Array 1 702377-701386 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRIX01000001.1 Providencia rettgeri strain GMW173_S1 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 702376 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 702316 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 702255 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 702195 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 702135 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 702075 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 702015 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 701955 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 701895 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 701835 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 701774 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 701714 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 701654 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 701594 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 701534 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 701474 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 701414 28 89.3 0 ...T......A.........T....... | G [701388] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 712786-711014 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRIX01000001.1 Providencia rettgeri strain GMW173_S1 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 712785 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 712725 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 712664 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 712603 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 712543 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 712482 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 712422 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 712362 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 712302 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 712242 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 712182 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 712122 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 712062 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 712001 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 711941 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 711881 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 711821 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 711761 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 711701 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 711641 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 711581 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 711521 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 711461 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 711401 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 711341 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 711281 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 711221 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 711161 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 711101 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 711041 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //