Array 1 2565-2297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRUQ010000033.1 Vibrio metschnikovii strain M28D Scaffold32_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2564 28 96.4 32 ...........................T TTGTTCTTTAATCAGATCAGCATTCAATTTGT 2504 28 96.4 32 ...........................T AATAGATGTAAAGCGCGTCCTAGTGATGTGTC 2444 28 100.0 32 ............................ AGAAGGTGGGTTGCCTTTTGATGATTCAACGG 2384 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 2325 28 89.3 0 ...T.......T.T.............. | A [2301] ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCAGAGGGATTGGGGAGACTTTAAAATTTCGAAGCATCCAGATATCCATAAAGGTTTATTGGACTCTGAATACTACGTTTCTAAAGAGCTGTACGACAAGTTTAGAAATATTATCGTCGAGTTGAAGCGGCTTGAAGGTGAACTAAGTGCTTCAAAACGCTCAGACAAAGCTGAGAATTTGCTGAAACTCATAGAAGCGGTCAAGCTAGATGCTCGTCTTGACGAATAAATACATAACAAACAATTCAAGCAGACCCTCAACGCGTGGCATTTTCGTTTTGCGTTGAGTTTGGTGATTACGGCGTTGTGCGGAAAGTTGGTAGTAGCGTTTCGGGCTACTTAATTGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : TTGGTGATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAAGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGACAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCCTTTCAAATAAAAAGGAACTTTCGATGTTTAAAATCGAGACTAAACGTCTGATTATTAGGGATATGACTCCGAACGATGAAGATGCTTTTGTTGCTATGTCTCAGGATGCCAAATATCAGCGTTTCTATGAAGAAAGCGATTGTGATCCTAATAAATACCGAGAGTTAACAAGCTTGTTTATCACTCAGGCTTTTGAGAAGCCAAGAAAATCATACCAATTAGCTGTCGAGTGTAAAGTGTCAGGTAAGTTCGTTGGGACTGTTTGTTTACGTCTAGAGGACAATCGACAGGCTTCGATGGGGTGTGCATTTTCCAGAATCTCTCAAGGTAATAAGTTAAGTCAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 290-558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRUQ010000036.1 Vibrio metschnikovii strain M28D Scaffold35_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 290 28 100.0 33 ............................ AGCGGTATAAGCTGGCTGACCGTCCTGAATCTT 351 28 100.0 32 ............................ AAAGCTACTTGTTTGAAGTGGCCGCCCCAGAA 411 28 100.0 32 ............................ TTAGTTGATCAGGCCGCGGGTATCTTCGGTAG 471 28 100.0 32 ............................ TACCACACTAACTCTTGTAGAGTGCGCTGAAA 531 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGCGAGAGCGAGTAAAGCGTTACATTCTGCCAGAACGAAAAAAACGGCCCAAATCCAGGACCGTTCGTATGAGTAAAACTCGCTACCCTGTTCGCTCCAAACACGTTAAGTGATAGGAGTTAGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATAG # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGCAGCATTTTTGTAATGCGTTGATTTTTGTGTTTTACGGTGTTGTGCGGTGAGTTGGTCGTTGCGTTGCTCACCCCTTAAGCGGGCGTTAGCCGACTTCTACCACCTTACTCATCAGTAAGTGTATACTTAGCCAAGTTTTACTTACATTGAAGAAGATCACCATGACAGCATTGACAGATAACATGTGGAATATGAAACCAAATATACCGTTGGCTAAACAACTTGCCAAAAGAGATGTACCAGCTTTGGTTTATGACGCTGTTAACCTCGAGGGTGTTGCAATGACTTTACCTGAGGTGCAAACCATTCTTGATGGGATCACCGTAGGTGGTCATCGAATTAGTGATCAAAATATGGCAATGAACCAAGCTAGAGCATGGGAGTTTATTTTTGGCTTAGTTGATCAAGGTGAGTTCCAATTTAATAAAGAAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 175640-174892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRUQ010000003.1 Vibrio metschnikovii strain M28D Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 175639 28 100.0 32 ............................ GCGGGACATTCTTGGCTTGATGGGCCTCTGGC 175579 28 100.0 32 ............................ TTTCATAAAGACCTGCATAAAATTATTAAGCT 175519 28 100.0 32 ............................ ATGTAAAATAATTGGAATGTAGGCCAGTAAAG 175459 28 100.0 32 ............................ TTGCATCGCCCCCTCCCAACCGTAGTGAGCTA 175399 28 100.0 32 ............................ TTACACTATAAAACTTGGAACTGCTGGCTTTT 175339 28 100.0 32 ............................ TAAAGCTACTTGTTTGAGAGGCCGCCCCAGAA 175279 28 100.0 32 ............................ AGTCCCCCAGTTGATATAACGCGGAACAGATT 175219 28 100.0 32 ............................ GACAATAAAAGTTACCAAAGCTTGAGTAATAA 175159 28 100.0 32 ............................ TTCGATGGTTATCTTTTCGTCAAGCATTTTCC 175099 28 100.0 32 ............................ AAACATTAATTCATTAAGCATCATATTTAAAT 175039 28 100.0 32 ............................ AAAACCTGAAAATCATGTATTGGCTTTTTCTT 174979 28 100.0 32 ............................ CATCGGCATAACTTCTACGGATGAATCTAGGA 174919 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTTTTGCATGATTTACAAGGTTTAAACTGGCTTGGTCCGTTATCTGGTTACTGCCAAGTGAGTGAGATATTGGCTATTCCTGAACAGGTGCAATATCGAGTGATCTCAGTAAAGCGTAGCAATTTAAGTCAAGCGAAGCTCAGACGTTTGATCGCTCGCGGTAGCATCGATAAAGAAGGTGAAAAACGTTACAAAGTGAAAATGCTTAGCCAAGGTTTTGATAATCCGTACCTAGATTTATTCAGCAGTTCGACGAAGCAGGTACATCGTAAATTTTTTGAGTTTGGTGAAATACAGCCACTGCCAGTATCCGGAAAGTTTGATTCCTATGGGCTAAGTCATACCACTACGGTTCCTTGGTTTTAACCCTATTTTTTTGCTCTTTAAAAATAATCTTTAAATACAAATAGTTACATCGGGTGATTTAAAATAGGGTAAAAATACATTTTTTGCTCTAACTGCTTGTTGTAACTTATTTTTATGTTGTTATTCTATA # Right flank : CGCCGGATTCGATGGAATCAAACTCCCGCCAGTCATCCCCGCGAAGGCGGGGATCCATTCTGCAACAGATGCCAAGTGCTTAAGTGAGCGATCAATTGGCCACAGATTACTGATACTTCGCATAGATTCCCGCCTACGCGGGAATGACGGTTTGGTTGTGGTTTTGGGAGCTGATCTCTATAGATCCCCGTCATGTTTTGCCTGCTACTGCTGTGAGGCAGGGAAATGAAGGCGTAGCGATCATCGAAAACTGATCCACTAAATACACTTAGTCAGCATAGATTCCCACCTTGAGGGCAATGATGCTTGACGCTTTGAATACTCGATTGTTCACCTTGATTACAAGAAAGCGTGAGTTGTTTAACAATATGTGCGCCTAATTCCTTAGACACTACGTTGTATGATTGATGTGAGTGGTGGAATACATGAGCTCCCTAACGTTACCTTGCCAGCGAGAGATTGATCTCTCATCAGAGTTAAACGTCGTATTACAAGACAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 661-273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRUQ010000053.1 Vibrio metschnikovii strain M28D Scaffold52_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 660 28 100.0 32 ............................ TTGAGCTGCAAATAACTCATTAGGCTCAAGCA 600 28 100.0 32 ............................ TCTCTAAATTGAATCGAACATCCCGCCTCGTA 540 28 100.0 32 ............................ AACCAAAGGTGCCGGCGCTACTTTTTGGCGCT 480 28 100.0 32 ............................ ATATCTAGCTAGAATATTACTTGATAAATAAT 420 28 100.0 32 ............................ ATTCTGAGATTTGATCGCACGTTTTGGCAATC 360 28 100.0 32 ............................ TCAGCGGGGACGGCTCTTTCTCCATAGTTGTC 300 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCCGCACAGGCAGCTTAGAAATGTAACAATTGAGCAAACAAAAGCTAAGATAAGTTCACTGCCGCACAGGCAGCTTAGAAATTAAAATGATCTCCATGCTATCAGTAGACCAAGTTCACTGCCGCACAGGCAGCTTAGAAACAAACTCGCTCTAATCCAAATCAAGCAACCAGTTTACTGCCGTATAGGCAGCTTAAGAAATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATT # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATGTACTCATATGTATTGGAGTTTGAGTGGAAATAGAATTTTATGAAGCAACTGAAATCGAATTAGCTTCAGAGTTAACACGACTAAATATGCACACGTATTATTTGGCTAGAAATCTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1528-960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRUQ010000053.1 Vibrio metschnikovii strain M28D Scaffold52_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1527 28 100.0 32 ............................ AGTAACGCCCGTGTAGTGCTTGGCAATAAATG 1467 28 100.0 32 ............................ TCACAGTTTTGAAACATAGTTCTGCCGCGTCT 1407 28 100.0 32 ............................ TTCTGATATGTCCACTAATCCCGTTTCTCTTT 1347 28 100.0 32 ............................ ATCAAACCGTGCTGCTGCTCGTGCGTTGATTG 1287 28 100.0 32 ............................ ATACTCCTTCCTCTTTTCTGTTTGCCTGTTAT 1227 28 100.0 32 ............................ ATTAGCTCTCTGATTTCATCATCAAGTGATGA 1167 28 100.0 32 ............................ TGTAACAATTGAGCAAACAAAAGCTAAGATAA 1107 28 100.0 32 ............................ TTAAAATGATCTCCATGCTATCAGTAGACCAA 1047 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 988 28 89.3 0 ...T.......T.T.............. | A [964] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTCCGGCTTTGCTCTGATAAATTGTGTTCGTAAAAGGTTCGATTGTTGCTGAAAGGTCTCTTCCTTTGGTGTTGTTGACCCCTTGATTCCGTAAGCTAATTCGCTTCAACCTATTTGGGATCTTATCGGCAACAATACTTGCTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAAGTATTCGTAAGCAATAAATGTTGAAAAAGTTCAATTTAATCAATAAGTAATAAAGCATAACAAACGCTTCAAGAGGGACTTCCAACGCGTGGCATTTTTATTATGCGTTGATTCCGGTGGTTTCAGTGTTATGCGGAGGCTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATTGTTCACTGCCGCATAGGCAGCTTAGAAATTGAGCTGCAAATAACTCATTAGGCTCAAGCAGTTCACTGCCGCATAGGCAGCTTAGAAATCTCTAAATTGAATCGAACATCCCGCCTCGTAGTTCACTGCCGCATAGGCAGCTTAGAAAAACCAAAGGTGCCGGCGCTACTTTTTGGCGCTGTTCACTGCCGCATAGGCAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //