Array 1 1581-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKHP01000021.1 Caloramator mitchellensis strain VF08 ABG79_contig000021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1580 29 100.0 39 ............................. AATTTCTAACGAAATTATGGGGCTAAGGAGGTGAAAAAA 1512 29 100.0 35 ............................. TCGGACTCTATGAGTTTTTTATTTCATCCTCATCA 1448 29 100.0 35 ............................. TTGAATGACAACAATATTGAAAAAGTTAATATTCA 1384 29 100.0 39 ............................. ATATTTGATATTATCTACTGAAATGATATTATATAGCTT 1316 29 100.0 37 ............................. TAAATTAAAAGAAAACGTTTTCTTGACATTAGATTAA 1250 29 100.0 36 ............................. TTCATATGTGCAAGACATTTATAATTGCTATTAACT 1185 29 100.0 38 ............................. AGTGCTGAAATATCTCCACTTCTTTCTATGCCTTTTAA 1118 29 100.0 37 ............................. TTGCATTTTTAATTGCATGTCCTCTCTCGATTAAATG 1052 29 100.0 36 ............................. TTGCAATTGCTACAATTGCTAAAAATACCATATTAG 987 29 100.0 36 ............................. TTATGTCATAAGTTTCTACATCTTTTATAGCTTCAT 922 29 100.0 37 ............................. TATCATAAGCTAACTTAGTCATACTTTCAGACATATT 856 29 100.0 37 ............................. TCGCATAAGTCCAAGGGTTGTGTATCATCATCATTGC 790 29 100.0 36 ............................. ATCATCTTCTATAACTCCGTTATAAACCTTCTTAAT 725 29 100.0 36 ............................. TAGCTCGTGCTTCATTTGGTGTAATAAATCCACTTT 660 29 100.0 36 ............................. TTGCAATTACTGACGCTATACTTGCAGCTAATCCAT 595 29 100.0 37 ............................. AAGTTCTTAAACAGCAAACAAAAGAAAATATTTAAGA 529 29 100.0 37 ............................. TCTATCTATATTATTCCAGTTAAAAATAATTTTATTC 463 29 100.0 37 ............................. ATTTATGAATTTTATACAAGAAATAAGAATGTTTTAA 397 29 100.0 36 ............................. AGAAAAAATGCTAAAACATTCATCTGTGCATTAATC 332 29 100.0 37 ............................. AGCCCAGCATTAATAGTTTATCCAACATTGGAATTAG 266 29 100.0 36 ............................. GCTTATATTGTGATAATGGCAGCCCAACAACGATTT 201 29 93.1 0 ...........................GC | G [175] ========== ====== ====== ====== ============================= ======================================= ================== 22 29 99.7 37 GTTTTATATGGACAATGTGGGATGTAAAT # Left flank : GCACCTTCTAGGTGATGAAATTTATAAACCGTTAAAGGCATGGTGGTAACATGTTTGTTATAATAACTTACGATGTCGGTGAGAAAAGGGTTAATAAAGTGAGAAAGAAGCTCAAACAATATTTAATGTGGACGCAAAATTCCGTTTTTGAAGGCGATATTACAGAAGGGAAACTTCAAAAGTGTATGGCTGAGGTAAATAAAATAATTAAGAAGGAAGAGGATTCAGTTTATATTTATAGAATATACTTTCCAGCACAGATACAAAAGGATATAATGGGTGTTGTAAAAAGTTATGAAGATATTTTTATATAGTTGCAGCGAAGCGTATAAGTTTTTTGAATGCAATTTTGCTTTGGAAAATATGATTTTATAGCCCTTATTGCCTTGTTGTAGTTTAACATTACTATACCTTTGCTGCAAAATTGATTAAAATACAACGATTGCGATGCCTAATAAAGCTAGAATTTTTCTAGGTTATTTTAATTTGGATTTTTGGGG # Right flank : CGTCAAAACGCGACCACCTTTACAAAAAAAAGCCGCATTTTGATGCAACCTTTTACTTCAGTTTGGAAAAGTTTGGCATAGTTTCAAATAAATATTTCGAGACTGTAAAAATTTTTGTGTAAAGTGATTAAAAACCTCTTTCTTGGTAAGAATCAAAATATAAATCAAGAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGGACAATGTGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 58824-58558 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKHP01000009.1 Caloramator mitchellensis strain VF08 ABG79_contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 58823 32 100.0 45 ................................ CGGTGAAGTAAACATACATCATGCCCTCCTTGATTTGCAAGTGAT 58746 32 100.0 45 ................................ AAAATAACAAGGATTGGAGGTGAAACAACAGTGAACGAAAGTGAT 58669 32 100.0 48 ................................ ATACCCTGAATTTATGCAGTCAATTGTTGACTGCAAAGGAATCGTGAT 58589 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================ ================== 4 32 100.0 46 AATCCCTTCAATCAGGTCAATGTCATTTCTAC # Left flank : AACCATTGTATTATATATATGTTTATTAAATCTATTCGATTCTATGTATTTTTCCTCTTGTAATTTTGAATTAAATATCTGAGGTTCTTTTTTGAGCTTGTATTCATTTCTACAGAAATCTAAATAATCCTCTGTTCTATCAAATTTCATGTTTTGATGTTTTTTATCTATAAAAATCACTTTGCCAAAATCACGAAGCGGAAACTCTAATATACCCTTTGTTCCAGCATTTACCTTAATCAAATCATTATTTATATCTTCAACTTTTACTTTAGACAAATATTTATGGTATAAAATAGTCCCCACTTGGATAAATTCCTTCATTTCAATCCCCCCAAGCAAGGAAATAATTATAAATAAATTCTATCCAGTGGTCCTCTACCTTAGCAATAGTTAAAAACATTAACTACTCTTATCAACGAACTTTTTCAAGTAATATCATTTTAGCCTGTGCTAGTTAAATAAAGCACAGGCTTTTTCTCTTTCTTACAACAGATAAA # Right flank : GGCACCCCTTGCGAGGCATTGAAAATTCTGGGCTGAGAATGTGGTATTTGAAAACCTATTCAAAATCACTTTTTTTAGCTGCTAAATTTATTTTTATACATGCATTGTATACAAATAAAATTGTATCTCTTGCTTTGATTTGACTAGCTTATATGGTCCTACAAAACCCCCCCTACGTATAAAATGAAAATTGGGTTTTTTGATGTTGTTTTCTTTATTTATATATTCTACACGGATTATTGAATTCCTTCTTTAAAATAAGTTTATAGCCAAAAAATTTAGTTGCTTCAAAAAATTGGATTTCCATAATCACATTAACCTCAAGATATTAATACTCGTTGTCCCTTTGCCTAAATACCTTCCGATTTATCCTTTTTTACCTGATTGTATCTCAATTCAAATGAATATTGTTTTGGAATAGCATCTATCATATGTTTAGCTTTTTCCATTTTCATTTAAAACAACTTTAACCAAAACAACCTATAATTTTTTTATGAGCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTTCAATCAGGTCAATGTCATTTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //