Array 1 181929-180113 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXZD01000002.1 Streptococcus mutans strain UAB-12 NODE_2_length_351394_cov_118.261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 181928 36 100.0 30 .................................... CAATTGCCTTTGCCAGCTCCGCTTGCGGTG 181862 36 100.0 30 .................................... GTATTGGCCACTCTCTACTCCTTTTATCAT 181796 36 100.0 30 .................................... CTTGCCATCTCGCAAAATGCACAAGATTTC 181730 36 100.0 30 .................................... TTGGTTAATTCGTCCATCTGAACAGTCAAA 181664 36 100.0 30 .................................... GTAATAACTTATCTTTAGAAGTCTTAAGCG 181598 36 100.0 30 .................................... TATAGCGCTGATTGATAGCGAAGCGACAAG 181532 36 100.0 30 .................................... GTCGCACGAACAATTATACTCGACTCTATC 181466 36 100.0 30 .................................... AAAGTGTAGTTGTTATCGTCTTGTTTCGAT 181400 36 100.0 30 .................................... TGTTTTTGAAGTCTTCTTTCGTAAGGAACC 181334 36 100.0 30 .................................... GTTTTGTTACCGCTACCCATGGCGATACTA 181268 36 100.0 30 .................................... TAGAAATGGCTTGACTTTTCGTTCATGCTT 181202 36 100.0 30 .................................... TACTCGATATCCCGCGACCTGATAATATAC 181136 36 100.0 30 .................................... ATAGCATTTTTGGCAAGACGATTAAAAACG 181070 36 100.0 30 .................................... ATTCCTGATATCATTTCAATTGATGATTGC 181004 36 100.0 30 .................................... ACCTAAACCTGGCACGGTCGCAGTTTACAC 180938 36 100.0 30 .................................... AAAACGCAAAACGGCAAGAACAAATTGCAT 180872 36 100.0 30 .................................... CTTCTGACTGTCTTTCAGAGTAATGAGTGC 180806 36 100.0 30 .................................... GCGAGCATTAGACAGATTAACTTCTGTAAT 180740 36 100.0 30 .................................... CCATTCTTGCTCTTGATTTGTTAAATCAAA 180674 36 100.0 29 .................................... GCCACGCAGAACAGCAGCAGAAAACCGCA 180609 36 100.0 30 .................................... ATAGTCCGCTTTAATTTGCATTAGAATTTC 180543 36 100.0 30 .................................... TTTGCCTGATGGGTCCATTGAGTCGACTGG 180477 36 100.0 30 .................................... CGGTTCTATGAGTTGTGAGTTCTTGATGCG 180411 36 100.0 30 .................................... ACCGAAAGCGTCAATGAATATATCGAAGTT 180345 36 100.0 30 .................................... TAACCTCCTCGCAAATATTATTTTCATTAT 180279 36 100.0 30 .................................... ACCAGATAGTATCAGAGATACCGAAATGGT 180213 36 100.0 29 .................................... GGCACATATAATCCGTAAAGGCGGCACAT 180148 35 75.0 0 ..........CA.......A.TG..T-.A.T..... | A [180133] ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.1 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAAGCGCTAGAAAGATTGATTTCTAGCGCTTTTTTAGGTATAATATAATTAATTAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : ACATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //