Array 1 115484-116642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAADY010000002.1 Streptococcus agalactiae strain iGBS343 NODE_2_length_160377_cov_74.2029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 115484 36 100.0 30 .................................... GAAGTCGAAAAAGATGACTTCTATTACTGG 115550 36 100.0 30 .................................... AATAACGTTCGGATTAAGCAAGTTATAAGG 115616 36 100.0 30 .................................... AATGAAGATATTCTAGCTCGTGTAAAAATA 115682 36 100.0 30 .................................... TGAAAAAATCAAAGAATTGTGCAAACAGCG 115748 36 100.0 30 .................................... ATCTAACTTAACTTATGAGTCAGTATTTTT 115814 36 100.0 30 .................................... TTGACCTGTTTCATTCTCTGGAACTTGTTG 115880 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 115946 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 116012 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 116078 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 116144 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 116210 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 116276 36 100.0 31 .................................... CACAAGAAACAAACAGCCTTGATGACTTAAT 116343 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 116409 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 116475 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 116541 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 116607 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAGG # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 9744-10572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAADY010000007.1 Streptococcus agalactiae strain iGBS343 NODE_7_length_113992_cov_85.8255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9744 32 100.0 34 ................................ ACGACTGCTTTTCTCCTTTACTATTTTTTTAAAG 9810 32 100.0 35 ................................ ATCTTTGTTTCAAAATCAACGTTATCCATGATAAA 9877 32 100.0 36 ................................ TTATCTGTTAAATAGATTGTCATACCCTTTTTAGCA 9945 32 100.0 33 ................................ TTCTAGGTCAATCAATTCTTGTGGTTTATCATG 10010 32 100.0 34 ................................ ACTCATTAAGCGTAATTCCGTGTTGTCAGGTGTA 10076 32 100.0 37 ................................ TTTAGTACCATATGGTTGCATGGCATTTACCAATACT 10145 32 100.0 35 ................................ TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC 10212 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 10278 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 10344 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 10411 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 10477 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 10542 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 98.3 35 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //