Array 1 2446-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACCK010000047.1 Corynebacterium macginleyi strain 160806 HBRU96_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2445 29 96.6 32 ............................G ACTGCGTTCCGTGTGAAGAATTGGGATAGTGA 2384 29 100.0 32 ............................. TGCTTACCGCCCTCAAACAGGAACCCTAGGTC 2323 29 96.6 32 ............................G TTATCAAGCGAATCATCACCACCACGCGAGCG 2262 29 100.0 32 ............................. CAAACCAACGAAAGGCAAAAACCAAACACAAA 2201 29 100.0 32 ............................. CGATCCGCGTTGACGCGGAGCGCATCGACCAC 2140 29 100.0 32 ............................. AACTCGCCCCAACCAGAAAAGGAAGAAACCAC 2079 29 96.6 32 ............................G CCGACTGGAACGAAAACGCCCTGAAAAAGGCC 2018 29 96.6 32 ............................G CACGCCGGAGACGAAACCAGCCACCGCGGCAA 1957 29 100.0 32 ............................. CTATTGCCGCTTAACGGGTACCACACCGCCCC 1896 29 100.0 32 ............................. CGGATTCTAGCCCGAGGTCGCGCACGCGGTTA 1835 29 96.6 32 ............................G CCCGCGAGTGCGGGCATCAGCGCGTAGAATCT 1774 29 100.0 32 ............................. ACGCTTCTAGAACCGTGTCACGCGACTCTAGG 1713 29 100.0 32 ............................. AGCAGTCCGCGAGTCCACCCAGCCTTCACCAA 1652 29 100.0 32 ............................. CCCGGCCCTGATGACACCCACAGGACGCTCCA 1591 29 96.6 32 ............................G GTGAAAAAATCGCAAGGCAGCGAGCAACTATC 1530 29 100.0 32 ............................. CTATTTGCTGGTGGGTTGTACCAACCTCCGTT 1469 29 96.6 32 ............................T CAAAAGAACGCGACTCAGTCTTATCTGCACTG 1408 29 96.6 32 ............................G GCTCGAAAGAAGTGGTTAGAGCAGGTAGAAGC 1347 29 96.6 32 ............................G CTAATCGCTTAAAGTCTCTGCAATAGAACCAG 1286 29 100.0 32 ............................. ACTACACCTTTAGGTGTTCCATATCTAAGCCC 1225 29 100.0 32 ............................. TCGGCAGCATCATCATCCGGGTGCACCGGGTC 1164 29 100.0 32 ............................. ACCGACGGCTCGTATTGGCGTTGGCGGAACCG 1103 29 100.0 32 ............................. CGGTATTGATTTGAACTGGCTCGAACATGGCG 1042 29 100.0 32 ............................. GCCTTGCACCTCAAGTACCTCACGCTCGGCTA 981 29 100.0 32 ............................. AGCTGGGTTTTCAGGCGCTTGGCTCTACACTC 920 29 96.6 32 ............................G GCGGCACGGTGGTTTATGCCGGTGCCGCAAGT 859 29 93.1 32 ..........T.................T AATCCACGCAGGAGAGCTGGGCACCATCACCG 798 29 100.0 32 ............................. ACACCGCAAGGAATAACAGCGGTGTATTTTAG 737 29 100.0 32 ............................. TCCTTTTCAGACACGCCCCGGCGACAAAGGAC 676 29 96.6 32 .......A..................... CGCTGGGAGTGGGGTGCGAAGGTGTGGCCGAC 615 29 96.6 32 ............................T CGGTCGAGGGTGATTTCAGTGAGAGTGAGAGC 554 29 96.6 32 ............................G GTCTTGCACTGCGGCGGGGTCATAGTCGATGG 493 29 100.0 32 ............................. CCCACACCCTGCGGCATCTGCTCACCTTCGAG 432 29 100.0 32 ............................. CCGATACGCTGAATCAGCCCGCGGCTGCGCCA 371 29 100.0 32 ............................. GCCCTGAAAAAGGCTAGGGAATACTCTGATTT 310 29 100.0 32 ............................. GGAGATACCGATTATGGCGAGGCCAGCGGCGT 249 29 96.6 32 ............................G TTCAGATTGACACTGAAAGGACCCAGTTATGA 188 29 96.6 32 ............................G GTGCTTGACCTGGCGGTCATGGACAAAGCGAT 127 29 96.6 32 ............................G TCCGCGATGACGTATACGGGAACGCCGACATC 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 98.5 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GAGCGAACTTGAAGTCATTGCTTCCGGTCTTAACTGGGCAGAAGAGGACACGCTGTCATGATGGTGCTGGTTGTTACTGCTTGTCCCGCTGGGCTACGGGGCGATCTGTCGAAGTGGCTCATTGAGCTGACCCCTGGTGTATTCGTCGGACGTCCTTCTGCTCGTATTCGTGATTTGCTCTGGGAGCGTACAACCGAGCTTTGTAAAGATGGGCGTGCACTTATGGTGCATTCAGCTGCGAATGAGCAGAGAATGGAGTTCAAAACTCACCGACATCATTGGGAACCCACGGATTTCGACGGGATTACCTTGATGAGGCGGCCGGCTAAGTTTAAGCAAGCACCGCGAAGGACTGGGTGGTCTCAAGCCCGACGTAACCGTAATTCTTATAAGAAACAGAAGGGCAGGTAGTAGGCCGCGCGGAGCTTCGGCAGTAGCTTCCTTAAATTACAAGTTGTACGTAGAATTGACCTAAGGCTCGAATTTCTGCTGTTCAGCAA # Right flank : CTAAGCGGGGTAACACGGGCCATGATGAGAGAGGTGAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108242-107847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACCK010000017.1 Corynebacterium macginleyi strain 160806 HBRU96_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108241 29 96.6 32 ............................C TAAGCGGGGTAACACGGGCCATGATGAGAGAG 108180 29 93.1 32 ...A........................C AGCCGCACGCGCTCGAGAGCTTTCACCACATT 108119 29 100.0 32 ............................. AGGGAGATACTGTAGTTTTCGAGACTGTTGAT 108058 29 100.0 32 ............................. TCCGCGATGACGTATACGGGAACGCCGACATC 107997 29 100.0 32 ............................. TCCGCGATGACGTATACGGGAACGCCGACATC 107936 29 96.6 32 ............................C TAAGCGGGGTAACACGGGCCATGATGAGAGAG 107875 29 82.8 0 ...A...................A.AT.A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : GGGATGAGCCGTCCGCGATGACGTATACGGGAACGCCGACAT # Right flank : CCTTGTTTTGGTAGCCCGAATCTACTGCTGGGCTTAGTAATCAAGATATCGGAAGGCCATCCAGCAAACAGGTTCGTCGCTTGACTGATGAGAACGGTATTCATTCCTGCTGATGCTCCACCGTCGGCTGCAGCCGCAGCATTGAACGCCATGTTCGACTGATACTGTCCTATGCCTGTGACACTTGGCTCAAGTAGAAAACCGTGCGACGCAACTTCATCGATGTGAATTTTGGTTCGCGTTTGAGCTAAGCCGAATTGTTCCGGCGGCTCCGTTCGAAGTGAAAAGGCGTGACTAACCAGCAAGAGTTGTTTCTCGTAGGACCGAGAATTGGTCTTTCGCGAGCAATTGACTAGTCTTTTGAGAGCGGGATGTCGTAGTCTACGACATGAATCCCGCGTGGGGCTATAGCTCAGTCGGTTAGAGCTCCGGACTCATAATCCGTCGGTCCCGGGTTCGAGCCCCGGTGGCCCCACGGTAGAAGGAGGCGTCGGCAAGCA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //