Array 1 165856-165051 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBOR01000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy2299_100 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 165855 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 165794 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 165733 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165672 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165611 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165549 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165446 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165385 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165324 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165263 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165202 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165141 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165080 29 96.6 0 A............................ | A [165053] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184152-181988 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBOR01000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy2299_100 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184151 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 184090 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184029 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 183968 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 183907 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 183846 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 183785 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 183724 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183663 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 183602 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 183541 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183480 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183419 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183358 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183297 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183236 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183175 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183114 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183053 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182992 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182931 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182870 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182809 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182748 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182687 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 182626 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 182565 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 182503 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182442 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182381 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182320 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182259 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182198 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182137 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182076 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182015 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //