGATTGAATTGCATTAAGTAGCTCCAAGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACAAGTATTGAAATTATGCCGAACTTTCGCAATAGCGGGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACGTTCGTCTCGCGGTCTGAACCCGGTGCGGTCAACGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACTCATCAATAAGACGTTGTGCATCTGAGAACAAGGGGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTTGAAACTCATCAATAAGACGTTGTGCATCTGAGAACAAGGG # Right flank : CTAACGCTTATATATCAATAAGATCAAGTAAGATCGCAGCCACCTTTGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATGTATAAGTTTCAAGCTTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACCGCTCTTTTTATTTATCTACGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTCAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCAGTGCCTTTGACGATAAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCGCCCACTAATTCAGGATTATGCACAGTGATACGTAAACGGGTCATACAAGCATCTACCTCGGCAATATTGTTTCGTCCGCCAAGAAGATTGATGATTTGTACCACTTGCGCA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : GCAGCCGCCTTCGGGTGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //