Array 1 21247-25663 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUF01000009.1 Pyrobaculum aerophilum strain YKB32 NODE_9_length_64464_cov_21.1695_ID_2870, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 21247 24 100.0 51 ........................ TATTGTACTGTAGATGTAGACATTAAGCAAATAAACGCAGTGAGAAAAAAA 21322 24 100.0 43 ........................ CTTATTACATTGCACGTGCCGGAGGAGTGGCTACAGATAATGG 21389 24 100.0 39 ........................ CCGCGCTCGCGCGGCCGTTATGAGGAAGAATATCCTGAC 21452 24 100.0 49 ........................ CTAACGTAAGCGATAAACGGTAGCCTCGTCGCCTCTTCAAGCTTTGCCG 21525 24 100.0 43 ........................ TGTACCAGCAACAGCCGCCCAGCTCTACGTACATCCCCTCCTC 21592 24 100.0 42 ........................ GCGTCTCTTATCGCGAGGTTTTCCAACTTTCGCGAATTTAGA 21658 24 100.0 40 ........................ TCACTAATCCGCTTAACAGCGTCACTAAAGAAGGAAATAA 21722 24 100.0 42 ........................ GAATCTGCCTAAGGGGGCAGTGCCGCTCATAATGTTCTATGT 21788 24 95.8 39 A....................... CTTAGATTACTTATTTGAACCTGTCAAGAGAGAAATAGC 21851 24 100.0 43 ........................ TTTTTGCGTGTATATCACAAGGCGCCACTGAGTGCTTTTATTC 21918 24 100.0 43 ........................ TTTACATATGTCGAAACTGATATGCGACTAGTGGACTGGATGC 21985 24 100.0 45 ........................ CCGAGAGAATTGCGGTTTTTCCACAGGTTCTCAAATCGTCTCTCC 22054 24 100.0 44 ........................ TTGCGTACTAGTGCCGCAGTGATGAACGCGAACGCCCACACGGG 22122 24 100.0 48 ........................ GTCTGTACAACGTGTCGTGTGTGCCACCACGCCTCTCGAAGGCGTCTA 22194 24 100.0 44 ........................ TGATTATTTATTTCTCCCTGTTCTTGTCGGAGAAAAACTTAAAT 22262 24 100.0 44 ........................ ATGGCGCAGGTTTTCAAGGCGCATCACGGCCCGAGCTTGACCTC 22330 24 100.0 41 ........................ AATCGATTTGCTGAAGTGCGGCCTGCCATCTCCCCTCTTGT 22395 24 100.0 43 ........................ ACATATTCATCTAATAGTTTTCGACTGTAAGTCGTGCTTATCA 22462 24 100.0 39 ........................ TACGATTCGAATATGAGGGCGTGGTACAGCGTTGTTGAT 22525 24 100.0 45 ........................ ATGTGAAACGCCTGCGGCTTCTCTGCCGATATCTGCACCGCGTTG 22594 24 100.0 47 ........................ AAGCCTAACAGATGCAACACGCCACGAATAAAACCATATGCGTGAAT 22665 24 100.0 49 ........................ ATCAATGTACATAAACCCGTTGTGGGGCACCAGGGCGTTCAACAGGACC 22738 24 100.0 47 ........................ CACTGCGGCTCTGTGCGCGTGTACCGCGCCGATGGCGAATACGTATG 22809 24 100.0 44 ........................ ATAAAATCTCCCAGGTTTATAACGGTTTTGTTCGCCAAACTCAG 22877 24 100.0 44 ........................ ACCCCCTCCCCCGAGGGGATGGTTCACGGCGGGGGTTCACAGGG 22945 24 100.0 46 ........................ GTATAAACTTGTGTGAAAAATACACTAAGGAAATGGCCGAATGTGT 23015 24 100.0 43 ........................ TGAAAGGGAGTACCGGGTATGGCCATACACACTCACCTCCAAG 23082 24 100.0 46 ........................ GGTGATGTGGCCCTAGTGTTCAGGCTGACTGGGAGGCCCCAGGGTG 23152 24 100.0 48 ........................ TATATCAGCACTTGTTGCGGAACTCTTACTTCAGCGATATAGTTGTCG 23224 24 100.0 45 ........................ TTTTGTTTCTACGCGTTTGATTATATCGAATCTCCTTATTCCTTT 23293 24 100.0 39 ........................ CGCAGTTATTACCCAGCAGAGCGCTGTTTTAAGCTTTTC 23356 24 100.0 44 ........................ CTTGTACATCCATCTTACATCTACACGCAAGGGCAAATCGAAAA 23424 24 100.0 46 ........................ GCCAAGCGGTGCCCGCTACGCGCTATATATGCAGTGCAACGCCCGG 23494 24 100.0 45 ........................ TGTCCAGCTCCACCTCCACCTTCCTCCCCGTGGTTATGTCAACTC 23563 24 100.0 44 ........................ GAATTAGATGTGCGCGAGCGGTTGTGGGTATGCACAAGCAGATA 23631 24 100.0 43 ........................ CCGCACAAAGCGCCAGTCACTTGTCCTGCAATTGAGGGCACGA 23698 24 100.0 40 ........................ CTAACGCATGTGTTAACGTCCAATACGGAGATCAAATAAA 23762 24 100.0 45 ........................ AATTACATAGCCGACGTAGCCCCAAACTCCGGGTCCCAGCGGCTG 23831 24 100.0 43 ........................ ATATTCGTTGACGAATTGGCGTGGAGGTTAGGCGTATATGATG 23898 24 100.0 44 ........................ GTTGTGGTACAACAATGGCCAATATGCATACTTTTCAGCGTATT 23966 24 100.0 46 ........................ GGTCTGGCCAGGTACGTGGAGGAGGAGCACCTCTCCGTACCCTTTA 24036 24 100.0 46 ........................ AGTCGCAATTTTCTTCAGCACATACCGCTCAAACACGGAGTCCTTT 24106 24 100.0 47 ........................ TGAAATACCTGACTTAGACAGCACTTACAATATCTTAGTCTTAGCGA 24177 24 100.0 46 ........................ GTTCAACTCTTCTTAATGTATCCTCAACTTCTTTCCATTCCTTTAT 24247 24 100.0 38 ........................ CCCCCAGCCTGCGCCCGGTGGCGCCCAGTAGCCGTGTT 24309 24 100.0 46 ........................ AGATTTTGGCAGAGGGATCGAACTTGGCGCCAGCCTTCTTCAATAG 24379 24 100.0 46 ........................ CTGATCCGTGTAGCGTGGCAGGCAAGCTGATAACGTTAGCGAGACC 24449 24 100.0 42 ........................ GCCTTTACCCCGGCCTCGATCACGTAGCGTCTCACGAGAGAG 24515 24 100.0 41 ........................ TTGCGTCAAGACTATCAGCGATTTCCCACATGTCCAATACT 24580 24 100.0 45 ........................ GGCAGGCAGGGCTATGCCGAAGACCGTCACAGTGCCGCCGGACTG 24649 24 100.0 42 ........................ TTCAATACCGGCCTCAGGTATATTTGGGGCCCCGGGGCCCTT 24715 24 100.0 43 ........................ CAATTCTCTTCTTGCGGTCTCTCTCTAGAGTCACGTAGAGACG 24782 24 100.0 42 ........................ AAGGCCCCTCTGCAATTTCGCAGTCCCCGACACATCCAAATG 24848 24 100.0 47 ........................ CATATTTGTCTGAGGGCATGTTATGTAAATTGGCCACACAGTCCTCC 24919 24 100.0 46 ........................ TTTTCTGTCAAATAGCGCGAAAGCCACACTCTTAAATCCTCATTTA 24989 24 100.0 41 ........................ ACGGCTCTTACCACGACCTCCCTAAGCTGATTTATCGCATT 25054 24 100.0 36 ........................ TATAACAACAGCCTCGCGGCCACTAGGTTAGAGGCT 25114 24 100.0 42 ........................ TCTCTCCAGCAACGCTCTTATAAACGAGACGCCCGGTGGCGT 25180 24 100.0 44 ........................ TTCACATAAAGTTGCGTCTAAACATGCTAGACAGTTAGTTTCAT 25248 24 100.0 45 ........................ AGAAGGGGAGGAGAGTGGCAGAGCTACTACTCAAGCTAATTGAGT 25317 24 100.0 38 ........................ GCCACCTCGGTGACGCTCTCGAGGAGATCTACCAACTC 25379 24 100.0 37 ........................ AATCTAGGTCCATCAAGGGCCCTTTGGCCCAAATTTT 25440 24 100.0 43 ........................ ACAGTTCTTATCCACGTATCCGTTTCAATCACACTATCTTGTT 25507 24 100.0 43 ........................ CGCGTAGTAAGGCGGCGACCACGAGGTCTCGCGCATCGACTGC 25574 24 100.0 42 ........................ ATCCAGAACACCAATTGCTTGACCCGCGATATAATGATGAGC 25640 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================================== ================== 66 24 99.9 44 GAATCTCAAAAAGAGGATTGAAAG # Left flank : CGGCGAATAGGGGGGAAACGGCAAAGGGCTTGGGCTTGGCGTCGTGAAGCCATCCCCCCACTCTAGACACCACAAGAGACTCCACCAGAGTGCCGGAAAACCCAGTCAACACCACTCCCCCGGCCAGCCTGCCCAGAACTCTAACTCTCCACACAGCCCGCACAACGCCCCCATATTAAACTACCCCTCTATATACTCTATATATTTTTTGGCGTTTAAAAATCGTCGTACGCAATTCTCTTTACAAATTCCCATATTTCAACTGTCTTTCCGAGTTAAAAATTGTAAAGAGGGTATCCAATTTATAAAACGTCGTACAACAACTCGGCGCACCCCGGCGCCGAGAGGCAAAAAACGGCGTTCAACTACCGGGAATAGAGTCAATCTCCAGAATAACAGCCACAAACCCCTAAAAACGACACAAGAAAAAACCGCCTCCAAAGACAAAACAAAAGGAGAAAAACTTAAAAACCCCCAAAAACACAAATCCAGAAACCCCA # Right flank : GTTAGAAATAAGCTACGGGAAACAAAGCTCAATGAGTTTGTCTAGCCGATTTTGGATTGTTGGCTTAGATTTTTTCTACGTGGGGAGATGTGAAGCCGCAGTATTTACGGTACCAACAACTGGAGCATTTGGCCGGGTGGTAGGCGGGTGTGGGGGTCCAGCCGTTTTGTATTTTCCTTATCTGCTGGGCCGTATGTTTTACTAGCTCTACGAGGTCGCGGGTCAGGGCTATGTATTTGACCTCTCCTGTCTCCGTGTAGTATATATAGGCCGAGGCGACGGCTTTGCCGTAGTGGTGTTGGGCGGCGACTGCGTAGGCCGCGGCTTGTGCCTTGTGGTGGACGGGAATTTTCCTGGGGGGCTTGGCCAGTTTTACCTCTAGGGGGGCGGGCCTTCCTCTCAGCCACAGCACTGCGTCTACTACTCCGCACAAGCCTCCTCCCTCTAGGCGGGGGCTGTGTTCTATTTTCTCGGCGCCTAGGGCCTTTGCCACCGCCTCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 68423-69068 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUF01000001.1 Pyrobaculum aerophilum strain YKB32 NODE_1_length_159596_cov_20.5428_ID_2854, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================= ================== 68423 25 100.0 42 ......................... TGTCGTAGTTGAGTCGTTGCGGTTGCGCAACATGTTGTCCAG 68490 25 100.0 44 ......................... CTTACTGCTACTCCTTCTTGAAACCGCGTCAATAAGTTCCTTTG 68559 25 100.0 44 ......................... AGAGAGATTAAGCGCATATCTATTTCTATGCTAAAGATAAAAAA 68628 25 100.0 43 ......................... ACTATTGATATTTCACTACCTCCGTCCGCCATGTCCGCGATAT 68696 25 100.0 45 ......................... AGGACGGGACTAATGTCCTAGGACAGTCAGCTAATCCAATATCAA 68766 25 100.0 40 ......................... ACTCTGGCAAGAAGAGCCGTCTCGTATCTGGGTCTTCTAG 68831 25 96.0 40 ................T........ TAATGAGCTCTGCTACACCATCACCTGAGTATTAATATCG 68896 25 100.0 41 ......................... TTGATGAGTGGCGGATAGTCGAACGCAATCAGAGAACGCAA 68962 25 92.0 57 .....T....G.............. GTCTCGCAGTGAAACCTCTCTCGTGGGCTCTAAGTAGACGTAGTACGTCCTGCCGAT 69044 25 88.0 0 T.........C...T.......... | ========== ====== ====== ====== ========================= ========================================================= ================== 10 25 97.6 44 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : CTACACCTCTCCGCCACGTACTTCGCCATTGCCAGCGCCTTTGCCACTGCATAAGCCGCCGCCCTCACGTCCACTGGCTTTGGCAACAGCCTTTTCAACCTCACCGCAATTGAAAGGGGATTTGCGAGATTGCCGAGGAAGAGAGTGTCCCGCGCCCGCCAGCTGAGCTTTAGGTAAAGGCGACGGCCTAACAGCCACATGTAACCCCTAACGCCCCTTATCTCAACCGGGCCTATGTAGAGGTACATGCCCCTCTCCTCCTCCACATTTTAAAACATTTGTTTATATGAATGTAAAGCGTTTACGAAATAGCGCGGCGAAGAACGGCGTTGGGCATGCGCTGTTCTTACATAGTGCCATTATCATTACGGCGAAAAACGGCGTACGCCGTCGGCGGATAGGGAAATATATGAATGTAAAGCGAGTGGAAAAAGGCGCTTGCCGCAAGACAAAAAACCAAAGAAAAACTTAAAAACCCAAAAGAACTTTAAACGCAAGCC # Right flank : CAAAATTGAGAGAGTTTAATAGGCTGAACGGCTTGCGGTCGGGAATCGAAAATAGGGTAGATATCCTGCTAACGAGATATATATTGATGTGTTTTCCGACTGTCAATAATCCTCCATAGTGCTGTAAGCGTATTTTATTACGGCGGTTATGCCCATTACCGTCAGGGATCTCTCCTCGCCCTTATTATCCACAGCGAAGATACCTCTTTGTAAAGTGTATAGGCTATAAAGCCCTATGATCTGGGGGTATAATAATACATCTATAACTAAAGCCACCAATAGTCTCCAGTCCAATGCTTTTAAATTCTTGGGATGTATCTTTTATGGCTCTAGATTTTATAAAAGATGAGTTTCGGCGATATTTCTCGGAGTTAGATCTTTTCAGGAAAATTGGCGTATACTTGGCGCTTCTTTCCAGTTATGGGAATTACATGAATGTCTCCCACGACCCAGAGGCTTTGAGCGAGATAAAGAAAAAACTTGAAAATCTCATTAGAAGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 20324-20477 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUF01000034.1 Pyrobaculum aerophilum strain YKB32 NODE_34_length_24816_cov_25.2754_ID_2920, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 20324 25 100.0 39 ......................... ATATCAAATAGCAACTCTTTATTTAGAAATTTGCCTCTG 20388 25 100.0 40 ......................... GGCAGGCGGATAGACTCTAGAAACGGCACCCTTTGGTCAA 20453 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ======================================== ================== 3 25 100.0 40 GAAGAATCTACAAAAGAATTGAAAC # Left flank : CATCACGGAACAAGGGCTTGTGAAAAGACGCCACGGCCAAAAAAGCGGCTGAACGCCGCCTTATTCACAAGACAACAGGCCCTAACGGCTTAGGATAGACACGCCGCACGCGTTCTGGCATATCTACGGCATCCAAAACCAGTCACGCATGCATCCATGCTTTACCTCAGTAAAGCTCCATTCAAGTTAAAAATAGCCTAGACACACCTCTCTGCCAAGATTTCAAACCCTTGGATAAGTTTACAGAATAAATTTCAGTTTTTACGGCCTATTTTTTTAGCCTTTACTATTATAAAATTTGGGACTCGAAGCAAATACCCCTCAGCGTTGTCTTTATCTTTTTCTATTGTGTTTTTGTTAATGTTTATCTCTCTACCCAGTGTTGTGGTAAGTGCGCTGTGGCGCCCCGCCGAGATGCCCCAGCCGCCGTGGAGGAAAACAGACGTGAGACGAAAAATTTATAAAGCGAGAAAAACCAACATCCCGAATAAAAACCCACA # Right flank : CAACATGATAACGGCGAATAAGCTGGGGGTTTAAGCTGGCGTTGAGTAATACGCGGGAGTTGATATAAAAACTGACTGCGCTATTCGGAGTCCGCCAAATGTAAATCTGTGGGTGGTGGTTAGAAGCGGGATCGACCTGGCGGGGCGGGGAGGCCTATAGGCCGGCTTTAAAGGCGCCAGGGGTTTAAGCGGTTAAGGCCCTTTGAGCCGTCCCGCAGGCGCCGTGGGGATGCGGGGGAGGAGCGGGGCGCTGTAGTGTCGGGGAGCGTATATAAGCGGGAAAAACACGGTCTACAAGCTCTAAAGGGTAACGCCTTGGCAGTAGCGCGCGACGTAGATGTCGAGTATGTGCGCTAAGTCGTCGTATTTTGCCAGCTTGCGGTAGAGGTTTTTTATCAAGTCGTCTGTGTCGTAACCCAGTTTTTTATACCTGCACGCTCTTATTAAAGTCGCCAATTTGTCTGCAAACGAGACAATCCTGCCCACTAGGTTTGTCTCGT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCTACAAAAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 156-647 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUF01000028.1 Pyrobaculum aerophilum strain YKB32 NODE_28_length_30462_cov_19.7084_ID_2908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 156 25 100.0 41 ......................... AGATACTGTTGACGTTTACGAGATCATGGTAGAACTGTCAT 222 25 100.0 41 ......................... CAGTATCATCTTGGCGATGCACCTGGCTGTCTTCGGATTCA 288 25 100.0 39 ......................... ACATCGTTCATCGTAGCTATCGGTTTCACATCGCCATTA 352 25 100.0 42 ......................... TTCAACGAATTCCCGCACCTCCGCCTTTTTACACGTCGCCAG 419 25 100.0 43 ......................... GATATAGTCACCTATCGGCAACACGGCATTGCCGTGCTGTCTG 487 25 100.0 42 ......................... TCTTCTGGGCCGCCGTGGTACTGCTGGCCATTTACGCAGCAG 554 25 100.0 44 ......................... CTTAAAAATCTGGGATTATTCAAAATACTCTATTTCTCTCTTTA 623 25 96.0 0 ........................G | ========== ====== ====== ====== ========================= ============================================ ================== 8 25 99.5 42 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : TTGGCTTTTTTGCGGTTGAGATCGTTGCGAAGAACGGCGTACGCGTCGGCGGACAGGGAAATATATGAATGTAAAGTGAGTGTGAAAAGGCGCTTGCCGTACAACAAAAAACCAAAGAAAAACTTAAAAACCCAAAAGAACTTTAAGCGCATGCCC # Right flank : GTCAAAAGTCCTCACGTGCCCCCCGCCGCACTGACGATTGGCGTGGGGCTGAAGTAAAGTTTTTAGATGCGGTTTTTTCTAGTGTTTATGAGGGCTCTTGCTTTACTTCTAGCCGCGTTTTCCCTGGGGGTGTCTGTGGTGGAGGTGGGGTCGGGGTCTGTGGCGGGCGGCTTTGTCTTCTCGGGGGTGGGGCGGGTGGATCTGTTCTACGCCTGCGGCGTGGGTTCTGTGTCTAATTTCGGGGCGTGTCAGGGGGACTGCCTCGGCTTTATTGCGGCGCTTGAGGGGGACTGGCGGAGGCTCAACGTGACTATCGGCGGGAAGCCCGCGGAGGTTTTACACGCCGTGGAGTACCGCGTGAGCGACGCGTACAGGCCGAGGCTTTACGTGGTGGTGTTTAGAGGGCGCGGAGTGGGCGAGGTGAGGGTGGCGGGGCTGGAAACGCCGGAGGCCTACCTCCTGGCCAACTTCGGAGTAGGCAAGCTCCAGGCCTACGAGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 26949-23354 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUF01000028.1 Pyrobaculum aerophilum strain YKB32 NODE_28_length_30462_cov_19.7084_ID_2908, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 26948 24 100.0 44 ........................ CGGCCCACCGGTGGCTATTCTCTATCAAAACTTTCAACCATCTG 26880 24 100.0 45 ........................ TAATAGAAACCCGCGGCCACTGGGCGCCGCTGTGCGCCATTATTT 26811 24 100.0 41 ........................ ATTAGCCACGCCCCCACGTTGTCCTCACTCATGTAGTACGA 26746 24 100.0 44 ........................ AAACTCAAACTCCCCAAAATCCACCCCTTAAAATAAAACACGGT 26678 24 100.0 43 ........................ TCCCCCGCCACCGCGCGAGTCCGTGCGCCACGCCGCAATTGCG 26611 24 100.0 47 ........................ CTCTAAGCAAATTGCGCGCAGACCTGACAATTAATTGCAACAGGCGG 26540 24 100.0 43 ........................ GGACGGCCCACCGGCCGGCGGCCGTCAGGCCGGTACCGGGCCA 26473 24 100.0 43 ........................ TTTCTTATAACTTTTGAGAGCGCAGGAGTTACTATTATACGGT 26406 24 100.0 40 ........................ AGCTGTTACTTGACATGTACGGACTGCCGTACAGAGCGAT 26342 24 100.0 42 ........................ CACCCCAACTGGCGCATACGCCGGCGTGTTGACGGCCGCTGG 26276 24 100.0 46 ........................ TGTAATATCCACGGCGTCACACGGCGAATTATACAAATTTTGTAGA 26206 24 100.0 45 ........................ ATCAACAACAGCATGGGGGTAGCGGTGGCCGCAATATTACACCTA 26137 24 100.0 44 ........................ TCAACGTCTACTCAGCCTCCACCGGCTCCCTCCTGGCCAGCGGC 26069 24 100.0 45 ........................ CTACTTCTTAGCGCCTTCGCTAACGGCATTACGCCGATATGGTAT 26000 24 100.0 42 ........................ ACGGCGACACTAACATAACAGAAGTGCTCAAAGAAATTCTCC 25934 24 100.0 42 ........................ ATTCCCTACGCAATGCGAGGACGACATAATGGCCAGATACGG 25868 24 100.0 45 ........................ AGGAAAGCAGAAAGCCGAGGGACGGCAGGACAAACATTCGCAGAA 25799 24 100.0 45 ........................ CTAACAGCCAGACAATGGTACCCACAATATCACTAGGTGGCACCT 25730 24 100.0 47 ........................ CCACTTAGATTTAGAGCATCATATTGGAGCGGAACGGGGACGGTTGA 25659 24 100.0 44 ........................ CGATAGAAATGTATTACCGTTGCTGTCAATTGTGGCAACCACGA 25591 24 100.0 46 ........................ CACCTAAAGACCTCAACGCGACCGCCATAATAACATAGACGTTCAA 25521 24 100.0 39 ........................ TGATCAAGGACAAACGCGTAGCGCTTTGCGTCTAATAGC 25458 24 100.0 44 ........................ TATTTTAAGCACCGTCCTGCCGTAGCGATCTTTTGCAGCAAGCG 25390 24 100.0 43 ........................ CCACCAGCCTACCCCATAACCACTTCAGGCCCTCCTGTATTCT 25323 24 100.0 42 ........................ TTTAGGCCTAGGCGGCTTTCTCTCGCGGTCTATAACAACAGT 25257 24 100.0 41 ........................ CTTACTGATAGTGAACCCGATAGAGAGGCATTGCCGAGGGC 25192 24 100.0 46 ........................ GGGTAGGGCTGGGAATGTCCCAGTGGCGCGCCAATAAAACCTAGCG 25122 24 100.0 43 ........................ GGCCTTGAAGTGGTGAGGGGCGACCAGGGGATTGGCGTTAGGC 25055 24 100.0 45 ........................ CGACGCGGGACACTCTCACGCCCACGACGTCTCTAATCCTAACAC 24986 24 100.0 41 ........................ GGGTTTGGGTTTTTTTGCCCATTGACAGTTTAGTCCGAGAT 24921 24 100.0 42 ........................ GGTGGCGGTTTCAACGCGGCCATCCTCTGGAGCACCCCCACC 24855 24 100.0 38 ........................ TCACGTACGTCCTGCCCGAACGCTTGTACATCTCCATG 24793 24 100.0 41 ........................ CGTTTGAAGCCGCTCTTCAGCTCGATACGGCTAAAAGAGCG 24728 24 100.0 44 ........................ TGCGACTAAGAGAGTGTTAGAAGATATCATAACAGATATGAAGT 24660 24 100.0 43 ........................ AAAACAAAGTACTGAAAATCATCGGCATAAGGACTGCAATAAA 24593 24 100.0 47 ........................ TCATGGGGGGCCAAATTCGCACCCATAGAGTTCACATTAGAAAACCC 24522 24 100.0 41 ........................ ATATAAGATACAAAGGCCTCGGCCTTTTTTAGTAAAGCCTT 24457 24 100.0 43 ........................ CCACAGTATGTTAACACATGCCCGGCCTAAAAATAAACGGTCA 24390 24 100.0 45 ........................ ATGATAGAAATAAGTGCCGATTCAATTAACAGCACTTTTAACTAT 24321 24 100.0 42 ........................ CCTCTACGGCATGGCCATTATACTTTGATTCGTCATAATCCT 24255 24 100.0 44 ........................ GTTGGCAAATATACAGACGTCTATTTGGACAAGTAAAGTGGGTA 24187 24 100.0 46 ........................ ACGTTGATAGTTCATCTCACGGAGACTCCGGCTTTGTCAACTTCAG 24117 24 100.0 45 ........................ ACAGTTGTATCAGTGGCCGCCTTCGCGCTGTGGCTCCACAGCGTG 24048 24 100.0 44 ........................ ACGACCAATACCACAACTACAACTATTACTGTCAGCGCCATTTG 23980 24 100.0 41 ........................ CCTCTAACTCAACCCCCCATGCGTCGGCCAACACTTTGTAC 23915 24 100.0 43 ........................ TCTTGTACATAGGCATATGGAGAAAACAGCTGTTGCCGCACTC 23848 24 100.0 42 ........................ CCTCCGGCCTTTTCTGCGCCAGAACCCTGGCATAATTCAGCG 23782 24 100.0 46 ........................ CTACGTCTAAGGTCGGCAAAGTGGCGCTGGGCGCCGCCGCCATCGG 23712 24 100.0 41 ........................ CGAATATAGTGTTGCTGAACCCGTCGTATCAGATACTCACA 23647 24 100.0 39 ........................ CGTCTGTACACATACCTGACAATTGCACCAATCGGCGCG 23584 24 100.0 47 ........................ TTTCAAACAGCTTTTCAGCTAACTCCTTTGCTATACACTCCATATAA 23513 24 100.0 43 ........................ CCTTTTACTAAGTAGTCCTCTCCCAACAGTACATAGTTCTTCT 23446 24 100.0 45 ........................ ATGTGTTCTTTTACGGCACCTTCAACAAGTCGGTGTGTATATCAG 23377 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 54 24 100.0 43 GAATCTCAAAAAGAGGATTGAAAG # Left flank : AACACATATAAAAACACACCGCACGCCCCAGGGGGCGCCAAAGACCGGTTCAATAGAAACTCAACTATCAAATAACCTTTTTCTTGATGAAAAATGTAAAGTAACCGAAATCAAGTGTATAAACTGCTATTTACAACACTGTCTTTTCACACAGCCTCCACAAAGCCCCGATATTAAACAAATACTCTCTATATATTCTATATATTTTTCGGCATTTAAAAATCGTCGTACACAGCTCTCTTTACAAATTCCCATATTTCAACTGTCTTTCCGAGTTAAAAATTGTAAAGAGGGTATCCAATTTATAAAACGTCGTACAGCAACCCGGCGCACCCCGGCGCCGATTTGCAAAAAATGGCTTTCAACCCTCAGCTGCAAGACCCAGCCGTATACTAACAGATACAAACCCCTAAAAACGACACAAGAAAAAACCGACCCCCAAGACAAAACAAAAGGAGAAAAACTTAAAAACCCCCAAAAACACTAATCAAGAACCCCCA # Right flank : ACGGCGAAGACCAGTCGCTGTGTGAAAGGATGAAGAATAAATGCGTTAAAGTGTTCTTCAGACAAGAATCGGAGAGAAATGTTGAGGTCCGCGCTGGGCTCACTGGCGCGGTTTACGGCCTAGCTTTTATATTTGAAGAAGTAAAAGAAAACAGAAACAGATTGCACCAAGTCTGCGTGGCCGGAAGCGATCCCAGAATTAAAAGAGCTGTTGAGATACTAAGTCTTAAGTGCTATTTTTCAAGGCAGGGCATCGCGGCGTTTATGTTCACCTTGATCTGGTAGTCGTCGCCGTGGGGGCAGAGCTCTGTGTGGCTGGCAAGCAAGCCCGCGTGCGCCACGAAGTTCCTGTTGTCCTCAACACAAGGCTGGGGGTCCTCAAAGGCGTAGGGAAGAAGCTCAGCTAGTTTTGTGCACTGCTTCAGCTTCTTCTCTCTAAGTGCGTTGTACACGGAGTTTAACTCGTGGTGGACTACTTTCCTCGCCGTGGGCGTCAAGACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 10921-9805 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUF01000052.1 Pyrobaculum aerophilum strain YKB32 NODE_52_length_14079_cov_24.3597_ID_2956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 10920 25 100.0 46 ......................... ACTGAAAAACTGACGTCGGTAATAATTACGGCATCGCTCTTCACGG 10849 25 100.0 41 ......................... GAGGTGAGGGGCACGCAGTGCCCCAGGGAGGGGGAGCACGT 10783 25 100.0 42 ......................... TGCCGAGCTTGGACGCGCCGATACAGCTGATCCCTGTGGAGG 10716 25 100.0 41 ......................... GCAGTCGTCAGCCGCGGGATAGCCGCGCTGTACGATCTCCT 10650 25 100.0 44 ......................... CCCTAACGCATTGTTCGAGCTCTTCATCTGTGAGCAGAGAATCG 10581 25 100.0 43 ......................... CGTGTACAGTCTGTACTTCATGCCTCGTGAAGCCAGGCCGCGC 10513 25 100.0 41 ......................... CTGCGCCAAGGACCTCCCACCGCTTATAGACGTTGTACTAG 10447 25 100.0 40 ......................... AAGTCCGGTTTGGCGAAAAGCGCGTTTAAGGAGGGCATCT 10382 25 100.0 43 ......................... CAGAGTTCATAAGGTGGATAGGCGCCGAGCCTAAAAAGCTGAG 10314 25 100.0 42 ......................... CTCTACGACGAGAGGACTGGCAAGTACTACTCAGTGGGGACT 10247 25 100.0 44 ......................... ATAGCAACGCTACCGCGTTCAAACCGGATAAGACCTAGGTCGTG 10178 25 100.0 44 ......................... GCTAGATCTTATTAGTGAGAGCAGTCGCAGATATCTAGCTAGTT 10109 25 100.0 47 ......................... ACAGTGCCGTTGTGCGCAATAAGGGCAGACTCGGCTTTTATCTCTAA 10037 25 100.0 45 ......................... CGTCGCTTTCTGATAGTAGTGAAACGGTGGTTTCTCCGTGTTCAT 9967 25 100.0 44 ......................... ACACAGGTCAAGGGCCAAAGGGGGCCTCTTTACAAATAACCCAG 9898 25 100.0 44 ......................... GGAGCCTCTAATGCAATTACAGCTACACGGTCCACGAGAGGCTG 9829 25 96.0 0 ....................A.... | ========== ====== ====== ====== ========================= =============================================== ================== 17 25 99.8 43 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : CTACACCTCTCCGCCACGTACTTCGCCATTGCCAGCGCCTTTGCCACTGCATAAGCCGCCGCCCTCACGTCCACTGGCTTTGGAACAAGCCTTCTCAGCCTAATGGCAATTGAAAGGGGATTTGCGAGATTGCCGAGGAAGAGAGTGTCCCGCGCCCGCCAACTGAGCTTTAAATACAGCCTCCTCCCCAAAAGCCACATGTAACCCCTAACGCCCCTAATTTCAACCAGGCCTATGTAAAGGTACATGCCCCCCACATCCTCCACATTTTAAAACATTTGTTTATATGAATGTAAAGTGGTGGCGAGAAAGCGCGGCGAAGAACGGCGTTGGGTATACGCTGTTCTTACATAGTGCCATTATCATTACGGCGAAAAACGGCGTACGCCGTCGGCGGATAGGGAAATATATGAATGTAAAGTGGATAACAAAAGGCGCTTGCCGCAAGACAAAAAACCAAAGAAAAACTTAAAAACCCAAAAGAACTTTAAATGCAAGCA # Right flank : GATATTTGTAAAGCGTGTTAAATTGTCTGCGCCTCTCGGCGCCGTGTTTTGAACTCCTGGCAGTACGAATGAGTATGTCGAGCGGCTGTTAAAGGCGCAGTGGGGATGGGGGCCAAAATACAGCCCGTCGGCGCTTGATTTTGAGCGCGGCTACCGCCTTACCCACCTGGCGAAGGTCTGTATTGGGACGTAGACAAAGCGGAATTCGTCTCTCCAAGTGGGCATGATCTTCCCTTTTATGGGTATTTTCGCGCCGCAGAACTTACAGCGGTACTCGCCTCCCTTTTCCACCAGGTTTATTTCTAATATGTCAAAGCCCCTCCGCCTTATTACTACTCTGCCGCACTCGGGGCAGTAGGTGTGTTCATAGCGGTGCCCCGGCACGTTGCCCACGTACGCAAACCTCGCCCCCTCTTTCTTCGCCACTTCTACGTGTTTTTCCAGCGTTTCCACCGGCGTTGGGGGGAGGTCCATCATTTTATAGTCTGGGTGGAAGCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 16916-16144 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUF01000038.1 Pyrobaculum aerophilum strain YKB32 NODE_38_length_22564_cov_21.2626_ID_2928, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 16915 25 100.0 43 ......................... CTGCAACATAAATGGCAAATGTGGCACGAGGGTTTTGTCGCTT 16847 25 100.0 41 ......................... TAGCGTCATAGCGTCACCACGACGACGTTGTTGACTACGCG 16781 25 100.0 44 ......................... TAACTCGATATCCCCGTCCTCGTCTACTTGTTTGCAGTACCTCA 16712 25 100.0 43 ......................... GCAGAAGAATATACAGCCCTAAGTAACGAAGCGGAATCAACAA 16644 25 100.0 47 ......................... AACATTTCATTTATCCTAAACCTCAAGTCCTCTACTGCATCCTCTAT 16572 25 100.0 44 ......................... CAGATACTGTAACTGGAACTGAGAAACACGCCTTTGCTAATAAG 16503 25 100.0 43 ......................... GTATTGTTTCCGCTATAGTCTCTAGCGTCGTTATTTGCCATAT 16435 25 100.0 44 ......................... CAGTCGGCTTTGCATGTGATGCAGTAGGGCCCTGCAATGCGGCT 16366 25 100.0 41 ......................... TTTCTCTTATGGCTGAAAATATCATCAATTTTATTAATGAG 16300 25 96.0 39 ...A..................... ACATTAATCAAGGGACAAAGGCGGGCCCTTTACAAATAG 16236 25 96.0 43 ...A..................... GCCTCATTAACGACTGGGCCGTATATCCGCTGCAGTTCTTCCA 16168 25 96.0 0 ................G........ | ========== ====== ====== ====== ========================= =============================================== ================== 12 25 99.0 43 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : ATAAAGAGCTCTTCGGCGTAGATATCAAGCCCATTGCAGACAGGGCCCCCACGGCGCTTGAAATAGTGGGGATGAGGACTAAGGCCGTCAGAGTGAACATCGGGGACTCCAGGCTGGTCCCAGCCTTTCTGGGCAGGGCTCAACTAGCCGTGTTTGGCAACGTCGACGCTTGGCTCTCCCTTTTAAAACTAGGCGAGAGCGTCGGCGTGGGCATTTCGAGGGCTATTGGATTCGGCAAGTACAAAATAGAAGAAGTAGTCCTCCACGCCTAATTCCCTCCGATATTCACTCCCCCCCCCCCTTCCTCTTCACCGCGGCGAAGAACGGCGTTGGGCATTCGCCTTTTTGGCTTTTTGCGGTTGAGATCGTTGCGAAGAACGGCGTGTTCTTCCCCCGGTCGGCGGTATATATGAATGTAAAGCGAGTGGAGAAAGGAGCTAGCCGTACAACAAAAAACCAAAGAAAAACTTAAAAACCCACAGGATCTTTAAACGCAAGCC # Right flank : AATCCCTTTTACACGTCTCCAGCTCGGCCTTGGCGTTTGCCAACTCCTCAGCCAGTTCTACAATTCTCTCCCCGCCGCGGAGAATAGTGGCGAGTTTTTTCGCACATAATTTTAGCGGCTTCAGACGGCGCTAATTGTGCCATTTTTTTCACTTCCTCCTCGGGCATGTTTTTAAGCAGTAGGGGCATTGAGAGGTGGGCCCACTCCGTAATGAACTGCCACCACTCTATTGTCCTGCCCGTTAATTCTACGTATTTGCTCATCCACTCTAACGCCGCTCTTTCGGGCGAGTGAGCTCCCTCCTCGCCACGTTCCTCCCATACTGTTACTAGCTGGAGGTATTTTTCGGCGGCGGACTGGAATTTTATAGTGTCCACCGCCGTAGTGCACTTCTCGTAAAAATCAGTAAGAGTGTACGCGCTGTTTTCAACTGCGCACTTCAAGCCCGCCTCAATGGCCTCTATTTCTTCTTTCGACAAGCCGACTGAAACGGCCAGCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 19094-19855 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUF01000038.1 Pyrobaculum aerophilum strain YKB32 NODE_38_length_22564_cov_21.2626_ID_2928, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 19094 25 100.0 46 ......................... CCGAGATCTTCAACAACCTTAAAATTCCTCAATTCGTTCTCCTCTG 19165 25 100.0 40 ......................... TTTGTAAACAGCTGTTTTAATACGCAGAATATATGAGGCG 19230 25 100.0 41 ......................... ACCTCTTGACCTCTCCGCGGATTGGACAATCTCACCACCAA 19296 25 100.0 43 ......................... TTTCCAGCAGTGTACGAGTTACTGAAGGGGGGTACCAGAGTAG 19364 25 100.0 41 ......................... AATGTTTCGCCAACAGCTGTTGGCAAAAGGTTATGAGAGAG 19430 25 100.0 43 ......................... TCCAATGTAATTTTGCCACTTTCAGCGAGGAATTTAATTATTT 19498 25 100.0 45 ......................... ATCTGCAAGAACACCGACCTCACCGAGGGCATCATTGATGACCTT 19568 25 100.0 38 ......................... ATCTAATGGCACCTCGTTAGAGGCGCCTACAGCAACGT 19631 25 100.0 40 ......................... CAAAAGACTACGTTACGCTACTGCCCACTGAGAGCTTCAA 19696 25 100.0 40 ......................... GTATTCCCGACAGGGCCTCGTTCAGCATTGTCTTTAGGAA 19761 25 96.0 44 .................A....... CCACTGTAATCTGCTACGATTGCGGTGGCAGCGTACTGGCCGTT A [19770] 19831 25 88.0 0 ........A..G............G | ========== ====== ====== ====== ========================= ============================================== ================== 12 25 98.7 42 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : CTGCACTTCTCAGCCACGTATTTCGCCATTGCCAGCGCCTTTGCCACCGCATAAGCCGCCGCCCTCACGTCAACAGGCCTTGGCAACAGCCTTTTCAGCCTAATGGCAATTGAAAGGGGATTTGCGAGATTGCCGAGAAAATAAGTATCCCGCGATCTCCAGCTGAGCTTTAAATACAGCCTCCTCCCCTAAAGCCACATGTAACCCCTAACGCCCCTAATCTCAACCGGGCCTATGTAGAGGTACATGCCCCCCACCTCCTCCATATTTTAAAACATTTGTTTATATGAATGTAAAGCGTTTACGAAATAGCGCGGCGAAAAACGGCGTTGGGTATGCGCCGTTTTTGCCCTCTGCAGTTATCATAACGGCGAAAAACGGCGAACGCCGTCGGCGGATAGGGAAATATATGAATGTAAAGTGGATAACAAAAGGCGCTTGCCGTACAACAAAAAACCAAAGAAAAACTTAAAAACCCAAAAGAACTTTAAATGCAAGCC # Right flank : GAGAGCCAAGAGCTTGTGTGTAGCTGCCAACGGTTAGATTCTCGCCAGAGGTATTGCCGCTTATATGCCGGCTGAGAGGAAGGCGCATAAATCGGCCGTGCCGCCAGGAGTCCCTTGCTCTTCACAAAGGCGTCTGCTCCGCCGGGAAACGCTGTGAAATGTCGGCAGTAGTTAAGGCTTGTGGAGGAGGCCCTCGGCCTCTCGGATCAGCGGCTCTATTAATGGTATGCGGGCTTTTACGTGGGTTATGTCTATTCTCGTCTCGTGGAAGCCGTTTACGTGGAGGAAATACGCCGCGTCCCACGCCCTCCACGCCGCGTCGCCGAGTTTCTGCGCCGCCTTGTCTAAAAGCCCCACAGTCCACCTGCCTCTGCTCAGCGCCTCTTTTGCCTCGTTAAGACCCCTGGCTATTGCCAAGGCCTTCACCGCCTCCTCCGCCGCCTTGTACAGCTTTTCGCTCGACTGAACTACATCGCCTCTATCCACAAGCGAAAGCGCCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 1968-1061 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUF01000053.1 Pyrobaculum aerophilum strain YKB32 NODE_53_length_13725_cov_20.2064_ID_2958, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 1967 25 100.0 41 ......................... CGCTCTGTAGACGTTCAGCGCCTCCTCAACGATCTCATCAA 1901 25 100.0 49 ......................... ATGCTATATACTTCATAGTCATAGCCATAGCGCCTAATTAGCCTTGTTA 1827 25 100.0 40 ......................... TGAGACAAGTTGCGCCGGTCAGAGTCAGACGCCCGGTTGT 1762 25 100.0 46 ......................... CAAATGATTTCCTGAACTGCTCCGTTTGCAATTGAATATCTGTTTA 1691 25 100.0 47 ......................... ACTGGCGAGATAACAGTGCCGCAATCGACGCAGACATAGTGACCGTC 1619 25 100.0 36 ......................... CGATTTAGTTGCCGGGCTGAATCTAAAGCCCAGCTC 1558 25 100.0 42 ......................... ATAAAGTATGTGTCTCAACGCATATGACAGAAAAGAATTAGA 1491 25 100.0 42 ......................... CTGATAACTTCTTTACTCACCCTGTCAGCTTCGGCGACAGCT 1424 25 100.0 42 ......................... CCGCCTAAGTCTTCGTCTCTAATAACGCCTAGAGTGAATATC 1357 25 100.0 43 ......................... ATTGCTTGCTCTATAATCAGCCACATCGGAAGTTTCTTCTTCT 1289 25 100.0 40 ......................... TTTCGCTATACGCGGCGGATATTGACGCGCTGAAGGGCGC 1224 25 100.0 45 ......................... GCGCCTATATATTAGCTTAGCATTTTTTTCACAGTACTGTACTCA 1154 25 100.0 44 ......................... CGGTGTAGCCTTACGACTGGGAAGCTTGATGACGGATCTACAAA 1085 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================= ================== 14 25 100.0 43 GAAGAATCTACAAAAGAATTGAAAC # Left flank : TATTAGCTGATTAGCGGTTCGGCGTATTTTTCGCCGTATTACACCAATGCAGCCTTGGCCATTTCGCACATGCCGTAGTAAAGCTCCAATTGCTTCACTACCTTGCCCCCCGGCAAGACAGGCCGCTTAAAGCATCTGCAACGCCGATGCCTAAAGTTCTCTAAAAACATAAAGAGTGAATGCGCGTAAAACTGCCATGGACACACCTCTCTGCCAAGATTTCAAACCCTTGGATAAGTTTACAGAATAAATTTCAGATTTTACGGTATAATTGTTTTTTAGCCTTTACTTTGTAAAATTAGACATTTTGAGCGGATGTCCCTCTGCTTTGCCTCTATCTTTTTCTATTGTGTCTTCGTTAATGTTTATCTCTCTACCCAGTGATGTGGTAAGCGTGCTGTGGCGGCCCGCCGAAATGCCCCAGCCGCCGAGGAGGAAAACAGACGTGAGGCAAAAATTTATAAAGCGGGAAAAACTAACATCCCGAATAAAAACCCACA # Right flank : ATTTAGATTGATATCGGCGGCGATGTGAAGGCTGAACGGTTTGTAAGGGGGTCTGAGGACGTGCTGAGGCGTAGATACGGCGATGACGCAGTGAGAAAGCTAATTGAAGTGCTTACGCCGGCAAGAGAGGAAGGGACGATAGATCTGCCGCTTGCAGTTTACGACGAAAAGGGCAATATGGTAGCCCGTATTGTAGATTTGAAATACGAGTTCGTCAAGGGAAAGCGGAAGGGTAAGCGGTCTGCGGGTCGGCAGGTGGTAAGCCAGTGCACCGGAGAGGACTGTTGCCTGCGCATAATTGTGAAATACGAAACAGAAGGAGAAAGGGGGCAACTTAAGATGGAATGGTATTGGGCAAAGGGGCAGAAAAAGAAAGGTGAGGCAACGGTAACGTACTACTACGAAAGGGCGAACATCAGCATCAAAAACGACGTAGAAGTCGCCGTACTGAAGGCGCTAACGGGAAAGAGCGTGGAAAAGGGCAAAGTAGCGTTCTTCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCTACAAAAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //