Array 1 397831-397607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039690.1 Phreatobacter stygius strain KCTC 52518 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 397830 32 96.9 33 .........T...................... ACGCCGAAACGAATGGTTTTCGACGACAGGTCC 397765 32 100.0 33 ................................ GTCTACGGGGCCGGGGACTGGAAGCTCGGCCAC 397700 32 90.6 31 ...........TG................G.. GCGATGGAGCGGAGAAACAGGGCTTGGTCGC 397637 31 62.5 0 G.G.T.G.T.C.T..C...G.-.A...A.... | ========== ====== ====== ====== ================================ ================================= ================== 4 32 87.5 33 AGTCGCTCCCTCACGGGGGCGTGGATCGAAAC # Left flank : GCTGGCCGAGATCGAGCGGCTCAACATGGAGGCGCTGGCGCTGATGGTGACGAGCCACGGCGTCAAGCTGCGCGGCTTCCCGGCCGACATGCTGGCGCTCGCCCGCCGCCACGCCGGCGACCTCGTGCGCGATCTTGGCACCCGCAGCCCGATGGCCCGCAAGGTGGCGGACAGCTACACCGCCTTCCAGGCGCGCATCACGCCCTGGACGCGGGTGTCGCTGCATGCGGCGCTGGGGGCAAGGGAGGCGTAGGGCGAGGCGGCGAGGACGAGCCCCTCGTCCTGCCGGCGATGCCATTTGTGGGGCGCCCGGTCGGGTCTGCGCGAACCTGAAGCGCACATGCCGCGCCCGGGTGGTTCGCGCTGCTGCCAAACCACTCTTCCCAATCACGTTTTCCGGGTCGGGCTGCGCGGCTTCGGAAGAGTAGGGCTCTCCGGACGGTCCGGTTCGCGCAACTGGCCAATTTTATCACGCCGCAGCAATATGTTAGGGCTGTGAG # Right flank : TTTCGTCCTCGTGGAGTTCGCAGAACGCGCCCTCTTCCGCCGCCTCACGCGCCATCCGCCGTCCGCTTCAGCACGACATGGGTGGCGTTGGCCGTCAGCACGTGTTCGGCGCAATGATAACCGAGCTTGCCGGCGTCGAGGCCGGCGAACAGGCTTTCGCCGGACCCGAGCAGGATCGGCGCGATGGCCAGGTGCAGCTCGTCGATGAGCCCGGCGCTCAGATATTGCCTTGTTGTCTCGACCCCGCCGCCGAGGCGCACGTCGCGGCCGCCGGCCGCGGCCCTGGCCTGGCGGAGCGCGGACTGGATGCCATCGGTGACGAAATGGAAGGTGGTGCCGCCGGCCATGGCGATCGGCGCGCGCGGATGATGGGTGAGCACAAAGACCGGCACGTGATAAGGCGGGTTGTCGCCCCACCAGCCTTTCCAGCTGTCGTCAGGCCAGTCGCCGCGGATCGGGCCGAACATGTTCCGCCGAGGATCCAGGCGCCGATAGTGTCG # Questionable array : NO Score: 3.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGCTCCCTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4873780-4875172 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039690.1 Phreatobacter stygius strain KCTC 52518 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 4873780 29 100.0 32 ............................. TCGATGGCGTCGCAGCCGAAGTCGTGCTCGAG 4873841 29 100.0 32 ............................. CAGGCCGTGGGGATGGCGTGATGGCCACCGAC 4873902 29 100.0 32 ............................. CTGTCGACGATGATCTCGCCATCGAGCAGTTC 4873963 29 100.0 32 ............................. GGCCTATGAGTTCGGCAAGATCCTGAAAATCT 4874024 29 100.0 32 ............................. GCGCTGACGCTGAAGGATGGGCCCGTCACAGC 4874085 29 96.6 32 ..........G.................. TCGCCTGGCCCGGGCATCTCAGCCACCGTATT 4874146 29 100.0 32 ............................. CTTGCGTTTTTCCCGCGCCACCTGTTTCCGGA 4874207 29 100.0 32 ............................. CCCTCCAAAACGCCACGATGAACCCGCCGGGA 4874268 29 100.0 32 ............................. AACACATCGACATTTTCGCCGGCGCTGCAGCG 4874329 29 96.6 32 ...........G................. GCCGGAGTTCCTGTCGGGTCTGTTCAACGCGG 4874390 29 100.0 32 ............................. GCGGTCAGGAGCGTCACCGAATTGAACCGCCA 4874451 29 100.0 32 ............................. ACGGCTAATGTCGCAGTCGGGCGATATGCGGT 4874512 29 96.6 43 .....T....................... GCAGCAGGCCAGCCAGAGCGAGGCCGCGGCCGGTTCGTGATGT 4874584 29 100.0 32 ............................. CGCATGGTGATCGTCACGGCCACGCTCGAAAT 4874645 29 93.1 32 ..................CC......... TGTCAACCCGGTCACGAGCCTCGATACCGGGG 4874706 29 100.0 32 ............................. ACGGCTAATGTCGCAGTCGGGCGATATGCGGT 4874767 29 96.6 43 .....T....................... GCAGCAGGCCAGCCAGAGCGAGGCCGCGGCCGGTTCGTGATGT 4874839 29 100.0 32 ............................. CGCATGGTGATCGTCACGGCCACGCTCGAAAT 4874900 29 93.1 32 ..................CC......... TGTCAACCCGGTCACGAGCCTCGATACCGGGG 4874961 29 100.0 32 ............................. CGATCCTGGCCGGCCTCTATTCGAACCAGGGC 4875022 29 100.0 32 ............................. ATCGAGATCTTGCGTGAGGCCGTCGACCACAT 4875083 29 100.0 32 ............................. GCGTTGATATGGGGGACGCTTTGGAAGGGAAG 4875144 29 82.8 0 .............AG.........CTG.. | ========== ====== ====== ====== ============================= =========================================== ================== 23 29 98.1 33 GTGTGCCCCGCCTGCGCGGGGATGAACCG # Left flank : GACGACAAGACGCCGACCCGTCTTGGTGAGGAAACCCGTATGTTGCGCCTCGCCCGTTGGGCCAATGGCTCTTTGTTGCCTTGGTGCGAGGCTGAAACGGAAGGACGCGCCTGGCGCCTCTCGGAGATCGCGGTGCGGGCGAGGCGAGTCGCCGAGACCGAGGCGCCGGATCTCGCCGCAGCCGCGGCAATCAAGGCCGCTCAGCAAGGCTGGCCCGGTCGCTTCGATCCGCCGCCCATCCTGGCCTTGACACCGGGGGCGTTGCCCGGGGTCTGGGAGGGCGCATGGAAGGACGCGCGGGGGCAGCGGCAAGCGGTGCGCTATTCCCAGGCGACCGGATTGGAGACCATGGCCTAACGAGTATCCCACGCAGATCGAGCACATGCGCGCCGCGCCTGTCGCTCGGGAAGGCCATTGTGCGCCCCTGGACCCCCGGAAAAAATCGGTAGCTTTTTCGACATTGCAAATCATGCAATGAATCAAATGGTTATCGGGGATGA # Right flank : GTCCTTGTTGGTAATCCGATCGGAGTGCCGAAATCTTGCAGCTCTTCCTGATACGTACTATTATACGTATCAGGAAATGGAGACTCCCATGACACGCGCCGAGTTCAAGGGATCGATCACGACCACGGGCCGTTCCGAAGCCTTGCGGCTCGATAAGGCTTTGTTCAAGGCTCATCCCGAATTCAAACAGCGGGCGAAGATCCGCGCCCACGTTCTGGGGCCGGGCAGCCTGCTGGTGACGCTGGATGCCGGCGAGGCGGAGCTGGCGCCGGCGGATGCGGTGGAGCATGATCCGGTTGTTGCGGCCTACCTGTCCTTCCTCGAACGCGACATGCGCGAACATCCTGAACGCCTGCAGCCCTTCACCGAGGCCGATATCGCGCGCATTCAGGCGCTGACCAGGGATGTCGAGGTTTCCGATGACGATGTCATTCCCGACGATGTGACCTTGTGACGCCGCCGGCCGAGCCCCTTGCCGAACGCCACGGCTGGAAGCTCTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4882370-4885022 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039690.1 Phreatobacter stygius strain KCTC 52518 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4882370 29 100.0 32 ............................. ACACCGTGCTGACGGACGAACAGGTTGCCCTC 4882431 29 96.6 32 ............................T GCACCCGATGCTTTCCGAAGCGGGCGCCGGGA 4882492 29 100.0 32 ............................. GCGTCGACCACCACGTCGCTGCCGTCATGAAC 4882553 29 100.0 32 ............................. CGGCGGGTTACGCGGGCAGCCGCCAAATCGTT 4882614 29 100.0 32 ............................. GGGTTGCAGCATGATCGTGGGCTTTTGCGGCC 4882675 29 100.0 32 ............................. TCAGCGAACTGGTCGAATTTGGGCGTTTTCAA 4882736 29 100.0 32 ............................. GGCCTCCTGGGTCTGCTGCAGGGTGACGCCGA 4882797 29 100.0 32 ............................. GCCGGATCTCCGGCACACCCTGGCGCATCGAG 4882858 29 100.0 32 ............................. GCCAGCGACGGCAAACACGGGAACCAGACCAC 4882919 29 100.0 32 ............................. GTCCGCTTCGATCCCGATCCGGGCTACGTCGC 4882980 29 100.0 32 ............................. AGATCGGTGGTGACGCGCCAGCGCTGTCTCAT 4883041 29 100.0 32 ............................. ATGGCGCTCAGCGTCGGCTGCATCGAAATCGT 4883102 29 100.0 32 ............................. ACCGACCGCACGCCGCACTATTTCAGCGCGCC 4883163 29 100.0 32 ............................. CGGAGGCGTGACCATGGCGGACCCGATCAAGG 4883224 29 100.0 32 ............................. CACTACCTGGTCAGCCATGCCGACTATGGCGA 4883285 29 100.0 32 ............................. GTGTAGGGCCATGAGACGATATTGCGGTACCG 4883346 29 100.0 32 ............................. CAAGGCCGGATTGGCAGCTTCCCGTTCAACCC 4883407 29 100.0 32 ............................. TTTCCCGAGCCATCTTCGGACGTCTGAGATTG 4883468 29 100.0 32 ............................. CCGGAAACCGACGCCAAACTGCGCGAGGTTTC 4883529 29 100.0 32 ............................. TCGATTGATGTCTCGGCGGTAAGGGCGTCGAG 4883590 29 100.0 32 ............................. CTGTTCGGCTTCTCGCCATTGGATCACTACGC 4883651 29 100.0 32 ............................. ATGACGAACACTTGCTCGCCGGTCAGCGCGGT 4883712 29 100.0 32 ............................. GTCCTGTCGCAGACGGCGAAAGACAACATCGA 4883773 29 100.0 32 ............................. ATCCTCGAGCAGGTTGGCGAATCGCCTGCCGG 4883834 29 100.0 32 ............................. ACGCAGGTGTGATCGAGCGGCAGCCCTGGCAC 4883895 29 100.0 32 ............................. GGAGACGGGCACCCACTGGCCAACGGCCGAGG 4883956 29 100.0 32 ............................. CCGCAAATTGGGAGCGGCTGCTGTCGGGCCGC 4884017 29 100.0 32 ............................. CCCTCCAGGCCTTTGGCCAAGGGCCCGAGCAC 4884078 29 100.0 32 ............................. CATAACGGTGTCGCCGCCATGCTCTCGGTACA 4884139 29 100.0 32 ............................. GTCCAGGCGCCGACGGCAGCATCCGGACCCGG 4884200 29 100.0 32 ............................. GTACGAGCCGAGAGCATCCAGGCCGGCCGCGC 4884261 29 100.0 32 ............................. CGCTCGAAATGGGACGCCTGTCGCTTGCAATC 4884322 29 100.0 32 ............................. GTTCGCTGCGGCCGCTTTCTCGGCGAGTTTTT 4884383 29 100.0 32 ............................. AGCATCTAACGGCCGTCGATGGCGCTGTCATC 4884444 29 100.0 32 ............................. TATTCGGCAGGCTGTCAGAATATATCGCTGGC 4884505 29 100.0 32 ............................. CTGAGGCGGCAGGCTGGAGCCGGCCAGAGATC 4884566 29 100.0 32 ............................. GCCATTTCATGGCCCGAGGGACGGCGTGCGCT 4884627 29 100.0 32 ............................. GCGGCGACGCGCGACCTAATCAAGCTGGCCGG 4884688 29 100.0 32 ............................. GCCGCGGACCTGGTCCGCACTGGCTTCGGCGA 4884749 29 100.0 32 ............................. GACCCGCGCTATTCGACCGCCTCGCCGCAGTA 4884810 29 100.0 32 ............................. CCGCCGGCCCCACCGCGGCCTCCGCGCCCGGT 4884871 29 96.6 32 .C........................... CGATCCGCGTTCGGCTCGCCGAGGACATCATC 4884932 29 100.0 32 ............................. ACGGGTGAGCCTTGGCAGGCCGCGAAAACCCC 4884993 29 86.2 0 ..................T.....TGG.. | C [4885018] ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.5 32 GTGTGCCCCGCCTGCGCGGGGATGAACCG # Left flank : CGCCTCCCGACGAGGCCGAGGATGCGCCCGAGGCCGCCGATCCCGCCATCCCACGCAAGGAGGCGGCCGGCGATGATGGTCATCGTGGTTGAGAATGCGCCGCCGCGCCTGCGCGGTCGACTGTCGCTCTGGCTGGCCGAGGTGCGCGCCGGCGTCTATGTCGGCGTCTATTCGCAGCGCACCCGCGAGCGCATCTGGAAAGAAGTCGGCCAGATGATCGGTGAAGGCAACGCCGTGATCGCCTGGAGCGCCCCGACGGATTCCGGCTTCGCCTTCGAAACCATCGGCGAGAATCGCCGTGAGGCAGCCGACTTCGACGGACTCACCCTGGTCCGTTTCAAGCCGCCGAAAGACCCGGGCGGGCCGGTCGTCTGAGGATCGGATCGCGGCCGCGTCCGCTCTCGATCGCGGGCCGAGGATACCCTTCAGAACCCAGCGAAAATTCGGTGGTTTTTTCGACATTGCAAATCATGCAATGAATCAAACACTTGTTCGGATGA # Right flank : GTCCTTCAATTTATTGCAGCATTGCGCGTTGTACGGTCGGTCTTGCGGTTTCGCGGTTCTGCTCTGCAACCCCTGGATCCCTTCCCCTCGCTTCGCTCGACCGGGGATGACGTCGTGGTTCTTGAGCGCATCTGGCCGGCCGGCGCCCTCCCACTGATCCCGCGCGCGGCAGGTTTGCGCCAAACCATGCCGCAATCCGCGGCAAATCGCTTAAAGCATGGGCACCCGGCGAGCGCTCGCCCCAAGGCCCGATCGATGACCGACCAATCCATGTCCTTGCGCGACGATGCCCGGGTCATGACCCTGATCAGCGCGGCGCATTTCTCCAGCCATTTCTTCCAACTGGTCCTGCCGCCGCTGTTTCCGGTGCTGAGGACGGCCTTCGGGGTGAGCTATACCGAGCTCGGTTTCGTCATGGCGGTGTTCTTTGCCGCCTCCGGCCTTGGCCAGGTGGCGGCCGGCTTCCTGGTCGACCGGTTCGGGCCGCAACGCATTCTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //