Array 1 109773-108035 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCM01000001.1 Salmonella enterica strain BCW_2499 NODE_1_length_554443_cov_3.03037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109772 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 109711 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 109650 29 100.0 32 ............................. TTGATTTCCCCGCCACTTATTCCCCATTGCAT 109589 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 109528 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 109467 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 109406 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 109345 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 109284 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 109223 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 109162 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 109101 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 109040 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 108979 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 108918 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 108857 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 108796 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108735 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 108674 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 108613 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 108552 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 108491 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 108430 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 108369 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 108308 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 108247 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108186 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 108125 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108064 29 100.0 0 ............................. | A [108037] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127506-126442 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCM01000001.1 Salmonella enterica strain BCW_2499 NODE_1_length_554443_cov_3.03037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127505 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 127444 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 127383 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 127322 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 127261 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 127200 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 127139 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 127078 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 127017 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 126956 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 126895 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 126834 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 126773 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 126712 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 126651 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 126590 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 126529 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 126469 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //