Array 1 242560-241145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXW01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N38914 N38914_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242559 28 96.6 33 -............................ CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242498 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242437 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242376 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242315 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242254 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242193 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242132 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242071 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242010 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241949 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 241888 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 241826 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241723 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241662 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241601 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241540 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241479 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241418 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241357 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241296 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241235 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241174 29 96.6 0 A............................ | A [241147] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17762-16147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXW01000051.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N38914 N38914_contig_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17761 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 17700 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 17639 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 17578 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17517 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17456 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17395 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 17334 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 17273 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 17212 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 17151 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17090 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17029 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 16968 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 16907 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16846 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 16785 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 16724 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 16662 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16601 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16540 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16479 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16418 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16357 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16296 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16235 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16174 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //